View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18163_low_3 (Length: 472)
Name: NF18163_low_3
Description: NF18163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18163_low_3 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 18 - 472
Target Start/End: Complemental strand, 10728355 - 10727901
Alignment:
| Q |
18 |
gctaggaggaatgaccttccgattactgcctctagactttgcgcgttgtgtgatacggtggaggaaacagatggacatttattcatgcattgcattgtgg |
117 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||| || |||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10728355 |
gctaggaggaatgtccttccgattaatgcctctcgaatttgtgtgttgtgtgatacggaggaggaaacagatggacatttattcatgcattgcattgtgg |
10728256 |
T |
|
| Q |
118 |
cgcgtaatgtgtggttagggttactattatggttacaaggggagatgataatgctgccaaatttgtttaaccattgggaatgttggaaacttggaatagt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10728255 |
tgcgtaatgtgtggttagggttactattatggttacaaggggagatgataatgctgccaaatttgtttaaccattgggaatgttggaaacatggaatagt |
10728156 |
T |
|
| Q |
218 |
atgtcgaagaacaaaaaggaaacaaaggggatgagtctcatttggcattcaacgatttgggttttatggaaagctagaaacaatttcattttcaacaatg |
317 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10728155 |
atgtcgaggaacaaaaaggaaacaaaggggatgagtctcatttagcattcaacgatttgggtcttatggaaagctagaaacaatttcattttcaacaatg |
10728056 |
T |
|
| Q |
318 |
gagtgatttcgatgccggagctagtggatgaagtaaaagtgttgtcgtggaggtgggggttaactcggctaacaattccgacatgtttgttttatgaatg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10728055 |
gagtgatttcgatgccggagctagtggatgaagtaaaagtgttgtcgtggaggtgggggttaactcggctaacaattccgacatgtttgttttatgaatg |
10727956 |
T |
|
| Q |
418 |
atgttggaacccaagagattgcctttgtagttcctgagtggggctggtataatgt |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10727955 |
atgttggaacccaagagattgcctttgtagttcttgagtggggctggtataatgt |
10727901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 22 - 314
Target Start/End: Complemental strand, 8324677 - 8324402
Alignment:
| Q |
22 |
ggaggaatgaccttccgattactgcctctagactttgcgcgttgtgtgatacggtggaggaaacagatggacatttattcatgcattgcattgtggcgcg |
121 |
Q |
| |
|
||||||||| ||||||||||| ||||||| || ||| | |||||||||| | | | |||||| ||| ||||| |||||||||||||| |
|
|
| T |
8324677 |
ggaggaatgtccttccgattaatgcctcttgaaattgtgtgttgtgtgatgcagagaaggaaatggatagacatctattcatgcattgc----------- |
8324589 |
T |
|
| Q |
122 |
taatgtgtggttagggttactattatggttacaaggggagatgataatgctgccaaatttgtttaaccattgggaatgttggaaacttggaatagtatgt |
221 |
Q |
| |
|
||||||||||| || | |||| ||||||||||||||||||||||||| |||||||||||| |||| ||| | | | |||||||||||||| |
|
|
| T |
8324588 |
-aatgtgtggttgagggtgctatattggttacaaggggagatgataatgc-gccaaatttgttcaacctttgtaagt----aagtgttggaatagtatgt |
8324495 |
T |
|
| Q |
222 |
cgaagaacaaaaaggaaacaaaggggatgagtctcatttggcattcaacgatttgggttttatggaaagctagaaacaatttcattttcaaca |
314 |
Q |
| |
|
||| || ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
8324494 |
cgaggagtaaaaaggaaacaaaggggatgagactcatttgacattcaacgatttgggtcatatggaaagttagaaacaattgcattttcaaca |
8324402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 438
Target Start/End: Original strand, 41029688 - 41029725
Alignment:
| Q |
401 |
tgtttgttttatgaatgatgttggaacccaagagattg |
438 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
41029688 |
tgtttgttttatgaatggtgttggaacccaaaagattg |
41029725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 443
Target Start/End: Original strand, 29083182 - 29083230
Alignment:
| Q |
395 |
ccgacatgtttgttttatgaatgatgttggaacccaagagattgccttt |
443 |
Q |
| |
|
||||| || |||||||||||||| ||||||||||||| ||| ||||||| |
|
|
| T |
29083182 |
ccgacttgcttgttttatgaatggtgttggaacccaaaagaatgccttt |
29083230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 297
Target Start/End: Original strand, 37035537 - 37035565
Alignment:
| Q |
269 |
acgatttgggttttatggaaagctagaaa |
297 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
37035537 |
acgatttgggttttatggaaagctagaaa |
37035565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 29287095 - 29287141
Alignment:
| Q |
395 |
ccgacatgtttgttttatgaatgatgttggaacccaagagattgcct |
441 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||| || ||||| |
|
|
| T |
29287095 |
ccgacatgtttgttttatgaatgaagttggaatccaagggactgcct |
29287141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 47820179 - 47820216
Alignment:
| Q |
257 |
atttggcattcaacgatttgggttttatggaaagctag |
294 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
47820179 |
atttggcatgcgacgatttgggttttatggaaagctag |
47820216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University