View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18165_high_7 (Length: 246)

Name: NF18165_high_7
Description: NF18165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18165_high_7
NF18165_high_7
[»] chr3 (19 HSPs)
chr3 (1-237)||(1677207-1677443)
chr3 (1-232)||(55196805-55197026)
chr3 (1-237)||(26538559-26538797)
chr3 (113-221)||(13645188-13645296)
chr3 (159-237)||(13645077-13645155)
chr3 (21-95)||(5385974-5386048)
chr3 (32-91)||(55197939-55197998)
chr3 (32-95)||(5386830-5386893)
chr3 (138-221)||(27662344-27662427)
chr3 (45-95)||(25529529-25529579)
chr3 (33-99)||(27320295-27320361)
chr3 (33-99)||(27362060-27362126)
chr3 (32-88)||(1678357-1678413)
chr3 (111-213)||(27661378-27661480)
chr3 (18-80)||(34594635-34594697)
chr3 (6-99)||(27319806-27319899)
chr3 (19-79)||(16196470-16196530)
chr3 (33-99)||(27361536-27361602)
chr3 (189-237)||(27329079-27329127)
[»] chr2 (11 HSPs)
chr2 (1-233)||(5695968-5696200)
chr2 (1-237)||(31559125-31559361)
chr2 (140-219)||(30545994-30546072)
chr2 (34-91)||(5694996-5695053)
chr2 (85-154)||(28165969-28166036)
chr2 (156-237)||(30547789-30547870)
chr2 (85-154)||(44904842-44904910)
chr2 (6-79)||(42827731-42827804)
chr2 (188-236)||(6842930-6842979)
chr2 (188-236)||(9661062-9661111)
chr2 (188-236)||(9661996-9662045)
[»] chr4 (7 HSPs)
chr4 (6-233)||(20946089-20946316)
chr4 (12-237)||(2671766-2671995)
chr4 (32-91)||(2672611-2672670)
chr4 (32-79)||(20947236-20947283)
chr4 (18-85)||(28427267-28427334)
chr4 (120-237)||(11148576-11148693)
chr4 (85-154)||(11154474-11154542)
[»] chr8 (6 HSPs)
chr8 (1-237)||(7274250-7274486)
chr8 (33-122)||(27410135-27410223)
chr8 (33-99)||(37964244-37964310)
chr8 (32-89)||(7273280-7273337)
chr8 (23-122)||(27410850-27410948)
chr8 (6-99)||(37963668-37963761)
[»] chr1 (6 HSPs)
chr1 (1-237)||(43882278-43882509)
chr1 (93-154)||(13228959-13229019)
chr1 (85-150)||(40767938-40768002)
chr1 (35-79)||(9419422-9419466)
chr1 (135-237)||(9419522-9419624)
chr1 (45-95)||(11430959-11431009)
[»] chr7 (8 HSPs)
chr7 (12-237)||(5975265-5975489)
chr7 (72-222)||(5974393-5974530)
chr7 (85-154)||(38756974-38757042)
chr7 (120-237)||(38758032-38758150)
chr7 (6-79)||(41385379-41385452)
chr7 (23-96)||(44815641-44815714)
chr7 (168-237)||(19639734-19639802)
chr7 (45-95)||(37549238-37549288)
[»] chr6 (3 HSPs)
chr6 (1-79)||(1134478-1134556)
chr6 (138-237)||(1134373-1134472)
chr6 (6-95)||(19597549-19597638)
[»] chr5 (3 HSPs)
chr5 (164-237)||(33489659-33489732)
chr5 (45-91)||(41282674-41282720)
chr5 (47-95)||(41284083-41284131)


Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 1677443 - 1677207
Alignment:
Q  1 catcatcataatttttctgcaaccacatattggcaactcatttgatgatgattgacaaatggaatgagaagacattgttcaatgaaatgggtttttggtg 100  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1677443 catcctcataatttttctgcaaccacgtattggcaactcatttgatgataattgacaaatggaatgagaagacattgttcaatgaaatgagtttttggtg 1677344  T
Q  101 ttagggcgcaaagctatgggagggtgggaatggcagaaatgaagaagagagaaagatcatagtgaggaagaaggtggaaataatatgttttaaaattcaa 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1677343 ttagagcgcaaagctatgggagggtgggaatggcagaaatgaagaagagagaaagaacatagtgaggaagaaggtggaaataatatgttttaaaattcaa 1677244  T
Q  201 attttgatgattatgttttttattttcgtccctatgt 237  Q
    ||||||||||||| |||||||||||||||||||||||    
