View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18163_low_29 (Length: 236)

Name: NF18163_low_29
Description: NF18163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18163_low_29
NF18163_low_29
[»] scaffold0421 (1 HSPs)
scaffold0421 (1-221)||(13779-14001)
[»] chr6 (2 HSPs)
chr6 (5-67)||(19849371-19849434)
chr6 (1-39)||(22043412-22043450)
[»] chr4 (5 HSPs)
chr4 (155-221)||(30219767-30219833)
chr4 (170-221)||(30229257-30229308)
chr4 (167-221)||(30033043-30033097)
chr4 (167-219)||(30049143-30049195)
chr4 (167-219)||(30063484-30063536)
[»] scaffold0008 (1 HSPs)
scaffold0008 (1-39)||(115745-115783)
[»] chr8 (4 HSPs)
chr8 (1-39)||(2499841-2499879)
chr8 (1-39)||(2503644-2503682)
chr8 (1-39)||(31397600-31397638)
chr8 (1-68)||(39036466-39036535)
[»] chr7 (1 HSPs)
chr7 (1-39)||(22242251-22242289)
[»] chr3 (2 HSPs)
chr3 (1-39)||(12213337-12213375)
chr3 (3-39)||(13811416-13811452)
[»] chr2 (1 HSPs)
chr2 (1-39)||(44353791-44353829)


Alignment Details
Target: scaffold0421 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 14001 - 13779
Alignment:
Q  1 aaaacttatgattttttactaacaataatacaatgataaatgaatgttttctatgtataacatgttttttatgtatcacaaaaacaaatgaaattctcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  14001 aaaacttatgattttttactaacaataatacaatgataaatgaatgttttctatgtataacatgttatttatgtatcacaaaaacaaatgcaattctcat 13902  T
Q  101 aaagtgcaaccattaacataataaaagcatccaaatgggt--aaggtgcaaaaacttcataaattggtatagctaattccagaaagccaaaaacaaatgc 198  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13901 aaagtgcaaccattaacataataaaagcatccaaatgggtaaaaggtgcaaaaacttcataaattggtatagctaattccagaaagccaaaaacaaatgc 13802  T
Q  199 acatattacagagctgttgaaat 221  Q
    |||||||||||||||||||||||    
T  13801 acatattacagagctgttgaaat 13779  T

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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 19849371 - 19849434
Alignment:
Q  5 cttatgattttttactaacaataatacaatgataaatgaatgtt-ttctatgtataacatgttt 67  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19849371 cttatgattgtttactaacaataatacaatgataaatgaatgttcttctatgtataacatgttt 19849434  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 22043450 - 22043412
Alignment:
Q  1 aaaacttatgattttttactaacaataatacaatgataa 39  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  22043450 aaaacttatgattttgtactaacaacaatacaatgataa 22043412  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 30219833 - 30219767
Alignment:
Q  155 tcataaattggtatagctaattccagaaagccaaaaacaaatgcacatattacagagctgttgaaat 221  Q
    |||| |||||| ||||||||||||||||| ||||||||| ||| |||||| |||||||| |||||||    
T  30219833 tcatcaattggaatagctaattccagaaacccaaaaacatatgaacatatcacagagctattgaaat 30219767  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 30229257 - 30229308
Alignment:
Q  170 gctaattccagaaagccaaaaacaaatgcacatattacagagctgttgaaat 221  Q
    |||||||||||||||||||||||| ||| ||| || ||||||||||||||||    
T  30229257 gctaattccagaaagccaaaaacatatgaacacatcacagagctgttgaaat 30229308  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 30033043 - 30033097
Alignment:
Q  167 atagctaattccagaaagccaaaaacaaatgcacatattacagagctgttgaaat 221  Q
    ||||| || |||||||||||||||||| ||| |||||| ||||||||||||||||    
T  30033043 atagcaaactccagaaagccaaaaacatatgaacatatgacagagctgttgaaat 30033097  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 30049143 - 30049195
Alignment:
Q  167 atagctaattccagaaagccaaaaacaaatgcacatattacagagctgttgaa 219  Q
    ||||||||||||| |||| |||||||| ||| |||||| ||||||||||||||    
T  30049143 atagctaattccaaaaaggcaaaaacatatgaacatatcacagagctgttgaa 30049195  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 30063484 - 30063536
Alignment:
Q  167 atagctaattccagaaagccaaaaacaaatgcacatattacagagctgttgaa 219  Q
    ||||||||||||| |||| |||||||| ||| |||||| ||||||||||||||    
T  30063484 atagctaattccaaaaaggcaaaaacatatgaacatatcacagagctgttgaa 30063536  T

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Target: scaffold0008 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 115745 - 115783
Alignment:
Q  1 aaaacttatgattttttactaacaataatacaatgataa 39  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  115745 aaaacttatgattttgtactaacaacaatacaatgataa 115783  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 2499879 - 2499841
Alignment:
Q  1 aaaacttatgattttttactaacaataatacaatgataa 39  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  2499879 aaaacttatgattttgtactaacaacaatacaatgataa 2499841  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 2503644 - 2503682
Alignment:
Q  1 aaaacttatgattttttactaacaataatacaatgataa 39  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  2503644 aaaacttatgattttgtactaacaacaatacaatgataa 2503682  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 31397600 - 31397638
Alignment:
Q  1 aaaacttatgattttttactaacaataatacaatgataa 39  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  31397600 aaaacttatgattttgtactaacaacaatacaatgataa 31397638  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 39036466 - 39036535
Alignment:
Q  1 aaaacttatgattttttactaacaat-aatacaatgataaatgaatgtt-ttctatgtataacatgtttt 68  Q
    ||||||| ||| |||||||||||||  |||||||||| || |||||| | ||||||||||||||||||||    
T  39036466 aaaacttgtgagtttttactaacaaacaatacaatgagaagtgaatgatcttctatgtataacatgtttt 39036535  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 22242251 - 22242289
Alignment:
Q  1 aaaacttatgattttttactaacaataatacaatgataa 39  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  22242251 aaaacttatgattttgtactaacaacaatacaatgataa 22242289  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 12213337 - 12213375
Alignment:
Q  1 aaaacttatgattttttactaacaataatacaatgataa 39  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  12213337 aaaacttatgattttgtactaacaacaatacaatgataa 12213375  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 13811452 - 13811416
Alignment:
Q  3 aacttatgattttttactaacaataatacaatgataa 39  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  13811452 aacttatgattttgtactaacaacaatacaatgataa 13811416  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 44353829 - 44353791
Alignment:
Q  1 aaaacttatgattttttactaacaataatacaatgataa 39  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  44353829 aaaacttatgattttgtactaacaacaatacaatgataa 44353791  T

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