View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18163_low_25 (Length: 256)
Name: NF18163_low_25
Description: NF18163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18163_low_25 |
 | |
|
| [»] scaffold0421 (1 HSPs) |
| | |
|
| [»] scaffold0008 (1 HSPs) |
| | |
|
| [»] scaffold0186 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0421 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 14000 - 14247
Alignment:
| Q |
1 |
ttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggtcacacttttg |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14000 |
ttccccaaaatttttagtttgattgtggttgttcctctaaatgttatcacatagagttggtgtcaaattcttaatcacaagaattgcggtcacatttttg |
14099 |
T |
|
| Q |
101 |
ttaaaaaatggtcaaattgagagaaatttgaagg-nnnnnnntgtggttacgtctatgttaaaatatggttaagtgcagataa--atgtttgtcagtatg |
197 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| |||||||| |
|
|
| T |
14100 |
ttaaaaaatggtcaaattgtgagaaatttgaaggaaaaaaaatgtggttacgtctatgttaaaatatggttaagtgcagataattttttttttcagtatg |
14199 |
T |
|
| Q |
198 |
tctataataacaaagataggaaaatattaacttgtcacagtataatct |
245 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||||||||||||| |||| |
|
|
| T |
14200 |
tctatggtaacaaagataagaaaacattaacttgtcacagtattatct |
14247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 115746 - 115507
Alignment:
| Q |
1 |
ttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggtcacacttttg |
100 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||| |||||||| |||||||||| || |
|
|
| T |
115746 |
ttccccaatttttgtagtttgattgtggttgttcctctaaatgatatcacgtagagttggtgtcaaatccttaatcaaaagaattgtggtcacacttgtg |
115647 |
T |
|
| Q |
101 |
ttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnntgtggttacgtctatgttaaaatatggttaagtgcagataaatgtttgtcagtatgtct |
200 |
Q |
| |
|
|||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
115646 |
ttaaaaaatggtcaaagtgttggaaatttgaaggaaaaaaatgtggttacgtctatgttaaaatatggttaagttcagataaatttttgtcagtatgtct |
115547 |
T |
|
| Q |
201 |
ataataacaaagataggaaaatattaacttgtcacagtat |
240 |
Q |
| |
|
|| |||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
115546 |
atgataacaaagatagggaaacattaacttgtcacagtat |
115507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 2 - 236
Target Start/End: Original strand, 13811454 - 13811688
Alignment:
| Q |
2 |
tccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggtcacacttttgt |
101 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||| | |||||||||| ||| |
|
|
| T |
13811454 |
tccccaatttttatagtttgattgtggttgttcctctaaatgatatcacgtagagttggtgtcaaattcttaatcaaaagaatcgtggtcacacttgtgt |
13811553 |
T |
|
| Q |
102 |
taaaaaatggtcaaattgagagaaatttgaaggnnnnnnntgtggttacgtctatgttaaaatatggttaagtgcagataaatgtttgtcagtatgtcta |
201 |
Q |
| |
|
|||||||||||||||||| |||||||| ||| || |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
13811554 |
taaaaaatggtcaaattgttggaaatttggaggaaaaaaatgcggttacgtctatgttaaaatgtggttaagtgcagataaatttttgtcagtatgtcta |
13811653 |
T |
|
| Q |
202 |
taataacaaagataggaaaatattaacttgtcaca |
236 |
Q |
| |
|
| |||||||||||||||||| |||||||||||||| |
|
|
| T |
13811654 |
tgataacaaagataggaaaacattaacttgtcaca |
13811688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 12213338 - 12213101
Alignment:
| Q |
1 |
ttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggtcacacttttg |
100 |
Q |
| |
|
|||||||| |||| |||||||||||| |||||||||||||||| |||||||| |||| ||||||||||||||||| |||||||| |||||||||| || |
|
|
| T |
12213338 |
ttccccaatttttgtagtttgattgtagttgttcctctaaatgatatcacgt---gttggtgtcaaattcttaatcaaaagaattgtggtcacacttgtg |
12213242 |
T |
|
| Q |
