View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18164_low_13 (Length: 210)
Name: NF18164_low_13
Description: NF18164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18164_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 45185633 - 45185820
Alignment:
| Q |
19 |
ctagtatactagccaaatgcacaacaacaatgacatagatgtaatgaaatatggtataaatgcaatttgttaaacaagt-aatcaaaattctgaaattgt |
117 |
Q |
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| T |
45185633 |
ctagtatactagccaaatgcacaacaacaatgacatagatgtaatgaaatatggtataaatgcaatttgttaaacaagtaaatcaaaattctgaaattgt |
45185732 |
T |
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| Q |
118 |
aatgaaacat----nnnnnnntaaatgaaatgcaatattaaaagtaatgaattgagtttaaacgaaccccttctttctccatgatgat |
201 |
Q |
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| T |
45185733 |
aatgaaacataaaaaaaaaaaaaaatgaaatgcaatattaaaagtaatgaattgagtttaaacgaaccccttctttctccatgatgat |
45185820 |
T |
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