View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18163_low_6 (Length: 407)

Name: NF18163_low_6
Description: NF18163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18163_low_6
NF18163_low_6
[»] chr2 (5 HSPs)
chr2 (137-398)||(41898745-41899006)
chr2 (56-201)||(41892598-41892743)
chr2 (18-62)||(41899013-41899057)
chr2 (81-113)||(17508848-17508880)
chr2 (81-113)||(38500219-38500251)
[»] chr1 (9 HSPs)
chr1 (153-398)||(2414973-2415218)
chr1 (56-203)||(2410138-2410285)
chr1 (191-389)||(52986344-52986541)
chr1 (245-379)||(27203683-27203817)
chr1 (176-314)||(27203544-27203682)
chr1 (236-395)||(52673214-52673373)
chr1 (50-168)||(1302410-1302528)
chr1 (203-241)||(6430018-6430056)
chr1 (81-113)||(1286200-1286232)
[»] chr6 (1 HSPs)
chr6 (117-396)||(7812560-7812839)
[»] chr3 (5 HSPs)
chr3 (191-396)||(50061100-50061305)
chr3 (82-115)||(28096008-28096041)
chr3 (191-265)||(45841587-45841659)
chr3 (193-239)||(27470567-27470613)
chr3 (81-113)||(50056893-50056925)
[»] chr5 (3 HSPs)
chr5 (56-203)||(2737965-2738112)
chr5 (76-191)||(32856343-32856458)
chr5 (275-352)||(4463962-4464039)
[»] scaffold0057 (1 HSPs)
scaffold0057 (175-351)||(29346-29522)
[»] scaffold0118 (2 HSPs)
scaffold0118 (193-396)||(18586-18788)
scaffold0118 (81-114)||(18866-18899)
[»] chr7 (4 HSPs)
chr7 (220-345)||(39895411-39895534)
chr7 (57-168)||(3008906-3009025)
chr7 (97-160)||(3000857-3000920)
chr7 (81-113)||(29443644-29443676)
[»] chr4 (2 HSPs)
chr4 (65-124)||(7019941-7020000)
chr4 (56-203)||(6721078-6721224)
[»] scaffold0245 (1 HSPs)
scaffold0245 (81-113)||(12467-12499)


Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 137 - 398
Target Start/End: Complemental strand, 41899006 - 41898745
Alignment:
Q  137 gactaataaactaatgggcccaatacaaataatcaccgataataattaaaataaactatttccaacactccccctcaagctgatgaatgaatatcaatca 236  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  41899006 gactaataaactaatgggcccaatacaaataatcactaataataattaaaataaactatttccaacaccccccctcaagctggtgaatgaatatcaatca 41898907  T
Q  237 ttcccagtttggaaacaaacttttcaaagctattgttgttcagcccctttgttagaagatctgcaaggttgccttgggaagagacatatggagtgcaaat 336  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41898906 ttcccaatttggaaacaaacttttcaaagttattgttgttcagcccctttgttagaagatctgcaaggttgccttgggaagagacatatggagtgcaaat 41898807  T
Q  337 tagaccactgtctaaattttctttgataaagtgtctgtcaacttcaatatgtttggttctgt 398  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41898806 tagaccactgtctaacttttctttgataaagtgtctgtcaacttcaatatgtttggttctgt 41898745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 56 - 201
Target Start/End: Complemental strand, 41892743 - 41892598
Alignment:
Q  56 gaaaactggatatattttaaagttctaaataatttacaaccactaatgtgtttatataagttaatgtaatttgataggcaagactaataaactaatgggc 155  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||| ||||| ||||||||||||||||||||||||    
T  41892743 gaaaactgaatatattttaaagttctaaataatttacaatcactaatgtgtttatataggctaatgtaacttgatgggcaagactaataaactaatgggc 41892644  T
Q  156 ccaatacaaataatcaccgataataattaaaataaactatttccaa 201  Q
    |||||||||||||||||  |||||||||||||||||||||||||||    
T  41892643 ccaatacaaataatcactaataataattaaaataaactatttccaa 41892598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 41899057 - 41899013