101 |
ttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnn-tgtggttacgtctatgttaaaatatggttaagtgcagataaatgtttgtcagtatgtc |
199 |
Q |
| |
|
|||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
12213241 |
ttaaaaaatggtcaaagtgttggaaatttgaaggaaaaaaaatgtggttacgtctatgttaaaatatggttaagtgaagataaatttttgtcagtatgtc |
12213142 |
T |
|
| Q |
200 |
tataataacaaagataggaaaatattaacttgtcacagtat |
240 |
Q |
| |
|
||| ||||||||||||||| || |||||||||||||||||| |
|
|
| T |
12213141 |
tatgataacaaagataggataacattaacttgtcacagtat |
12213101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 4270561 - 4270360
Alignment:
| Q |
1 |
ttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggtcacacttttg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| |||||||||| || |
|
|
| T |
4270561 |
ttccccaatttttttagtttgattgtggttgttcctctaaatgttatcacatagagttagtgtcaaattcttaatcaaaagaattgtggtcacacttgtg |
4270462 |
T |
|
| Q |
101 |
ttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnntgtggttacgtctatgttaaaatatggttaagtgcagataaatgtttgtcagtatgtct |
200 |
Q |
| |
|
|||||||||||||||| || |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
4270461 |
ttaaaaaatggtcaaagtgttggaaatttgaaagaaaaaaatgtggttacgtctatgttaaaatatggttaagtgcagataaatttttgtcggtatgtct |
4270362 |
T |
|
| Q |
201 |
at |
202 |
Q |
| |
|
|| |
|
|
| T |
4270361 |
at |
4270360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 31397601 - 31397366
Alignment:
| Q |
1 |
ttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggtcacacttttg |
100 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||| |||||||| |||||||||| || |
|
|
| T |
31397601 |
ttccccaatttttgtagtttgattgtggttgttcctctaaatgatatcacttagagttggtgtcaaattcttaatcaaaagaattgtggtcacacttgtg |
31397502 |
T |
|
| Q |
101 |
ttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnntgtggttacgtctatgttaaaatatggttaagtgcagataaatgtttgtcagtatgtct |
200 |
Q |
| |
|
|||||||||||||||| || |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||| | |
|
|
| T |
31397501 |
ttaaaaaatggtcaaagtgttggaaatttgaaggaaaaaaatgtggttacgtatatgttaaaatatggttaagtgcagataaatttttgtaagtatgtat |
31397402 |
T |
|
| Q |
201 |
ataataacaaagataggaaaatattaacttgtcaca |
236 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||| |
|
|
| T |
31397401 |
atgataacaaagataggaaaacattaacttgtcaca |
31397366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 2499878 - 2500113
Alignment:
| Q |
1 |
ttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggtcacacttttg |
100 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||| |||||||| |||||||||| || |
|
|
| T |
2499878 |
ttccccaatttttgtagtttgattgtggttgttactctaaatgatatcacgtagagttggtgtcaaattcttaatcaaaagaattgtggtcacacttgtg |
2499977 |
T |
|
| Q |
101 |
ttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnntgtggttacgtctatgttaaaatatggttaagtgcagataaatgtttgtcagtatgtct |
200 |
Q |
| |
|
|||||||||||||||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||| | |
|
|
| T |
2499978 |
ttaaaaaatggtcaaagtgttgaaaatttgaaggaaaaaaatgtggttacgtctacgttaaaatatggttaagtgcagataaatttttgtcagtgtgtat |
2500077 |
T |
|
| Q |
201 |
ataataacaaagataggaaaatattaacttgtcaca |
236 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||| |
|
|
| T |
2500078 |
atgataacaaagataggaaaacattaacttgtcaca |
2500113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 2503645 - 2503410
Alignment:
| Q |
1 |
ttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggtcacacttttg |
100 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||| |||||||| |||||||| |||||||||| || |
|
|
| T |
2503645 |
ttccccaatttttgtagtttgattgtggttgttactctaaatgatatcacgtagagttggtgtcaaatacttaatcaaaagaattgtggtcacacttgtg |