T  1677243 attttgatgattacgttttttattttcgtccctatgt 1677207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 55197026 - 55196805
Alignment:
Q  1 catcatcataatttttctgcaaccacatattggcaactcatttgatgatgattgacaaatggaatgagaagacattgttcaatgaaatgggtttttggtg 100  Q
    |||| ||||||||||||||||||||||||||||||| |||          ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55197026 catcctcataatttttctgcaaccacatattggcaa-tcaa---------attgacaaatggaatgagaagacattgttcaatgaaatgggtttttggtg 55196937  T
Q  101 ttagggcgcaaagctatgggagggtgggaatggcagaaatgaagaagagagaaagatcatagtgaggaagaaggtggaaataatatgttttaaaattcaa 200  Q
    ||||||| ||||||||||| ||||||||||||||| ||||||||||||||| || | |||||||||||| ||||||||||||||||||||||||||||||    
T  55196936 ttagggcacaaagctatggaagggtgggaatggcataaatgaagaagagaggaataacatagtgaggaataaggtggaaataatatgttttaaaattcaa 55196837  T
Q  201 attttgatgattatgttttttattttcgtccc 232  Q
    |||||||||||||| |||||||||||||||||    
T  55196836 attttgatgattatattttttattttcgtccc 55196805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 26538559 - 26538797
Alignment:
Q  1 catcatcataatttttctgcaaccacatattggcaactcatttgatgatgattgacaaatggaatgagaagacattgttcaatgaaatgggttttt-ggt 99  Q
    |||| ||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||| |||||||| |||||||| || |||||| |||||| |||    
T  26538559 catcctcataattttt-tgcaaccacatattgacaaatcatttgatgatgattgacaaatgaaatgagaacacattgttgaaggaaatgagttttttggt 26538657  T
Q  100 gttagggcgcaaagctatgggagggtggga--atggcagaaatgaagaagagagaaagatcatagtgaggaagaaggtggaaataatatgttttaaaatt 197  Q
    |||||||||||| |||| | ||| |||||   |||| ||||||||||||||| |||||| || |||||||||||||||||||| |||| |||||||| ||    
T  26538658 gttagggcgcaa-gctacgagagagtgggcgcatggtagaaatgaagaagagggaaagaacagagtgaggaagaaggtggaaaaaataggttttaaattt 26538756  T
Q  198 caaattttgatgattatg-ttttttattttcgtccctatgt 237  Q
    |||||||| ||||||| | ||||||| ||||||||||||||    
T  26538757 caaatttttatgattaagtttttttaatttcgtccctatgt 26538797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 113 - 221
Target Start/End: Original strand, 13645188 - 13645296
Alignment:
Q  113 gctatgggagggtgggaatggcagaaatgaagaagagagaaagatcatagtgaggaagaaggtggaaataatatgttttaaaattcaaattttgatgatt 212  Q
    |||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  13645188 gctatgggagagtgggaatgacagaaatgaagaagagagaaagaacatagtgaggaagaaggtggaaagaatatgttttaaatttcaaattttgatgatt 13645287  T
Q  213 atgtttttt 221  Q
    |||||||||    
T  13645288 atgtttttt 13645296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 13645155 - 13645077
Alignment:
Q  159 atagtgaggaagaaggtggaaataatatgttttaaaattcaaattttgatgattatgttttttattttcgtccctatgt 237  Q
    |||||||||||||||||||||| ||||  ||||| | ||||||||||||| ||||||||||||||||||||||||||||    
T  13645155 atagtgaggaagaaggtggaaagaatacattttacatttcaaattttgattattatgttttttattttcgtccctatgt 13645077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 5386048 - 5385974
Alignment:
Q  21 aaccacatattggcaactcatttgatgatgattgacaaatggaatgagaagacattgttcaatgaaatgggtttt 95  Q
    ||||||| || ||||||||||| |||||||||||| ||||| ||||||||||||||||| ||||||||| |||||    
T  5386048 aaccacaaataggcaactcattagatgatgattgataaatgaaatgagaagacattgttgaatgaaatgagtttt 5385974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 55197939 - 55197998
Alignment:
Q  32 ggcaactcatttgatgatgattgacaaatggaatgagaagacattgttcaatgaaatggg 91  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||| || ||||||||    