Alignment:
Q  18 agcaaggaacttaacaaatgaataaatatagtatatgggaaaact 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  41899057 agcaaggaacttaacaaatgaataaatatagtatatgggaaaact 41899013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 17508880 - 17508848
Alignment:
Q  81 taaataatttacaaccactaatgtgtttatata 113  Q
    |||||||| ||||||||||||||||||||||||    
T  17508880 taaataatgtacaaccactaatgtgtttatata 17508848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 38500251 - 38500219
Alignment:
Q  81 taaataatttacaaccactaatgtgtttatata 113  Q
    |||||||| ||||||||||||||||||||||||    
T  38500251 taaataatgtacaaccactaatgtgtttatata 38500219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 153 - 398
Target Start/End: Complemental strand, 2415218 - 2414973
Alignment:
Q  153 ggcccaatacaaataatcaccgataataattaaaataaactatttccaacactccccctcaagctgatgaatgaatatcaatcattcccagtttggaaac 252  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  2415218 ggcccaatacaaataatcactaataataattaaaataaactatttccaacactccccctcaagctggtgaatgaatatcaatcattcccagcttggaaac 2415119  T
Q  253 aaacttttcaaagctattgttgttcagcccctttgttagaagatctgcaaggttgccttgggaagagacatatggagtgcaaattagaccactgtctaaa 352  Q
    ||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  2415118 aaatttttcaaagttattgttgttcagcctctttgttagaagatctgcaaggttgtcttgggaagagacatatggagtgcaaattagaccactgtctaac 2415019  T
Q  353 ttttctttgataaagtgtctgtcaacttcaatatgtttggttctgt 398  Q
    |||||||||||||||||| ||| |||||||| ||||||||||||||    
T  2415018 ttttctttgataaagtgtttgttaacttcaagatgtttggttctgt 2414973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 56 - 203
Target Start/End: Complemental strand, 2410285 - 2410138
Alignment:
Q  56 gaaaactggatatattttaaagttctaaataatttacaaccactaatgtgtttatataagttaatgtaatttgataggcaagactaataaactaatgggc 155  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||| |||||||||||||||| |||||||    
T  2410285 gaaaactgaatgtattttaaagttctaaataatttacaaccactaatgtgtttatataggctaatgtaacttgatgggcaagactaataaacaaatgggc 2410186  T
Q  156 ccaatacaaataatcaccgataataattaaaataaactatttccaaca 203  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||    
T  2410185 ccaatacaaataatcactaataataattaaaataaactatttccaaca 2410138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 191 - 389
Target Start/End: Complemental strand, 52986541 - 52986344
Alignment:
Q  191 actatttccaacactccccctcaagctgatgaatgaatatcaatcattcccagtttggaaacaaacttttcaaagctattgttgttcagcccctttgtta 290  Q
    ||||||| |||||||||||||||||||  ||||| |||||| |||||||| || | ||||||||   |||||||| | | ||||||||   |||| ||||    
T  52986541 actatttacaacactccccctcaagctagtgaattaatatctatcattcctagctaggaaacaattctttcaaagttctcgttgttcaataccttagtta 52986442  T
Q  291 gaagatctgcaaggttgccttgggaagagacatatggagtgcaaattagaccactgtctaaattttctttgataaagtgtctgtcaacttcaatatgtt 389  Q
    ||| ||||||||| ||||||||||||||||  ||||||||||||||||||||||| || || ||||||||||| |||||| ||| ||||||||||||||    
T  52986441 gaatatctgcaagattgccttgggaagagatctatggagtgcaaattagaccactatcgaatttttctttgatgaagtgtatgt-aacttcaatatgtt 52986344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 245 - 379
Target Start/End: Original strand, 27203683 - 27203817
Alignment:
