View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18164_high_2 (Length: 514)
Name: NF18164_high_2
Description: NF18164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18164_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 2567858 - 2568067
Alignment:
| Q |
16 |
atattgcatttatttatattgtaattatcttgtgtggagctatcatattcataggaccagaaaagaaagaaatagaggccagggttcttggacttggacc |
115 |
Q |
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| T |
2567858 |
atattgcatttatttatattgtaattatcttgtgtggagctatcatattcataggaccagaaaagaaagaaatagaggccagggttcttggacttggacc |
2567957 |
T |
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| Q |
116 |
ccatgccaccttgttgtccatgttcaactttgtgggtaaggattttccaacaaaagccattagaaatattttgaaatacatcgtctttatataagtcggt |
215 |
Q |
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| T |
2567958 |
ccatgccaccttgttgtccatgttcaattttgtgggtaaggattttccaacaaaagccattagaaatattttgaaatacatcgtctttatataagtcggt |
2568057 |
T |
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| Q |
216 |
taaatcagac |
225 |
Q |
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|||||||||| |
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| T |
2568058 |
taaatcagac |
2568067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 301 - 498
Target Start/End: Original strand, 2568086 - 2568285
Alignment:
| Q |
301 |
cctattgacacgcttaaacattattttgatgcaacaattataaatatccgatcatattcacaataatattatctaatttttatattgttgtaatgtattc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2568086 |
cctattgacacgcttaaacattattttgatgcaacaattataaatatccgatcatattcacaataatattatctaatttttatattgttgtaatgtattc |
2568185 |
T |
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| Q |
401 |
ttgcaaaacttgtaaacttgtttgtaagggtatgaaaatc-nnnnnnnnag-aaactaataaattcttttcaagttttatctttttcaaacgcggagatt |
498 |
Q |
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| T |
2568186 |
ttgcaaaacttgtaaacttgtttgtaagggtatgaaaatctttttttttagtaaactaataaattcttttcaagttttatctttttcatacgcggagatt |
2568285 |
T |
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