View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18163_low_5 (Length: 460)
Name: NF18163_low_5
Description: NF18163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18163_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 41 - 403
Target Start/End: Complemental strand, 45974670 - 45974303
Alignment:
| Q |
41 |
aagttaggaaggaat-gaattattattttctgattaaaattaacaaaaaattattagctaacattatatgttaaactttaagtcagtagatttttacatt |
139 |
Q |
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||||||||||||||| ||| | |||||||||||||||||||| ||| ||||||||| |||| |||||||||| ||||||||||||||| ||||||||||| |
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| T |
45974670 |
aagttaggaaggaatagaaattttattttctgattaaaattatcaacaaattattacctaatattatatgttgaactttaagtcagtatatttttacatt |
45974571 |
T |
|
| Q |
140 |
tatgattgtgttcctgtagagattatgacaaccccctcagaacttcgaatgaagatgggaaaggttgataccaacatga-----ttgaagagacaggaaa |
234 |
Q |
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| T |
45974570 |
tatgattgtgttcttgtagagactgtgacaacctatt-agaacttcgaatgaagatgggaaaggttgataccaacatgacatgattgaagagacaggaaa |
45974472 |
T |
|
| Q |
235 |
aatgaaagcaaaaaggaatgacaacaataaaatggacatttctgctatatatgcttccaaaggtaaccaaaatatcattcattgttctgaaacatgaatt |
334 |
Q |
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| T |
45974471 |
aatgaaagcaaaaaggaatgacaacaataaaatggacatttctgctatatatgctgccaaaggtaaccaaaatatcattcattgttctgaaacatgaatt |
45974372 |
T |
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| Q |
335 |
aattttcacaggttgaacttcttagttctgagttgaacatttctggttgcaggcatctctaatacaaaa |
403 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
45974371 |
aattttcacaggttgaacttcttagttctgtgttgaacatttctggttgcaggcctctctaatacaaaa |
45974303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 65 - 399
Target Start/End: Original strand, 45857200 - 45857534
Alignment:
| Q |
65 |
ttttctgattaaaattaacaaaaaattattagctaacattatatgttaaactttaagtcagtagatttttacatttatgattgtgttcctgtagagatta |
164 |
Q |
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| T |
45857200 |
ttttctgattgaaattattaacaaattattagctaatattatatgttgaactttaagtcagtagatttttacatttatgattgtgttcctgtagagatca |
45857299 |
T |
|
| Q |
165 |
tgacaaccccctcagaacttcgaatgaagatgggaaaggttgataccaacatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataa |
264 |
Q |
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||| ||| ||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
45857300 |
tgataactgcctcagaacttcgaatgaagatgggaaagcttaacaccaacatgattgaagagacaggaaaagtgaaagcaaaaaggattgacaacaataa |
45857399 |
T |
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| Q |
265 |
aatggacatttctgctatatatgcttccaaaggtaaccaaaatatcattcattgttctgaaacatgaattaattttcacaggttgaacttcttagttctg |
364 |
Q |
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| T |
45857400 |
aatggacatttctgctatatatgctgccaaaggtaaccaaaatatcattcattgttctgcaacatgaattaattttcacaggctgaactctatagttctg |
45857499 |
T |
|
| Q |
365 |
agttgaacatttctggttgcaggcatctctaatac |
399 |
Q |
| |
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| T |
45857500 |
atttgaacatttctggatgcaggcctatctaatac |
45857534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 46 - 399
Target Start/End: Original strand, 45869735 - 45870087
Alignment:
| Q |
46 |
aggaaggaatgaattattattttctgattaaaattaacaaaaaattattagctaacattatatgttaaactttaagtcagtagatttttacatttatgat |
145 |
Q |
| |
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||||| ||||||||| | |||||||||| |||||| || |||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
45869735 |
aggaaagaatgaatttgttttttctgattgaaattattaacaaattattagctaatattatatgttgaactttaagtcagtagatttttacaattatgat |
45869834 |
T |
|
| Q |
146 |
tgtgttcctgtagagattatgacaaccccctcagaacttcgaatgaagatgggaaaggttgataccaacatgattgaagagacaggaaaaatgaaagcaa |
245 |
Q |
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||||||||| ||||||| ||||| ||| ||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||| |
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| T |
45869835 |