Q  245 ttggaaacaaacttttcaaagctattgttgttcagcccctttgttagaagatctgcaaggttgccttgggaagagacatatggagtgcaaattagaccac 344  Q
    |||||||||| | |||||||||||||| || |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||| ||| ||||    
T  27203683 ttggaaacaatcctttcaaagctattgctggtcagccccttagttagaagatcagcaaggttgccttgggaagagacatatggagtgtaaactaggccac 27203782  T
Q  345 tgtctaaattttctttgataaagtgtctgtcaact 379  Q
    | ||||| |||||||||||  | ||||||||||||    
T  27203783 tctctaacttttctttgatggaatgtctgtcaact 27203817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 176 - 314
Target Start/End: Original strand, 27203544 - 27203682
Alignment:
Q  176 taataattaaaataaactatttccaacactccccctcaagctgatgaatgaatatcaatcattcccagtttggaaacaaacttttcaaagctattgttgt 275  Q
    ||||||| |||||| | ||||| ||||||| | |||||||||| |||||||||||| ||||||||||| |||||||||| | |||||||||||||| ||     
T  27203544 taataataaaaatacattatttacaacacttctcctcaagctggtgaatgaatatctatcattcccagcttggaaacaatcatttcaaagctattgctgg 27203643  T
Q  276 tcagcccctttgttagaagatctgcaaggttgccttggg 314  Q
    |||||||||| | ||||||||| ||||||||||||||||    
T  27203644 tcagccccttaggtagaagatcagcaaggttgccttggg 27203682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 236 - 395
Target Start/End: Original strand, 52673214 - 52673373
Alignment:
Q  236 attcccagtttggaaacaaacttttcaaagctattgttgttcagcccctttgttagaagatctgcaaggttgccttgggaagagacatatggagtgcaaa 335  Q
    |||| ||| ||||||||||   |||||||| |  || ||||||||||||| || |||||||||||| ||||||||||||| |||| |||||| || ||||    
T  52673214 attctcagcttggaaacaatactttcaaagttgatgctgttcagccccttagtcagaagatctgcatggttgccttgggaggagatatatggggtacaaa 52673313  T
Q  336 ttagaccactgtctaaattttctttgataaagtgtctgtcaacttcaatatgtttggttc 395  Q
    |||| ||||| ||||| |||||| |||| ||||| |||||||||||||||||||||||||    
T  52673314 ttaggccactatctaatttttctatgatgaagtgcctgtcaacttcaatatgtttggttc 52673373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 168
Target Start/End: Original strand, 1302410 - 1302528
Alignment:
Q  50 atatgggaaaactggatatattttaaagttctaaataatttacaaccactaatgtgtttatataagttaatgtaatttgataggcaagactaataaacta 149  Q
    ||||| |||| ||| |||||||| ||| |||| ||||||||||||||||||||||||||||||| |  |||||||  | || ||| ||| ||||||||||    
T  1302410 atatgtgaaacctgaatatatttcaaatttctgaataatttacaaccactaatgtgtttatataggccaatgtaacctaatgggccagattaataaacta 1302509  T
Q  150 atgggcccaatacaaataa 168  Q
    | ||||  |||||||||||    
T  1302510 aagggctgaatacaaataa 1302528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 6430018 - 6430056
Alignment:
Q  203 actccccctcaagctgatgaatgaatatcaatcattccc 241  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  6430018 actccccctcaagctggtgaatgaatatctatcattccc 6430056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 1286200 - 1286232
Alignment:
Q  81 taaataatttacaaccactaatgtgtttatata 113  Q
    |||||||| ||||||||||||||||||||||||    
T  1286200 taaataatgtacaaccactaatgtgtttatata 1286232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 117 - 396
Target Start/End: Original strand, 7812560 - 7812839
Alignment:
Q  117 taatgtaatttgataggcaagactaataaactaatgggcccaatacaaataatcaccgataataattaaaataaactatttccaacactccccctcaagc 216  Q
    |||| ||| ||||| |||||||||||||||||||||| ||||| |||| |||||||  ||||||||||||||||||||||| ||| ||||||| ||||||    
