View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18164_low_5 (Length: 475)
Name: NF18164_low_5
Description: NF18164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18164_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 204 - 445
Target Start/End: Complemental strand, 7123048 - 7122806
Alignment:
| Q |
204 |
tcaccaagcttaatttattattactgatcgattattctgaccgtttttaccacttggcttatggttcgattaacctaattatactaatcga-ttattcaa |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7123048 |
tcaccaagcttaatttattattactgatcgattattctgaccgtttttaccacttggcttatggttcgattaacctaattatactaatcgaattattcaa |
7122949 |
T |
|
| Q |
303 |
cacatgacataaacagaacttgcaaaaacattacataaataccattaattctttatagatcaatattatcatcgtattcacattaatgaatatgtacaaa |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7122948 |
cacatgacataaacagaacttgcaaaaacattacataaataccattaactctttatagatcaatattatcatcgtattcacattaatgaatatgtacaaa |
7122849 |
T |
|
| Q |
403 |
aaggataactcaaaaattctttggcttccgcgtaaagaaacac |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7122848 |
aaggataactcaaaaattctttggcttccgcgtaaagaaacac |
7122806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University