2503546 |
T |
|
| Q |
101 |
ttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnntgtggttacgtctatgttaaaatatggttaagtgcagataaatgtttgtcagtatgtct |
200 |
Q |
| |
|
|||||||||||||||| || ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| | |
|
|
| T |
2503545 |
ttaaaaaatggtcaaagtgttggaaatttaaaggtaaaaaatgtggttacgtctatgttaaaatatggttaagtgcagataaatttttgtcagtgtgtat |
2503446 |
T |
|
| Q |
201 |
ataataacaaagataggaaaatattaacttgtcaca |
236 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||| |
|
|
| T |
2503445 |
atgataacaaagataggaaaacattaacttgtcaca |
2503410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 22242252 - 22242017
Alignment:
| Q |
1 |
ttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggtcacacttttg |
100 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||| |||||||| |||||||||| || |
|
|
| T |
22242252 |
ttccccaatttttgtagtttgattgtggttgttcctctaaatgatatcacttagagttggtgtcaaattcttaatcaaaagaattgtggtcacacttgtg |
22242153 |
T |
|
| Q |
101 |
ttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnntgtggttacgtctatgttaaaatatggttaagtgcagataaatgtttgtcagtatgtct |
200 |
Q |
| |
|
|||||||||||||||| || |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||| | |
|
|
| T |
22242152 |
ttaaaaaatggtcaaagtgttggaaatttgaaggaaaaaaatgtggttacgtatatgttaaaatatggttaagtgcagataaatttttgtaagtatgtat |
22242053 |
T |
|
| Q |
201 |
ataataacaaagataggaaaatattaacttgtcaca |
236 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||| |
|
|
| T |
22242052 |
atgataacaaagataggaaaacattaacttgtcaca |
22242017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 6609929 - 6609728
Alignment:
| Q |
1 |
ttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggtcacacttttg |
100 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| ||||| |||| || |
|
|
| T |
6609929 |
ttccccaatttttttagtttgattgcggttgttcctctaaatgttatcacatagagttagtgtcaaattcttaatcaaaagaattgtggtcaaacttgtg |
6609830 |
T |
|
| Q |
101 |
ttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnntgtggttacgtctatgttaaaatatggttaagtgcagataaatgtttgtcagtatgtct |
200 |
Q |
| |
|
|||||||||||||||| || |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6609829 |
ttaaaaaatggtcaaagtgttggaaatttgaaggaaaaaaatgtggctacgtctatgttaaaatatggttaagtgcagataaatttttgtcagtatgtct |
6609730 |
T |
|
| Q |
201 |
at |
202 |
Q |
| |
|
|| |
|
|
| T |
6609729 |
at |
6609728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 6624199 - 6624400
Alignment:
| Q |
1 |
ttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggtcacacttttg |
100 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| ||||| |||| || |
|
|
| T |
6624199 |
ttccccaatttttttagtttgattgcggttgttcctctaaatgttatcacatagagttagtgtcaaattcttaatcaaaagaattgtggtcaaacttgtg |
6624298 |
T |
|
| Q |
101 |
ttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnntgtggttacgtctatgttaaaatatggttaagtgcagataaatgtttgtcagtatgtct |
200 |
Q |
| |
|
|||||||||||||||| || |||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6624299 |
ttaaaaaatggtcaaagtgttggaaatttgaaggaaaaaaatgtggctacgtctatattaaaatatggttaagtgcagataaatttttgtcagtatgtct |
6624398 |
T |
|
| Q |
201 |
at |
202 |
Q |
| |
|
|| |
|
|
| T |
6624399 |
at |
6624400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 41551816 - 41551614
Alignment:
| Q |
1 |
ttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggtcacacttttg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| |||||||||| || |
|
|
| T |
41551816 |
ttccccaatttttttagtttgattgtggttgttcctctaaatgttatcacatagagttagtgtcaaattcttaatcaaaagaattgtggtcacacttgtg |
41551717 |
