View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18164_low_2 (Length: 634)
Name: NF18164_low_2
Description: NF18164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18164_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 595; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 18 - 624
Target Start/End: Complemental strand, 37903667 - 37903061
Alignment:
| Q |
18 |
ataatgaggtgaagttagtttccttgttttttactcgttcagcatagtatgtggccctttattaatcattgatgcctggtgatatgctgcctctgacata |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37903667 |
ataatgaggtgaagttagtttccttgttttttactcgttcagcatagtatgtggccctttattaatcattgatgcctggtgatatgctgcctctgacata |
37903568 |
T |
|
| Q |
118 |
actgctttgtatgacaggacaatgttgcggttataattaaggctggtggttttcaaaaactgcatgatggacatttcaacgctcaagtacgttcatttgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37903567 |
actgctttgtatgacaggacaatgttgcggttataattaaggctggtggttttcaaaaactgcatgatggacatttcaacgctcaagtacgttcatttgc |
37903468 |
T |
|
| Q |
218 |
tctttgtagcacagtgctacaatatgttcacatttaattttctgtcatttcttctttggaatgataatttagttgtttgtttatcaaggtaatagaacct |
317 |
Q |
| |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37903467 |
tctttgcagcacagtactacaatatgttcacatttaattttctgtcatttcttctttggaatgataatttagttgtttgtttatcaaggtaatagaacct |
37903368 |
T |
|
| Q |
318 |
cttcttctcactaatttataatcaatttagtttcattatcattgttgtttgacttgcagccttctcaagagtgtgtaacaaagacgttaaaaagattgga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37903367 |
cttcttctcactaatttataatcaatttagtttcattatcattgttgtttgacttgcagcctactcaagagtgtgtaacaaagacgttaaaaagattgga |
37903268 |
T |
|
| Q |
418 |
agagaagatgcaagggcgagtaagttttctcccaaattatcagcctactcaatccttgtactgttgcttacattattggttttgattattctatcaattc |
517 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37903267 |
agagaagatgcaagggcgagtaagttttctcccaaattatcagcctactcaatccttgtactgttgcttacattattggttttgattattctatcaattc |
37903168 |
T |
|
| Q |
518 |
ctcttttgcaggtactgaaacacatgttatatcttatgcgcactggggaaaaggatcttcaaatacgtgtagctcttgctcttgcacatttatgttcccc |
617 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37903167 |
ctcttttgcaggtactgaaacacatgttatatcttatgcgcactggggaaaaggatcttcaaatacgtgtagctcttgctcttgcacatttatgttcccc |
37903068 |
T |
|
| Q |
618 |
tgatgat |
624 |
Q |
| |
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||||||| |
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| T |
37903067 |
tgatgat |
37903061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 18 - 624
Target Start/End: Complemental strand, 37910178 - 37909572
Alignment:
| Q |
18 |
ataatgaggtgaagttagtttccttgttttttactcgttcagcatagtatgtggccctttattaatcattgatgcctggtgatatgctgcctctgacata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37910178 |
ataatgaggtgaagttagtttccttgttttttactcgttcagcatagtatgtggccctttattaatcattgatgcctggtgatatgctgcctctgacata |
37910079 |
T |
|
| Q |
118 |
actgctttgtatgacaggacaatgttgcggttataattaaggctggtggttttcaaaaactgcatgatggacatttcaacgctcaagtacgttcatttgc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37910078 |
actgctttgtatgacaggacaatgttgcggttataattaaggctggtggttttcaaaaactgcatgatggacatttcaacgctcaagtacgttcatttgc |
37909979 |
T |
|
| Q |
218 |
tctttgtagcacagtgctacaatatgttcacatttaattttctgtcatttcttctttggaatgataatttagttgtttgtttatcaaggtaatagaacct |
317 |
Q |
| |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37909978 |
tctttgcagcacagtactacaatatgttcacatttaattttctgtcatttcttctttggaatgataatttagttgtttgtttatcaaggtaatagaacct |
37909879 |
T |
|
| Q |
318 |
cttcttctcactaatttataatcaatttagtttcattatcattgttgtttgacttgcagccttctcaagagtgtgtaacaaagacgttaaaaagattgga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37909878 |
cttcttctcactaatttataatcaatttagtttcattatcattgttgtttgacttgcagcctactcaagagtgtgtaacaaagacgttaaaaagattgga |
37909779 |
T |
|
| Q |
418 |
agagaagatgcaagggcgagtaagttttctcccaaattatcagcctactcaatccttgtactgttgcttacattattggttttgattattctatcaattc |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37909778 |
agagaagatgcaagggcgagtaagttttctcccaaattatcagcctactcaatccttgtactgttgcttacattattggttttgattattctatcaattc |
37909679 |
T |
|
| Q |
518 |
ctcttttgcaggtactgaaacacatgttatatcttatgcgcactggggaaaaggatcttcaaatacgtgtagctcttgctcttgcacatttatgttcccc |
617 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37909678 |
ctcttttgcaggtactgaaacacatgttatatcttatgcgcactggggaaaaggatcttcaaatacgtgtagctcttgctcttgcacatttatgttcccc |
37909579 |
T |
|
| Q |
618 |
tgatgat |
624 |
Q |
| |
|
||||||| |
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|
| T |
37909578 |
tgatgat |
37909572 |
T |
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Back To:
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