T  7812560 taatataacttgatgggcaagactaataaactaatggacccaaaacaactaatcactaataataattaaaataaactatttacaatactccccgtcaagc 7812659  T
Q  217 tgatgaatgaatatcaatcattcccagtttggaaacaaacttttcaaagctattgttgttcagcccctttgttagaagatctgcaaggttgccttgggaa 316  Q
    || |||||||||||||||| ||||||   |||||||||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  7812660 tggtgaatgaatatcaatctttcccatcatggaaacaaatttttcaaagttattattgttcaacccctttgttagaagatctgcaaggttgccttgggaa 7812759  T
Q  317 gagacatatggagtgcaaattagaccactgtctaaattttctttgataaagtgtctgtcaacttcaatatgtttggttct 396  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  7812760 gagacgtatggagtgcaaattagaccactgtctaacttttctttgataaaatgtctgtcaacttcaatatgtttggttct 7812839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 191 - 396
Target Start/End: Complemental strand, 50061305 - 50061100
Alignment:
Q  191 actatttccaacactccccctcaagctgatgaatgaatatcaatcattcccagtttggaaacaaacttttcaaagctattgttgttcagcccctttgtta 290  Q
    ||||||| |||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||   |||||||| | ||||||||||| ||||| ||||    
T  50061305 actatttacaacactccccctcaagctggtgaatgaatatctatcattcccagcttggaaacaattctttcaaagtttttgttgttcagtcccttagtta 50061206  T
Q  291 gaagatctgcaaggttgccttgggaagagacatatggagtgcaaattagaccactgtctaaattttctttgataaagtgtctgtcaacttcaatatgttt 390  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||| ||||| ||||| ||||||| ||||||||||||||||||    
T  50061205 gaagatctgcaagattgccttgggaagagatatatggagtgcaaattagaccactatctaatttttccttgatgaagtgtcggtcaacttcaatatgttt 50061106  T
Q  391 ggttct 396  Q
    ||||||    
T  50061105 ggttct 50061100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 28096008 - 28096041
Alignment:
Q  82 aaataatttacaaccactaatgtgtttatataag 115  Q
    ||||||||||||||||||||||||||||||||||    
T  28096008 aaataatttacaaccactaatgtgtttatataag 28096041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 265
Target Start/End: Original strand, 45841587 - 45841659
Alignment:
Q  191 actatttccaacactccccctcaagctgatgaatgaatatcaatcattcccagtttggaaacaaacttttcaaag 265  Q
    ||||||| ||||||||||||||||| || ||  |||||||| |||| |||||| |||||||||| | ||||||||    
T  45841587 actatttacaacactccccctcaagatggtg--tgaatatctatcactcccagcttggaaacaatcctttcaaag 45841659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 27470613 - 27470567
Alignment:
Q  193 tatttccaacactccccctcaagctgatgaatgaatatcaatcattc 239  Q
    ||||| ||||||| ||||||||||||||||||| ||| |||||||||    
T  27470613 tatttacaacacttcccctcaagctgatgaatgtataccaatcattc 27470567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 50056925 - 50056893
Alignment:
Q  81 taaataatttacaaccactaatgtgtttatata 113  Q
    |||||||| ||||||||||||||||||||||||    
T  50056925 taaataatgtacaaccactaatgtgtttatata 50056893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 56 - 203
Target Start/End: Original strand, 2737965 - 2738112
Alignment:
Q  56 gaaaactggatatattttaaagttctaaataatttacaaccactaatgtgtttatataagttaatgtaatttgataggcaagactaataaactaatgggc 155  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||| ||||| |||||||||| |||||||||||||    
T  2737965 gaaaactgaatatatttcaaagttctaaataatttacaaccactaatgtgtttatataggctaatgtaacttgatgggcaagactactaaactaatgggc 2738064  T
Q  156 ccaatacaaataatcaccgataataattaaaataaactatttccaaca 203  Q
