View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18164_high_6 (Length: 305)
Name: NF18164_high_6
Description: NF18164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18164_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 283
Target Start/End: Original strand, 8695651 - 8695922
Alignment:
| Q |
12 |
atcatcacacaatagttttcaaacgacttcacaactgcattgacaagttcatcaatagttttaggtgcttccttgtaatgcaatgattgtatagcactga |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8695651 |
atcaccacacaatagttttcaaacgacttcacaactgcattgacaagttcatcaatagttttaggtgcttccttgtaatgcaatgattgtatagcactga |
8695750 |
T |
|
| Q |
112 |
aaaatccaaggtgcaagacattaaaatctagcgaattaggaggctgacacattaaacggatgtcaaatccatcttgtgtggctgcctgaataaattcagg |
211 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8695751 |
aaaatccaaggtcgaagacattaaaatctggcgaattaggaggctgacacattaaacggatgtcaaatccatcttgtgtggctgcctgaataaattcagg |
8695850 |
T |
|
| Q |
212 |
atcatcaggattaatatgagttcttgcattatcttgttgaatgaatattgttgaccccaattcgtctcttgg |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8695851 |
atcatcaggattaatatgagttcttgcattatcttgttgaatgaatattgttgaccccaattcgtctcttgg |
8695922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 27025810 - 27025851
Alignment:
| Q |
142 |
gcgaattaggaggctgacacattaaacggatgtcaaatccat |
183 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
27025810 |
gcgaattcggaggctgacacattaaacggatatcaaatccat |
27025851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 166
Target Start/End: Complemental strand, 384769 - 384658
Alignment:
| Q |
54 |
acaagttcatcaatagttttaggtgcttccttgtaatgcaatgattgtatagcactgaaaaatccaaggtgcaagacattaaaatctagcgaattaggag |
153 |
Q |
| |
|
|||||||||||||||||||| || |||| |||||| || ||||| || || ||||| ||||| ||||||| |||||||| | ||| | ||||| |||| |
|
|
| T |
384769 |
acaagttcatcaatagtttttggagctt-cttgtattgtaatgactgaatcgcactaaaaaacccaaggtctaagacatttagatcaggggaatttggag |
384671 |
T |
|
| Q |
154 |
gctgacacattaa |
166 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
384670 |
gttgacacattaa |
384658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 7 - 286
Target Start/End: Original strand, 34223435 - 34223714
Alignment:
| Q |
7 |
tggacatcatcacacaatagttttcaaacgacttcacaactgcattgacaagttcatcaatagttttaggtgcttccttgtaatgcaatgattgtatagc |
106 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34223435 |
tggacttcaccacacaatagttttcaaacgacttcacaactgcattgacaagttcatcaatagttttaggtgcttccttgtaatgcaatgattgtatagc |
34223534 |
T |
|
| Q |
107 |
actgaaaaatccaaggtgcaagacattaaaatctagcgaattaggaggctgacacattaaacggatgtcaaatccatcttgtgtggctgcctgaataaat |
206 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34223535 |
actgaaaaatccaaggtccaagacattaaaatctggcgaattaggaggctgacacattaaacggatgtcaaatccatcttgtgtggctgcctgaataaat |
34223634 |
T |
|
| Q |
207 |
tcaggatcatcaggattaatatgagttcttgcattatcttgttgaatgaatattgttgaccccaattcgtctcttggcca |
286 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||| |
|
|
| T |
34223635 |
tcaggatcattaggattaatatgagttcttgcattatcttgttgaatgaatatcgttgatcccaattcgtctcttagcca |
34223714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 10114195 - 10114154
Alignment:
| Q |
142 |
gcgaattaggaggctgacacattaaacggatgtcaaatccat |
183 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
10114195 |
gcgaattcggaggctgacacattaaacggatatcaaatccat |
10114154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 182
Target Start/End: Complemental strand, 10328713 - 10328585
Alignment:
| Q |
54 |
acaagttcatcaatagttttaggtgcttccttgtaatgcaatgattgtatagcactgaaaaatccaaggtgcaagacattaaaatctagcgaattaggag |