T  55197939 ggcaactcatttgatgatgaatgagaaatggaatgagaagacattgttgaaggaaatggg 55197998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 5386830 - 5386893
Alignment:
Q  32 ggcaactcatttgatgatgattgacaaatggaatgagaagacattgttcaatgaaatgggtttt 95  Q
    ||||||||||| |||||||||||| |||| ||||||||||||||| || ||||||||| |||||    
T  5386830 ggcaactcattagatgatgattgataaatagaatgagaagacattattgaatgaaatgagtttt 5386893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 221
Target Start/End: Original strand, 27662344 - 27662427
Alignment:
Q  138 aatgaagaagagagaaagatcatagtgaggaagaaggtggaaataatatgttttaaaattcaaattttgatgattatgtttttt 221  Q
    |||||||| |||||||||| || || ||||||||||||||||||||    ||||||| |||||| |||||| ||||||||||||    
T  27662344 aatgaagatgagagaaagaacagagagaggaagaaggtggaaataaaggattttaaatttcaaaatttgataattatgtttttt 27662427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 25529529 - 25529579
Alignment:
Q  45 atgatgattgacaaatggaatgagaagacattgttcaatgaaatgggtttt 95  Q
    ||||||||||| ||||||||||||||||||||||| || ||||||||||||    
T  25529529 atgatgattgagaaatggaatgagaagacattgttgaaggaaatgggtttt 25529579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 27320295 - 27320361
Alignment:
Q  33 gcaactcatttgatgatgattgacaaatggaatgagaagacattgttcaatgaaatgggtttttggt 99  Q
    ||||||||||||||||||||||| ||||||||||| |||| |||||| || ||||||  ||||||||    
T  27320295 gcaactcatttgatgatgattgagaaatggaatgataagatattgttgaaggaaatgattttttggt 27320361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 27362060 - 27362126
Alignment:
Q  33 gcaactcatttgatgatgattgacaaatggaatgagaagacattgttcaatgaaatgggtttttggt 99  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||||||| || ||||||  ||||||||    
T  27362060 gcaactcatttgatgatgattgagaaatgaaatgataagacattgttgaaggaaatgattttttggt 27362126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 1678357 - 1678413
Alignment:
Q  32 ggcaactcatttgatgatgattgacaaatggaatgagaagacattgttcaatgaaat 88  Q
    |||||||||||| ||||||| ||| ||||||||||||||||||||||| || |||||    
T  1678357 ggcaactcattttatgatgaatgagaaatggaatgagaagacattgttgaaggaaat 1678413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 27661480 - 27661378
Alignment:
Q  111 aagctatgggagggtgggaatggcagaaatgaagaagagagaaagatcatagtgaggaagaaggtggaaataatatgttttaaaattcaaattttgatga 210  Q
    |||||||| |||| |||| | || || ||||||||||||||||||| || || || |||||||||||||||  |  |||||||| |||||| ||| ||||    
T  27661480 aagctatgagaggctgggtagggaaggaatgaagaagagagaaagaacagagagacgaagaaggtggaaattttgagttttaaatttcaaaattttatga 27661381  T
Q  211 tta 213  Q
    |||    
T  27661380 tta 27661378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 34594697 - 34594635
Alignment:
Q  18 tgcaaccacatattggcaactcatttgatgatgattgacaaatggaatgagaagacattgttc 80  Q
    |||||| | |||| ||||||||| ||||||||| |||| ||||| ||||||||||||||||||    
T  34594697 tgcaactatatataggcaactcaattgatgatggttgagaaatgaaatgagaagacattgttc 34594635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 27319899 - 27319806
Alignment:
Q  6 tcataatttttctgcaaccacatattggcaactcatttgatgatgattgacaaatggaatgagaagacattgttcaatgaaatgggtttttggt 99  Q
    ||||||||||| | ||  |||||||  ||||||||||||||||||| | | ||||| ||| |||||||||| |  || ||||||||||||||||    
T  27319899 tcataatttttttccattcacatataagcaactcatttgatgatgactcagaaatgaaatcagaagacattatggaaggaaatgggtttttggt 27319806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 16196530 - 16196470