    |||||||| |||| |||  |||||| |||||| ||| ||||| |||||    
T  2738065 ccaatacacataaccactaataatacttaaaagaaattatttacaaca 2738112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 76 - 191
Target Start/End: Complemental strand, 32856458 - 32856343
Alignment:
Q  76 agttctaaataatttacaaccactaatgtgtttatataagttaatgtaatttgataggcaagactaataaactaatgggcccaatacaaataatcaccga 175  Q
    ||||||||| ||||||||||||| |||||||||||||| | |||||||| ||||| |||||||||| || |||||||| ||||||||| |||| |||  |    
T  32856458 agttctaaaaaatttacaaccaccaatgtgtttatataggctaatgtaacttgatgggcaagactattatactaatggccccaatacacataaccactaa 32856359  T
Q  176 taataattaaaataaa 191  Q
    ||||| ||||||||||    
T  32856358 taatacttaaaataaa 32856343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 352
Target Start/End: Original strand, 4463962 - 4464039
Alignment:
Q  275 ttcagcccctttgttagaagatctgcaaggttgccttgggaagagacatatggagtgcaaattagaccactgtctaaa 352  Q
    ||||||||||| ||||||||| ||| |||||| |||||||| |||| ||||||||||||  |||| ||||| ||||||    
T  4463962 ttcagccccttagttagaagacctgtaaggttaccttgggaggagatatatggagtgcagcttaggccactatctaaa 4464039  T

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Target: scaffold0057 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 175 - 351
Target Start/End: Complemental strand, 29522 - 29346
Alignment:
Q  175 ataataattaaaataaactatttccaacactccccctcaagctgatgaatgaatatcaatcattcccagtttggaaacaaacttttcaaagctattgttg 274  Q
    |||||||| |||||| | ||||  |||||||||||||||||||  ||||||| |||| ||||||| ||| ||| ||||||   |||| ||  ||||||||    
T  29522 ataataataaaaatatattattcacaacactccccctcaagcttgtgaatgagtatctatcattcacagcttgaaaacaattctttccaatttattgttg 29423  T
Q  275 ttcagcccctttgttagaagatctgcaaggttgccttgggaagagacatatggagtgcaaattagaccactgtctaa 351  Q
    |||| ||| || ||| |||||||||||||||||||||||||||||||||||  ||||||||||| |||||| |||||    
T  29422 ttcaacccattagttggaagatctgcaaggttgccttgggaagagacatatacagtgcaaattaaaccactatctaa 29346  T

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Target: scaffold0118 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 193 - 396
Target Start/End: Complemental strand, 18788 - 18586
Alignment:
Q  193 tatttccaacactccccctcaagctgatgaatgaatatcaatcattcccagtttggaaacaaacttttcaaagctattgttgttcagcccctttgttaga 292  Q
    ||||| |||||||||||| ||||||| |||||| ||||| |||||||| |  ||||||||||   |||||||| | ||||||| ||| |  || ||||||    
T  18788 tatttacaacactcccccacaagctggtgaatggatatctatcattccgaacttggaaacaattctttcaaagattttgttgt-cagtcttttagttaga 18690  T
Q  293 agatctgcaaggttgccttgggaagagacatatggagtgcaaattagaccactgtctaaattttctttgataaagtgtctgtcaacttcaatatgtttgg 392  Q
    |||| | |||| |||||||||||||||  |||||||||||||||||||||||  ||||| ||||||||||| || |||  ||||| |||| |||||||||    
T  18689 agattttcaagattgccttgggaagaggtatatggagtgcaaattagaccaccatctaatttttctttgatgaaatgttggtcaatttcattatgtttgg 18590  T
Q  393 ttct 396  Q
    ||||    
T  18589 ttct 18586  T

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Target: scaffold0118; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 114
Target Start/End: Complemental strand, 18899 - 18866
Alignment:
Q  81 taaataatttacaaccactaatgtgtttatataa 114  Q
    |||||||| |||||||||||||||||||||||||    