153 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||| || ||||| || || ||||| ||||| ||||||| |||||||| | ||| | ||||| |||| |
|
|
| T |
10328713 |
acaagttcatcaatagtttttgcagcttccttgtattgtaatgactgaatcgcactaaaaaacccaaggtctaagacatttagatcaggagaatttggag |
10328614 |
T |
|
| Q |
154 |
gctgacacattaaacggatgtcaaatcca |
182 |
Q |
| |
|
| ||||||||||| || || ||||||||| |
|
|
| T |
10328613 |
gttgacacattaagcgaatatcaaatcca |
10328585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 287
Target Start/End: Original strand, 30460924 - 30460987
Alignment:
| Q |
224 |
aatatgagttcttgcattatcttgttgaatgaatattgttgaccccaattcgtctcttggccat |
287 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||| ||||| | || |||||||||||| |
|
|
| T |
30460924 |
aatatgtgttcttgcattgtcttgttgaatgaatattggagaccctatatcctctcttggccat |
30460987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 166
Target Start/End: Complemental strand, 37934327 - 37934215
Alignment:
| Q |
54 |
acaagttcatcaatagttttaggtgcttccttgtaatgcaatgattgtatagcactgaaaaatccaaggtgcaagacattaaaatctagcgaattaggag |
153 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||| || ||||| || || ||||| ||||| ||||||| |||||||| | ||| | ||||| |||| |
|
|
| T |
37934327 |
acaagttcatcaatagtttttgcagcttccttgtattgtaatgactgaatcgcactaaaaaacccaaggtctaagacatttagatcaggagaatttggag |
37934228 |
T |
|
| Q |
154 |
gctgacacattaa |
166 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
37934227 |
gttgacacattaa |
37934215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 260
Target Start/End: Original strand, 36913428 - 36913659
Alignment:
| Q |
29 |
ttcaaacgacttcacaactgcattgacaagttcatcaatagttttaggtgcttccttgtaatgcaatgattgtatagcactgaaaaatccaaggtgcaag |
128 |
Q |
| |
|
|||||| || |||||||| ||||| ||||| || |||| || ||||||||| | ||| | || || ||||| ||||| |||||||||||||| | ||| |
|
|
| T |
36913428 |
ttcaaatgatttcacaaccgcattcacaagctcgtcaacagatttaggtgccttcttatgttgtaaagattgaatagctctgaaaaatccaagatccaaa |
36913527 |
T |
|
| Q |
129 |
acattaaaatctagcgaattaggaggctgacacattaaacggatgtcaaatccatcttgtgtggctgcctgaataaattcaggatcatcaggattaatat |
228 |
Q |
| |
|
| ||| |||||| | || || | |||||||||||||| || || |||||||||| ||||| ||||| | ||| || ||||||| | |||| | |
|
|
| T |
36913528 |
atatttaaatctggagagtttgcaggctgacacattagtcgaatatcaaatccattttgtgaagctgctctacaaaaatcttcatcatcacaactaatgt |
36913627 |
T |
|
| Q |
229 |
gagttcttgcattatcttgttgaatgaatatt |
260 |
Q |
| |
|
||||||||||||| ||||||||||| |||||| |
|
|
| T |
36913628 |
gagttcttgcattgtcttgttgaataaatatt |
36913659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 33021583 - 33021624
Alignment:
| Q |
142 |
gcgaattaggaggctgacacattaaacggatgtcaaatccat |
183 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
33021583 |
gcgaattcggaggctgacacattaaacggatatcaaatccat |
33021624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 189
Target Start/End: Complemental strand, 17651115 - 17650986
Alignment:
| Q |
60 |
tcatcaatagttttaggtgcttccttgtaatgcaatgattgtatagcactgaaaaatccaaggtgcaagacattaaaatctagcgaattaggaggctgac |
159 |
Q |
| |
|
||||||||||| || |||| |||||| | |||| |||||| || |||||||| || ||||||| |||||||| | || || ||||| ||||| |||| |
|
|
| T |
17651115 |
tcatcaatagtcttcggtgtttccttatgttgcagtgattgaatggcactgaagaagccaaggtctaagacatttagttcaagggaattgggaggttgac |
17651016 |
T |
|
| Q |
160 |
acattaaacggatgtcaaatccatcttgtg |
189 |
Q |
| |
|
|||| || || ||||| || |||||||||| |
|
|
| T |
17651015 |
acatcaatcgaatgtcgaaaccatcttgtg |
17650986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University