View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18165_high_10 (Length: 202)
Name: NF18165_high_10
Description: NF18165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18165_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 52272859 - 52273029
Alignment:
| Q |
16 |
cataggagaaggaatactttcacggctcgaatgatctgcagcatcggtggaaccatcaatatgcagtgtgcttaaatcattctctgcagggcgtgtagct |
115 |
Q |
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| T |
52272859 |
cataggagaaggaatactttcacggctcgaatgatctgcagcatcggtggaaccatcaatatgcagtgtgcttaaatcattctctgcagggcgtgtagct |
52272958 |
T |
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| Q |
116 |
ggtgtttcttcggattcagcattttcaatcttattagttatctcttcactggggcgaggctcagaatcaat |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
52272959 |
ggtgtttcttcggattcagcattttcaatcttattagttatctcttcactagggcgaggatcagaatcaat |
52273029 |
T |
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