Alignment:
Q  19 gcaaccacatattggcaactcatttgatgatgattgacaaatggaatgagaagacattgtt 79  Q
    |||||||||||| ||||| |||| ||||||||||||| |  |||||| |||||||||||||    
T  16196530 gcaaccacatataggcaagtcatatgatgatgattgagaggtggaataagaagacattgtt 16196470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 27361602 - 27361536
Alignment:
Q  33 gcaactcatttgatgatgattgacaaatggaatgagaagacattgttcaatgaaatgggtttttggt 99  Q
    ||||||||||||||||||| ||| ||||| ||| ||| |||||| |  || ||||||||||||||||    
T  27361602 gcaactcatttgatgatgactgagaaatgaaatcagacgacattatggaaggaaatgggtttttggt 27361536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 27329127 - 27329079
Alignment:
Q  189 tttaaaattcaaattttgatgattatgttttttattttcgtccctatgt 237  Q
    ||||||||||||| ||||||| ||| |||||||| |||| |||||||||    
T  27329127 tttaaaattcaaaatttgatgtttaggttttttaatttcatccctatgt 27329079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 5695968 - 5696200
Alignment:
Q  1 catcatcataatttttctgcaaccacatattggcaactcatttgatgatgattgacaaatggaatgagaagacattgttcaatgaaatgggtttttggtg 100  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5695968 catcctcataattgttctgcaaccacatattggcaactcatttgatgatgattgacaaatggaatgagaatacattgttcaatgaaatgggtttttggtg 5696067  T
Q  101 ttagggcgcaaagctatgggagggtgggaatggcagaaatgaagaagagagaaagatcatagtgaggaagaaggtggaaataatatgttttaaaattcaa 200  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  5696068 ttagggcgcaaagctatggaagggtgggaatggcagaaatgaagaagagagaaataacatagtgaggaagaaggtggaaataatatgttttaaaattcaa 5696167  T
Q  201 attttgatgattatgttttttattttcgtccct 233  Q
    |||||||||||||||||||||||||||||||||    
T  5696168 attttgatgattatgttttttattttcgtccct 5696200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 31559125 - 31559361
Alignment:
Q  1 catcatcataatttttctgcaaccacatattggcaactcatttgatgatgattgacaaatggaatgagaagacattg-ttcaatgaaatgggtttttggt 99  Q
    |||| |||| |||||  ||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||| || || | | |||||||||  |    
T  31559125 catcctcattattttgttgcaaccacatataggcaactcaattgatgatgattgagaaatggaatgagaagacattgtttgaagggagtgggtttttcct 31559224  T
Q  100 gttagggcgcaaagctatgggagggtgggaatggcagaaatgaagaagagagaaagatcatagtgaggaagaaggtggaaataatatgttttaaaattca 199  Q
     ||||||||| ||| ||||   |  | || | || ||| |||||||||| ||||||| || |  || |||||||||||||||| |   ||||||| ||||    
T  31559225 tttagggcgc-aaggtatgaaggattcggcaaggaagatatgaagaagaaagaaagaacagaaagatgaagaaggtggaaatattgatttttaaatttca 31559323  T
Q  200 aattttgatgattatgttttttattttcgtccctatgt 237  Q
    || || |||||||| || ||||| |||| |||||||||    
T  31559324 aaattcgatgattacgtgttttaatttcatccctatgt 31559361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 30546072 - 30545994
Alignment:
Q  140 tgaagaagagagaaagatcatagtgaggaagaaggtggaaataatatgttttaaaattcaaattttgatgattatgtttt 219  Q
    ||||||||||||||| | || ||||||||||||||||||||||||  |||||||| |||||| |||||||||||||||||    
T  30546072 tgaagaagagagaaataacagagtgaggaagaaggtggaaataat-ggttttaaatttcaaaatttgatgattatgtttt 30545994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 5695053 - 5694996
Alignment:
Q  34 caactcatttgatgatgattgacaaatggaatgagaagacattgttcaatgaaatggg 91  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||| || ||||||||    