T |
|
| Q |
101 |
ttaaaaaatggtcaaattgagagaaatttg-aaggnnnnnnntgtggttacgtctatgttaaaatatggttaagtgcagataaatgtttgtcagtatgtc |
199 |
Q |
| |
|
|||||||||||||||| || |||||||| ||| |||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||| |
|
|
| T |
41551716 |
ttaaaaaatggtcaaagtgttggaaatttgaaagaaaaaaaatgtggttacgtctatgttaaaatacggttaagtgcagataaatttttgtcggtatgtc |
41551617 |
T |
|
| Q |
200 |
tat |
202 |
Q |
| |
|
||| |
|
|
| T |
41551616 |
tat |
41551614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 30203 - 29962
Alignment:
| Q |
1 |
ttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggtcacacttttg |
100 |
Q |
| |
|
||||| || |||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||| |||||||||| || |
|
|
| T |
30203 |
ttccctaatttttgtagtttgattgtggttgttcctctaaatgatatcacgtagagttggtgtcaaattcttaatcaaaagaattgtggtcacacttatg |
30104 |
T |
|
| Q |
101 |
ttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnntgtggttacgtctatgttaaaatat--ggttaagtgcagataaatgtttgtcagtatgt |
198 |
Q |
| |
|
|||||||||||||||| || |||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| | ||||||||||||| |
|
|
| T |
30103 |
ttaaaaaatggtcaaagtgttggaaatttgaaggaaaaaaatgtggttacgtctatgttaaaatatggggttatgtgcagataattttttgtcagtatgt |
30004 |
T |
|
| Q |
199 |
ctataataacaaagataggaaaatattaacttgtcacagtat |
240 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30003 |
ctatggtaacaaagataggaaaacattaacttgtcacagtat |
29962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 19145958 - 19146159
Alignment:
| Q |
1 |
ttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggtcacacttttg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| |||||||||| || |
|
|
| T |
19145958 |
ttccccaatttttttagtttgattgtggttgttcctctaaatgttatcacatagagttagtgtcaaattcttaatcaaaagaattgtggtcacacttgtg |
19146057 |
T |
|
| Q |
101 |
ttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnntgtggttacgtctatgttaaaatatggttaagtgcagataaatgtttgtcagtatgtct |
200 |
Q |
| |
|
|||||||||||||||| || |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
19146058 |
ttaaaaaatggtcaaagtgttggaaatttgaaagaaaaaaatgtggttacgtctatgttaaaatatggttaagtgcagataaatttttgtcggtatgtct |
19146157 |
T |
|
| Q |
201 |
at |
202 |
Q |
| |
|
|| |
|
|
| T |
19146158 |
at |
19146159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 23673294 - 23673495
Alignment:
| Q |
1 |
ttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggtcacacttttg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| |||||||||| || |
|
|
| T |
23673294 |
ttccccaatttttttagtttgattgtggttgttcctctaaatgttatcacatagagttagtgtcaaattcttaatcaaaagaattgtggtcacacttgtg |
23673393 |
T |
|
| Q |
101 |
ttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnntgtggttacgtctatgttaaaatatggttaagtgcagataaatgtttgtcagtatgtct |
200 |
Q |
| |
|
|||||||||||||||| || |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
23673394 |
ttaaaaaatggtcaaagtgttggaaatttgaaagaaaaaaatgtggttacgtctatgttaaaatatggttaagtgcagataaatttttgtcggtatgtct |
23673493 |
T |
|
| Q |
201 |
at |
202 |
Q |
| |
|
|| |
|
|
| T |
23673494 |
at |
23673495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 55045115 - 55044913
Alignment:
| Q |
1 |
ttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaatcacaagaattgcggtcacacttttg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||| |||||||| |||||||||| || |
|
|
| T |
55045115 |
ttccccaatttttttagtttgattgtggttgttcctctaaatgttatcacatagagttagtgtcaaatttttaatcaaaagaattgtggtcacacttgtg |
55045016 |
T |
|
| Q |
101 |
ttaaaaaatggtcaaattgagagaaatttg-aaggnnnnnnntgtggttacgtctatgttaaaatatggttaagtgcagataaatgtttgtcagtatgtc |
