View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18163_low_8 (Length: 370)
Name: NF18163_low_8
Description: NF18163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18163_low_8 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 3110173 - 3110543
Alignment:
| Q |
1 |
ctctataggtgcattactcgctttacatcgttcgagcagcttatatcccacatcagacatgttatttttacacaacccctcaatataagcagcgtaacaa |
100 |
Q |
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| T |
3110173 |
ctctataggtgcattactcgctctacatcgttcgagcagcttatatcccacatcagacatgttatttttacacaacccctcaatataagcagcgtaacaa |
3110272 |
T |
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| Q |
101 |
tacgaattcagagtcacaccagcttcctccatttcatcaaatacatattccacatgtttcaaatcatcactattcttacacaag-ccttgataacaatag |
199 |
Q |
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| T |
3110273 |
tacgaattcggagtcacaccagcttcctccatttcatcaaatacatattccacgtgtttcaaatcatcactattcttacacaagcccttgataacaatag |
3110372 |
T |
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| Q |
200 |
cataagtgtgatgattaggagacaaaccaaccctcttgatttcattataaacctccaaagccattttcactttatcatgttgaactaaacggttaataag |
299 |
Q |
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| T |
3110373 |
cataagtgtgatgattaggacacaaaccaaccctcttgatttctttataaacctccaaagccattttcactttatcatgttgaattaaacggttaataag |
3110472 |
T |
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| Q |
300 |
aaagttacaagcaacaatactaggaagaatctcaaacctagtaacttgaaaatgaaacaagaaatcaaatg |
370 |
Q |
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| T |
3110473 |
aaagttacaagcaacaatactaggaagaatctcaaacctagtaacttgaaaatgaaacaagaaatcaaatg |
3110543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 43 - 367
Target Start/End: Complemental strand, 41626648 - 41626323
Alignment:
| Q |
43 |
atatcccacatcagacatgttatttttacacaacccctcaatataagcagcgtaacaatacgaattcagagtcacaccagcttcctccatttcatcaaat |
142 |
Q |
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| T |
41626648 |
atatcccaaatcagactgatgattattacacaacccctcaatataagctgcatagcaatacgaattcggagtcaccccagcttctttcatttcatcaaac |
41626549 |
T |
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| Q |
143 |
acatattccacatgtttcaaatcatcactattcttacacaa-gccttgataacaatagcataagtgtgatgattaggagacaaaccaaccctcttgattt |
241 |
Q |
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| T |
41626548 |
acaccagacgcctgtttcaaatcaccgcccttcgtacccaacgccttaatgataatggcataagtgtgatggttaggacacaaacccagactcttgattc |
41626449 |
T |
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| Q |
242 |
cattataaacctccaaagccattttcactttatcatgttgaactaaacggttaataagaaagttacaagcaacaatactaggaagaatctcaaacctagt |
341 |
Q |
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| T |
41626448 |
ggtcgaaaatctcgaaagccatatttacttgatcacatttaaccaaacggttaataagaaagttacaggcaaaaatatttggaagaatcccaaacctcct |
41626349 |
T |
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| Q |
342 |
aacttgaaaatgaaacaagaaatcaa |
367 |
Q |
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|| |||||| ||||| |||||||| |
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| T |
41626348 |
aatttgaaacataaacatgaaatcaa |
41626323 |
T |
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