T  18899 taaataatgtacaaccactaatgtgtttatataa 18866  T

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Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 220 - 345
Target Start/End: Complemental strand, 39895534 - 39895411
Alignment:
Q  220 tgaatgaatatcaatcattcccagtttggaaacaaacttttcaaagctattgttgttcagcccctttgttagaagatctgcaaggttgccttgggaagag 319  Q
    |||||||||||| ||| ||||||  ||||||||||   |||||||||||||||||||||||||||| ||||| | |||||||||||||||||  ||  ||    
T  39895534 tgaatgaatatctatcgttcccaacttggaaacaattctttcaaagctattgttgttcagccccttggttagtaaatctgcaaggttgccttaaga--ag 39895437  T
Q  320 acatatggagtgcaaattagaccact 345  Q
    ||||  ||||||||||||||||||||    
T  39895436 acatgcggagtgcaaattagaccact 39895411  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 168
Target Start/End: Complemental strand, 3009025 - 3008906
Alignment:
Q  57 aaaactggatatattttaaagttctaaataatttacaaccac--------taatgtgtttatataagttaatgtaatttgataggcaagactaataaact 148  Q
    ||||||| |||||||| |||||||| ||||||||||||||||        ||||||||||||| | | |||||||| || |  | |||||||||||||||    
T  3009025 aaaactgaatatatttcaaagttctcaataatttacaaccacctgtccactaatgtgtttatagaggctaatgtaacttaacggtcaagactaataaact 3008926  T
Q  149 aatgggcccaatacaaataa 168  Q
    ||||||||||||||| ||||    
T  3008925 aatgggcccaatacacataa 3008906  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 3000920 - 3000857
Alignment:
Q  97 actaatgtgtttatataagttaatgtaatttgataggcaagactaataaactaatgggcccaat 160  Q
    ||||||||||||||||||| | |||||| || || |||||||| ||||||||||||| ||||||    
T  3000920 actaatgtgtttatataagctgatgtaacttaatgggcaagaccaataaactaatggacccaat 3000857  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 29443644 - 29443676
Alignment:
Q  81 taaataatttacaaccactaatgtgtttatata 113  Q
    |||||||| ||||||||||||||||||||||||    
T  29443644 taaataatatacaaccactaatgtgtttatata 29443676  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 7019941 - 7020000
Alignment:
Q  65 atatattttaaagttctaaataatttacaaccactaatgtgtttatataagttaatgtaa 124  Q
    |||||||| |||||||| ||||||||||||||||||||||| ||||||| | ||||||||    
T  7019941 atatatttcaaagttctgaataatttacaaccactaatgtgattatataggctaatgtaa 7020000  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 203
Target Start/End: Complemental strand, 6721224 - 6721078
Alignment:
Q  56 gaaaactggatatattttaaagttctaaataatttacaaccactaatgtgtttatataagttaatgtaatttgataggcaagactaataaactaatgggc 155  Q
    |||||||  |||||||| |||||||| | ||||||||||||| ||||| ||||||||| ||| |||||| || ||    ||||||||||||||||| |||    
T  6721224 gaaaactaaatatatttcaaagttctgagtaatttacaaccagtaatgagtttatataggttgatgtaacttaat---gaagactaataaactaat-ggc 6721129  T
Q  156 ccaatacaaataatc---accgataataattaaaataaactatttccaaca 203  Q
    || | ||| |||| |   || |||||||||||||||||| ||||| |||||    
T  6721128 cctagacacataaccactactgataataattaaaataaattatttacaaca 6721078  T

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Target: scaffold0245 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 12467 - 12499
Alignment:
Q  81 taaataatttacaaccactaatgtgtttatata 113  Q
    |||||||| ||||||||||||||||||||||||    
T  12467 taaataatgtacaaccactaatgtgtttatata 12499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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