View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18164_low_6 (Length: 460)

Name: NF18164_low_6
Description: NF18164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18164_low_6
NF18164_low_6
[»] chr1 (2 HSPs)
chr1 (20-230)||(9956375-9956587)
chr1 (249-450)||(9959625-9959820)
[»] chr8 (3 HSPs)
chr8 (47-115)||(30863345-30863413)
chr8 (43-115)||(34215431-34215503)
chr8 (43-114)||(6762515-6762586)
[»] chr3 (3 HSPs)
chr3 (47-115)||(54711858-54711926)
chr3 (47-114)||(21667335-21667402)
chr3 (47-114)||(21682541-21682608)
[»] scaffold0150 (1 HSPs)
scaffold0150 (47-114)||(15122-15189)
[»] scaffold0018 (1 HSPs)
scaffold0018 (47-114)||(134294-134361)
[»] chr6 (1 HSPs)
chr6 (43-114)||(14658117-14658188)
[»] chr7 (1 HSPs)
chr7 (65-115)||(23036110-23036160)
[»] chr5 (2 HSPs)
chr5 (47-113)||(29287039-29287105)
chr5 (47-113)||(42946330-42946396)


Alignment Details
Target: chr1 (Bit Score: 178; Significance: 8e-96; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 9956375 - 9956587
Alignment:
Q  20 taaagcactatctaaagt--atgtgtttaatttatagtgctttcgggttaaaagcgctagtaaaggggcgccatattttcccaattttgcagtagtgtgt 117  Q
    |||||||| |||||||||  |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  9956375 taaagcaccatctaaagtctatgtgtttgatttatagcgctttcgggttaaaagcgctagtaaatgggcgccatattttcccaattttgcagtaatgtgt 9956474  T
Q  118 tcaataaaatcaatccattgataattgtttctttcaactgctctctattcgtcttgttacactcttctcccaatttctacttttgataatatacgtggta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9956475 tcaataaaatcaatccattgataattgtttctttcaactgctctctattcgtcttgttacactcttctcccaatttctacttttgataatatatgtggta 9956574  T
Q  218 atacttttccaag 230  Q
    |||||||||||||    
T  9956575 atacttttccaag 9956587  T

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Target: chr1; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 249 - 450
Target Start/End: Original strand, 9959625 - 9959820
Alignment:
Q  249 ttatgtctatagtaagttgttggaaatcagtagttttgaagcataccttatcatgtaaatacatgccattccccaccttaagtttcatttttattttgat 348  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  9959625 ttatgtctatagtaagttgttggaaatcactagttttgaagcataccttattatgtaaatacatgccattccccactttaagtttcatttttattttgat 9959724  T
Q  349 gaaagcaccaaaatataaaagacagcaccttaaatttcatttaataacaaagaaaaacaatcttattttcgatggcttagttctgtaataacgatgccta 448  Q
    |||||||| |      |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9959725 gaaagcacta------aaaagacaacaccttaagtttcatttaataacaaagaaaaacaatcttattttcgaaggcttagttctgtaataacgatgccta 9959818  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 30863413 - 30863345
Alignment:
Q  47 atttatagtgctttcgggttaaaagcgctagtaaaggggcgccatattttcccaattttgcagtagtgt 115  Q
    |||||||| |||||   ||||||||||||||||| || |||| ||||||||||||||||| ||||||||    
T  30863413 atttatagcgcttttatgttaaaagcgctagtaatggagcgctatattttcccaattttgtagtagtgt 30863345  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 34215431 - 34215503
Alignment:
Q  43 tttaatttatagtgctttcgggttaaaagcgctagtaaaggggcgccatattttcccaattttgcagtagtgt 115  Q
    |||||||||||| ||||| | ||||||||||||| | | | ||||| ||||||||||||||||| ||||||||    
T  34215431 tttaatttatagcgctttagtgttaaaagcgctatttatgaggcgctatattttcccaattttgtagtagtgt 34215503  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 6762586 - 6762515
Alignment:
Q  43 tttaatttatagtgctttcgggttaaaagcgctagtaaaggggcgccatattttcccaattttgcagtagtg 114  Q
    |||||||||||| ||||| | ||||||||||||| | | | ||||| ||||||||||||||||| |||||||    
T  6762586 tttaatttatagcgctttagtgttaaaagcgctatttatgaggcgctatattttcccaattttgtagtagtg 6762515  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 54711858 - 54711926
Alignment:
Q  47 atttatagtgctttcgggttaaaagcgctagtaaaggggcgccatattttcccaattttgcagtagtgt 115  Q
    |||||||| ||||| | |||| |||||||| |||||||||||||| ||||| | |||||| ||||||||    
T  54711858 atttatagcgctttagtgttataagcgctattaaaggggcgccattttttcaccattttgtagtagtgt 54711926  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 21667335 - 21667402
Alignment:
Q  47 atttatagtgctttcgggttaaaagcgctagtaaaggggcgccatattttcccaattttgcagtagtg 114  Q
    |||||||| ||||| | |||| |||||||| |||||||||||||| ||||| | |||||| |||||||    
T  21667335 atttatagcgctttagtgttataagcgctattaaaggggcgccattttttcaccattttgtagtagtg 21667402  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 21682541 - 21682608
Alignment:
Q  47 atttatagtgctttcgggttaaaagcgctagtaaaggggcgccatattttcccaattttgcagtagtg 114  Q
    |||||||| ||||| | |||| |||||||| |||||||||||||| ||||| | |||||| |||||||    
T  21682541 atttatagcgctttagtgttataagcgctattaaaggggcgccattttttcaccattttgtagtagtg 21682608  T