199 |
Q |
| |
|
|||||||||||||||| || |||||||| ||| |||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||| |
|
|
| T |
55045015 |
ttaaaaaatggtcaaagtgttggaaatttgaaagaaaaaaaatgtggttacgtctatgttaaaatacggttaagtgcagataaatttttgtcggtatgtc |
55044916 |
T |
|
| Q |
200 |
tat |
202 |
Q |
| |
|
||| |
|
|
| T |
55044915 |
tat |
55044913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 22043803 - 22043974
Alignment:
| Q |
68 |
ttcttaatcacaagaattgcggtcacacttttgttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnntgtggttacgtctatgttaaaatatg |
167 |
Q |
| |
|
|||||||||| |||||||| |||||||||| |||||||||||||||||| || |||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
22043803 |
ttcttaatcaaaagaattgtggtcacacttgtgttaaaaaatggtcaaagtgttggaaatttgaaggaaaaaaatgtggtcacgtctatgttaaaatatc |
22043902 |
T |
|
| Q |
168 |
gttaagtgcagataaatgtttgtcagtatgtctataataacaaagataggaaaatattaacttgtcacagtat |
240 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22043903 |
gttaagtgcagataaat-tttgtcagtatgtctatgataacaaagataggaaaacattaacttgtcacagtat |
22043974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 19849368 - 19849134
Alignment:
| Q |
1 |
ttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagag--ttgatgtcaaattcttaatcacaagaattgcggtcacacttt |
98 |
Q |
| |
|
||||||||||| |||||| || | |||||||||||||||||| |||||||||||| || ||||||| ||||||||| |||||||| ||||||||||| |
|
|
| T |
19849368 |
ttccccaaattatttagtctgtctttggttgttcctctaaatgatatcacgtagagagttagtgtcaaactcttaatcaaaagaattgtggtcacacttt |
19849269 |
T |
|
| Q |
99 |
tgttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnntgtggttacgtctatgttaaaatatggttaagtgcagataaatgtttgtcagtatgt |
198 |
Q |
| |
|
||||||||||||||| || || | ||||||||| | ||||||||||||| ||||||||||||| |||||||| |||| | ||||| |||||| |
|
|
| T |
19849268 |
tgttaaaaaatggtc-aagtgctaaaaatttgaa-gaaaaaaatgtggttacgtctttgttaaaatatggctaagtgcatataattttttgttagtatgc |
19849171 |
T |
|
| Q |
199 |
ctataataacaaagataggaaaatattaacttgtcac |
235 |
Q |
| |
|
|||| |||||||| ||||||||| ||||||||||||| |
|
|
| T |
19849170 |
ctatcataacaaacataggaaaacattaacttgtcac |
19849134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 22043449 - 22043522
Alignment:
| Q |
1 |
ttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaa |
74 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||| |
|
|
| T |
22043449 |
ttccccaaattttgtagtttgattgtggttgttcctctaaatgatatcacgtagagttggtgtcaatttcttaa |
22043522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 44354190 - 44354361
Alignment:
| Q |
68 |
ttcttaatcacaagaattgcggtcacacttttgttaaaaaatggtcaaattgagagaaatttgaaggnnnnnnntgtggttacgtctatgttaaaatatg |
167 |
Q |
| |
|
|||||||||| |||||||| |||||||||| |||||||||||||||||| || |||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
44354190 |
ttcttaatcaaaagaattgtggtcacacttgtgttaaaaaatggtcaaagtgttggaaatttgaaggaaaaaaatgtggtcacgtctatgttaaaatatc |
44354289 |
T |
|
| Q |
168 |
gttaagtgcagataaatgtttgtcagtatgtctataataacaaagataggaaaatattaacttgtcacagtat |
240 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44354290 |
gttaagtgcagataaat-tttgtcagtatgtctatgataacaaagataggaaaacattaacttgtcacagtat |
44354361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 44353828 - 44353901
Alignment:
| Q |
1 |
ttccccaaattttttagtttgattgtggttgttcctctaaatgttatcacgtagagttgatgtcaaattcttaa |
74 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||| |
|
|
| T |
44353828 |
ttccccaaattttgtagtttgattgtggttgttcctctaaatgatatcacgtagagttggtgtcaatttcttaa |
44353901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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