View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18164_low_3 (Length: 524)
Name: NF18164_low_3
Description: NF18164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18164_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 248 - 506
Target Start/End: Original strand, 22595262 - 22595524
Alignment:
| Q |
248 |
agacgtatgtgcttggatacacatttgtaaaatcacggcaaataactatattaacgcagaaacaacaatcaatcacttcgcattttgacatcaaaagacc |
347 |
Q |
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| T |
22595262 |
agacgtatgtgcttggatacacgtttgcaaaatcacggcaaataactatattaactcagaaacaacaatcaatcacttcgcattttgacatcaaaagacc |
22595361 |
T |
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| Q |
348 |
ttagtcatgtggagtcgatgaaaataattcaaaccaaacatatatttggtgtataagtcatctcactttatactcaacgtctaatttttcatccatccgg |
447 |
Q |
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| T |
22595362 |
ttagtcatgtggaatcgatgaaaataattcaaaccgaacatatatttggtgtataagtcatctcactttatactcaaagtctaatttttcatccatccgg |
22595461 |
T |
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| Q |
448 |
tttaagagttctaactcacat----ttactatacctacactttttcactcatgtagctctctg |
506 |
Q |
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| T |
22595462 |
tttaagagttctaactcacatttacttactatacctacactttttcactcatgtagctctctg |
22595524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 21 - 250
Target Start/End: Original strand, 22594862 - 22595088
Alignment:
| Q |
21 |
agggcggacatgtgtttggaaatgcgggcgcgcaacaaaacatacaccaagataaattatcgtgtttggaggtaaatataatccttaaagttaaaatcaa |
120 |
Q |
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| T |
22594862 |
agggcggacatgtgtttggaaatgcgggcgcgcaacaaaacatacaccaagataaattatcgggtttggaggtaaatataatccttaaagttaaaatcaa |
22594961 |
T |
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| Q |
121 |
tttcaaaaaacaagaagnnnnnnnnntactaaaagcaactaaatatatgaaagtgaaatttatatttttaaaagcacttttataagttaatcagccataa |
220 |
Q |
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| T |
22594962 |
tttcaaaaaacaagaa--aaaaaaaatactaaaagcaactaaatatatgaaagtg-aatttatatttttaaaagcacttttataagtcaatcagccatga |
22595058 |
T |
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| Q |
221 |
agatttctttcataatgttttgcaacgaga |
250 |
Q |
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| T |
22595059 |
agatttctttcataatgttttgcaacgaga |
22595088 |
T |
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