T  5695053 caactcatttgatgatgaatgagaaatggaatgagaagacattgttgaaggaaatggg 5694996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 28166036 - 28165969
Alignment:
Q  85 aaatgggtttttggtgttagggcgcaaagctatgggagggtgggaatggcagaaatgaagaagagagaaa 154  Q
    ||||| ||||||| ||||||||||||| ||||||||||| |||| |||| ||||||||||||||||||||    
T  28166036 aaatgagtttttgctgttagggcgcaa-gctatgggaggctgggcatgg-agaaatgaagaagagagaaa 28165969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 237
Target Start/End: Original strand, 30547789 - 30547870
Alignment:
Q  156 atcatagtgaggaagaaggtggaaataatatgttttaaaattcaaattttgatgattatgttttttattttcgtccctatgt 237  Q
    |||| ||||||||| || ||||||| |||  |||||||| || ||| |||||||||||||||||||| |||||||| |||||    
T  30547789 atcagagtgaggaaaaatgtggaaagaatgagttttaaattttaaaatttgatgattatgttttttaatttcgtccttatgt 30547870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 44904910 - 44904842
Alignment:
Q  85 aaatgggtttttggtgttagggcgcaaagctatgggagggtgggaatggcagaaatgaagaagagagaaa 154  Q
    ||||| ||||||| ||||||||||||| ||| ||||||| |||| |||| ||||||||||||||||||||    
T  44904910 aaatgagtttttgctgttagggcgcaa-gctgtgggaggctgggcatggaagaaatgaagaagagagaaa 44904842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 42827804 - 42827731
Alignment:
Q  6 tcataatttttctgcaaccacatattggcaactcatttgatgatgattgacaaatggaatgagaagacattgtt 79  Q
    ||||||||||  ||||||| || || || |||||||| ||||||||||||  |||||||| |||||||||||||    
T  42827804 tcataattttgttgcaaccgcacataggtaactcattggatgatgattgagtaatggaattagaagacattgtt 42827731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 6842979 - 6842930
Alignment:
Q  188 ttttaaaattcaaattttgatgattatgtttttt-attttcgtccctatg 236  Q
    ||||||| |||||||||||||| ||| ||||||| |||||||||||||||    
T  6842979 ttttaaatttcaaattttgatgtttaagttttttcattttcgtccctatg 6842930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 9661111 - 9661062
Alignment:
Q  188 ttttaaaattcaaattttgatgattatgtttttt-attttcgtccctatg 236  Q
    ||||||| || ||||||||||||||| ||||||| |||||||||||||||    
T  9661111 ttttaaattttaaattttgatgattacgttttttcattttcgtccctatg 9661062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 9661996 - 9662045
Alignment:
Q  188 ttttaaaattcaaattttgatgattatgtttttt-attttcgtccctatg 236  Q
    ||||||| |||||||||||||| ||| ||||||| |||||||||||||||    
T  9661996 ttttaaatttcaaattttgatgtttaagttttttcattttcgtccctatg 9662045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 6 - 233
Target Start/End: Complemental strand, 20946316 - 20946089
Alignment:
Q  6 tcataatttttctgcaaccacatattggcaactcatttgatgatgattgacaaatggaatgagaagacattgttcaatgaaatgggtttttggtgttagg 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||    
T  20946316 tcataatttttctgcaaccacatattggcaactcatttgatgatgattgacaaatgaaatgagaagacatggttcaatgaaatgagtttttggtgttagg 20946217  T
Q  106 gcgcaaagctatgggagggtgggaatggcagaaatgaagaagagagaaagatcatagtgaggaagaaggtggaaataatatgttttaaaattcaaatttt 205  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20946216 gcgcaaagttatggaagggtgggaatggcagaaatgaagaagagagaaataacatagtgaggaagaaggtggaaataatatgttttaaaattcaaatttt 20946117  T
Q  206 gatgattatgttttttattttcgtccct 233  Q
    ||||||||| ||||||||||||||||||    
T  20946116 gatgattatattttttattttcgtccct 20946089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 237
Target Start/End: Complemental strand, 2671995 - 2671766
Alignment:
