View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18163_low_27 (Length: 241)
Name: NF18163_low_27
Description: NF18163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18163_low_27 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 241
Target Start/End: Complemental strand, 3110816 - 3110590
Alignment:
| Q |
15 |
aaaaccaacatggtttttcacacaatattcaaacctatgcttccatcattagaatactatgttactataatttagatagaaagttggattctcttttccg |
114 |
Q |
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| T |
3110816 |
aaaaccaacatggtttttcacacaatattcaaacctatgcttccatcattagaatactatgttactataatttagatagaaagttggattctcttttccg |
3110717 |
T |
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| Q |
115 |
taatataataatttctcattctaaacaaaacccatcatttgaaatacatgacttgtttgagaagctattagagggtgttgatgttgttgagaataaaaaa |
214 |
Q |
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| T |
3110716 |
tgatataatgatttttcattctaaacaaaacccatcatttgaaatacatgacttgtttgagaagctattagagggtgttgatgttgttgagaataaaaaa |
3110617 |
T |
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| Q |
215 |
cattacttggctatactcagagcattt |
241 |
Q |
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| T |
3110616 |
cattacttggctatactcagagcattt |
3110590 |
T |
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Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 3103820 - 3103729
Alignment:
| Q |
15 |
aaaaccaacatggtttttcacacaatattcaaacctatgcttccatcattagaatactatgttactataatttagatagaaagttggattct |
106 |
Q |
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| T |
3103820 |
aaaaccaacatgggttttctcacaatattcaaacctatacttccatcattagaatactatgttactataatttagatagaaagttggattct |
3103729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 41626056 - 41626240
Alignment:
| Q |
15 |
aaaaccaacatggtttttcacacaatattcaaacctatgcttccatcattagaatactatgttactataatttagatagaaagttggattctcttttccg |
114 |
Q |
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|||||||||||||||| || ||||||||||||||||||| | |||||||||||||||| ||||||| || || |||||| |||||||||||||||||| |
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| T |
41626056 |
aaaaccaacatggtttctctcacaatattcaaacctatgttgccatcattagaatactctgttactggaacttgaatagaaggttggattctcttttccg |
41626155 |
T |
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| Q |
115 |
taatataataatttctcattctaaacaaaacccatcatttgaaatacatgacttgtttgagaagctattagagggtgttgatgtt |
199 |
Q |
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| T |
41626156 |
tgatataataatttctcattctaaacaaaacccattatttgaaattcatgacttgtttgagaaactattggagggtgttaatgtt |
41626240 |
T |
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