tgtgttcct-tagagatcatgactaccgcctcagaacttcgaatgaagatgggaaagcttaacaccaacatgattgaagagacaggaaaagtgaaagcaa |
45869933 |
T |
|
| Q |
246 |
aaaggaatgacaacaataaaatggacatttctgctatatatgcttccaaaggtaaccaaaatatcattcattgttctgaaacatgaattaattttcacag |
345 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
45869934 |
aaaggattgacaacaataaaatggacatttctgctatatatgcttccaaaggtaaccaaaatatcattcattcttctgcaacatgaattaattttcacag |
45870033 |
T |
|
| Q |
346 |
gttgaacttcttagttctgagttgaacatttctggttgcaggcatctctaatac |
399 |
Q |
| |
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| T |
45870034 |
gctgaactccatagttctgatttgaacttttctggatgcaggcctatctaatac |
45870087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 213 - 445
Target Start/End: Complemental strand, 45965089 - 45964857
Alignment:
| Q |
213 |
acatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataaaatggacatttctgctatatatgcttccaaaggtaaccaaaatatcat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45965089 |
acatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataaaatggacatttctgctatatatgcttccaaaggtaaccaaaatatcat |
45964990 |
T |
|
| Q |
313 |
tcattgttctgaaacatgaattaattttcacaggttgaacttcttagttctgagttgaacatttctggttgcaggcatctctaatacaaaagatagaaat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45964989 |
tcattgttctgaaacatgaattaattttcacaggttgaacttcttagttctgtgttgaacatttctggttgcaggccactctaatacaaaagatagaaat |
45964890 |
T |
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| Q |
413 |
gagtnnnnnnnnnctctacgaagtaaaagaggt |
445 |
Q |
| |
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|||| |||||||||||||||||||| |
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| T |
45964889 |
gagtaaaaaaaaactctacgaagtaaaagaggt |
45964857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 45 - 403
Target Start/End: Complemental strand, 45981103 - 45980755
Alignment:
| Q |
45 |
taggaaggaatgaattattattttctgattaaaattaacaaaaaattattagctaacattatatgttaaactttaagtcagtagatttttacatttatga |
144 |
Q |
| |
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|||||| ||||||||| | |||||||||| |||||| || ||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45981103 |
taggaaagaatgaatttgttttttctgattgaaattattaacaaactattagctaatattatatgttgaactttaagtcagtagatttttacatttatgg |
45981004 |
T |
|
| Q |
145 |
ttgtgttcctgtagagattatgacaaccccctcagaacttcgaatgaagatgggaaaggttgataccaacatgattgaagagacaggaaaaatgaaagca |
244 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||| | | ||||| |||||| | ||||||| |||||||| ||| ||||||||||||||| |
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| T |
45981003 |
ttgtgttcctgcagagattatgacaaccgcctcagaacttcaactcaagataggaaagctaaccaccaacaagattgaagggaccggaaaaatgaaagca |
45980904 |
T |
|
| Q |
245 |
aaaaggaatgacaacaataaaatggacatttctgctatatatgcttccaaaggtaaccaaaatatcattcattgttctgaaacatgaattaattttcaca |
344 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
45980903 |
aaaaggattgacaacaataaaatggacatttctgctatatatgcttctaaaggtaaccaaaatattattcattgttct---acatgaattaattttcaca |
45980807 |
T |
|
| Q |
345 |
ggttgaacttcttagttctgagttgaacatttctggttgcaggcatctctaatacaaaa |
403 |
Q |
| |
|
|| || ||||||||| ||||||||||||| |||||||| |||||||||||||| |
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|
| T |
45980806 |
gg-------tcatagttctgaattgaacatttctgcttgcaggcctctctaatacaaaa |
45980755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 54 - 208
Target Start/End: Complemental strand, 45970139 - 45969985
Alignment:
| Q |
54 |
atgaattattattttctgattaaaattaacaaaaaattattagctaacattatatgttaaactttaagtcagtagatttttacatttatgattgtgttcc |
153 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45970139 |
atgaattattattttctgattaaaattaacaaaaaattattagctaacgttatatgttaaactttaagtcagtagatttttacatttatgattgtgttcc |
45970040 |
T |
|
| Q |
154 |
tgtagagattatgacaaccccctcagaacttcgaatgaagatgggaaaggttgat |
208 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
45970039 |
tgtagagattatgacaaccccctcggaacttcgaatgaagatgggaaaggttgat |
45969985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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