View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18164_low_8 (Length: 376)
Name: NF18164_low_8
Description: NF18164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18164_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 6 - 291
Target Start/End: Complemental strand, 13879691 - 13879406
Alignment:
| Q |
6 |
caacaacaacaacaacgatgatgatgatcttgttctctgggattttacggagactgaggagtctgtgattttgcggtcgaatcttgtcgctgacaacgtg |
105 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13879691 |
caacaacaacaacgatgatgatgatgatcttgttctctgggattttacggagactgaggagtctgtgattttgcggtcgaatcttgtcgctgacaacgtg |
13879592 |
T |
|
| Q |
106 |
aggaaggaagagattgatgtctgtgttgatcacggtactctcaggattgaggatgttcttcccggtcgaaatctgttttcagtaacacttaacttgaaag |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13879591 |
aggaaggaagagattgatgtctgtgttgatcacggtactctcaggattgaggatgttcttcccggtcgaaatctgttttcagtaacacttaacttgaaag |
13879492 |
T |
|
| Q |
206 |
ggaagcactgcgactttgttaacactaaagccaaaatgatagagaacaatttcattgaagttgtggttcctaagctcaagaacaag |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13879491 |
ggaagcactgcgactttgttaacactaaagccaaaatgatagagaacaatttcattgaagttgtggttcctaagctcaagaacaag |
13879406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 13875461 - 13875189
Alignment:
| Q |
19 |
aacgatgatgatgatcttgttctctgggattttacggagactgaggagtctgtgattttgcggtcgaatcttgtcgctgacaacgtgaggaaggaagaga |
118 |
Q |
| |
|
|||||||| || ||||||||||||| |||||| |||||| ||||||||| ||||||| |||| |||||| ||||| ||||||||||||||||||||| |
|
|
| T |
13875461 |
aacgatgactattatcttgttctctgtgattttgaggagaccgaggagtctttgatttttcggttgaatctggtcgccaacaacgtgaggaaggaagaga |
13875362 |
T |
|
| Q |
119 |
ttgatgtctgtgttgatcacggtactctcaggattgaggatgttcttcccggtcgaaatctgttttcagtaacacttaacttgaaagggaagcactgcga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||| ||||||| ||||| |||||||||||||||| | ||| |
|
|
| T |
13875361 |
ttgatgtctgtgttgatcacggtactctcaggattaaggatgctcttccaggtcgaaatcgattttcaggtacactcgacttgaaagggaagcatttcga |
13875262 |
T |
|
| Q |
219 |
ctttgttaacactaaagccaaaatgatagagaacaatttcattgaagttgtggttcctaagctcaagaacaag |
291 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||| |||||| |
|
|
| T |
13875261 |
cgttgttaacactaaagccaaaatgatagagaacaatttccttgaaattgtggttcccaagctcaacaacaag |
13875189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University