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Target: scaffold0150 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 15189 - 15122
Alignment:
Q  47 atttatagtgctttcgggttaaaagcgctagtaaaggggcgccatattttcccaattttgcagtagtg 114  Q
    |||||||| |||||   ||||||||||||| ||| || |||| ||||||||||||||||| |||||||    
T  15189 atttatagcgcttttatgttaaaagcgctattaatggagcgctatattttcccaattttgtagtagtg 15122  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 134294 - 134361
Alignment:
Q  47 atttatagtgctttcgggttaaaagcgctagtaaaggggcgccatattttcccaattttgcagtagtg 114  Q
    |||||||| ||||||  ||||||||||||| ||| || |||| ||||||||| ||||||| |||||||    
T  134294 atttatagcgctttcatgttaaaagcgctattaatggagcgctatattttcctaattttgtagtagtg 134361  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 14658117 - 14658188
Alignment:
Q  43 tttaatttatagtgctttcgggttaaaagcgctagtaaaggggcgccatattttcccaattttgcagtagtg 114  Q
    |||||||||||| ||||| | |||||||||||||   | | ||||| ||||||||||||||||| |||||||    
T  14658117 tttaatttatagcgctttagtgttaaaagcgctatatatgaggcgctatattttcccaattttgtagtagtg 14658188  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 23036110 - 23036160
Alignment:
Q  65 ttaaaagcgctagtaaaggggcgccatattttcccaattttgcagtagtgt 115  Q
    |||||||||||| ||| | ||||| ||||||||||||||||| ||||||||    
T  23036110 ttaaaagcgctattaatgaggcgctatattttcccaattttgtagtagtgt 23036160  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 29287039 - 29287105
Alignment:
Q  47 atttatagtgctttcgggttaaaagcgctagtaaaggggcgccatattttcccaattttgcagtagt 113  Q
    |||||||| ||||||  ||||||||||||| | ||||||||  |||||||| |||||||| ||||||    
T  29287039 atttatagcgctttcatgttaaaagcgctatttaaggggcgttatattttctcaattttgtagtagt 29287105  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 42946330 - 42946396
Alignment:
Q  47 atttatagtgctttcgggttaaaagcgctagtaaaggggcgccatattttcccaattttgcagtagt 113  Q
    |||||||| | ||| | |||||||||| || ||||| ||||| ||||||||||||||||| ||||||    
T  42946330 atttatagcgttttagtgttaaaagcgttattaaagtggcgctatattttcccaattttgtagtagt 42946396  T

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