Q  12 tttttctgcaaccacatattggcaactcatttgatgatgattgacaaatggaatgagaagacattgttcaatgaaatgggtttttggtgttagggcgcaa 111  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2671995 tttttctgcaaccacgtattggcaactcatttgatgatgattgacaaatggaatgagaagacattgttcaatgaaatgggtttttggtgttagcgcgcaa 2671896  T
Q  112 agctatgggagggtgggaatg----gcagaaatgaagaagagagaaagatcatagtgaggaagaaggtggaaataatatgttttaaaattcaaattttga 207  Q
    |||||||| ||||||||||||    |||||||||||||||||||||  | ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2671895 agctatggaagggtgggaatggcaggcagaaatgaagaagagagaagtaacatagtgaggaagaaggtgaaaataatatgttttaaaattcaaattttga 2671796  T
Q  208 tgattatgttttttattttcgtccctatgt 237  Q
    ||||||||||||||||||||||||||||||    
T  2671795 tgattatgttttttattttcgtccctatgt 2671766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 2672611 - 2672670
Alignment:
Q  32 ggcaactcatttgatgatgattgacaaatggaatgagaagacattgttcaatgaaatggg 91  Q
    |||| ||||||||||||||| ||| ||||||||||||||||||||||| || ||||||||    
T  2672611 ggcagctcatttgatgatgaatgagaaatggaatgagaagacattgttgaaggaaatggg 2672670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 20947236 - 20947283
Alignment:
Q  32 ggcaactcatttgatgatgattgacaaatggaatgagaagacattgtt 79  Q
    |||||||||||||||||||| ||| ||||| |||||||||||||||||    
T  20947236 ggcaactcatttgatgatgaatgagaaatgaaatgagaagacattgtt 20947283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 28427334 - 28427267
Alignment:
Q  18 tgcaaccacatattggcaactcatttgatgatgattgacaaatggaatgagaagacattgttcaatga 85  Q
    |||||||||| |  |||||||||||  ||||||||||| ||||||||||| |||||||| || |||||    
T  28427334 tgcaaccacaaaaaggcaactcattacatgatgattgataaatggaatgacaagacattattgaatga 28427267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 237
Target Start/End: Complemental strand, 11148693 - 11148576
Alignment:
Q  120 gagggtgggaatggcagaaatgaagaagagagaaagatcatagtgaggaagaaggtggaaataatatgttttaaaattcaaattttgatgattatg-ttt 218  Q
    ||||||||  |||| || ||||||||||||||| ||| |  ||  ||||| ||||||||||||||    |||||| | |||| ||||||||||||| |||    
T  11148693 gagggtggacatggaaggaatgaagaagagagatagaactgagcaaggaaaaaggtggaaataat-gaatttaaattccaaaatttgatgattatgtttt 11148595  T
Q  219 tttattttcgtccctatgt 237  Q
    |||| ||||||||||||||    
T  11148594 tttaatttcgtccctatgt 11148576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 11154474 - 11154542
Alignment:
Q  85 aaatgggtttttggtgttagggcgcaaagctatgggagggtgggaatggcagaaatgaagaagagagaaa 154  Q
    ||||| ||||||| ||||||||||||| ||||||||||  |||| | || |||||||||||||| |||||    
T  11154474 aaatgagtttttgctgttagggcgcaa-gctatgggagactgggcacggaagaaatgaagaagatagaaa 11154542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 7274250 - 7274486
Alignment:
Q  1 catcatcataatttttctgcaaccacatattggcaactcatttgatgatgattgacaaatggaatgagaagacattgttcaatgaaatgggtttttggtg 100  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||    
T  7274250 catcctcataatttttctacaaccacatattgacaactcatttgatgatgattgacaaatggaatgagaatacattgttccatgaaatgagtttttggtg 7274349  T
Q  101 ttagggcgcaaagctatgggagggtgggaatggcagaaatgaagaagagagaaagatcatagtgaggaagaaggtggaaataatatgttttaaaattcaa 200  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||    
T  7274350 ttagggcgcaaagctatcgaagggtgggaatggcagaaatgaagaagagagaaataacatagtgaggaagaaggtggaaataataagttttaaaattcaa 7274449  T
Q  201 attttgatgattatgttttttattttcgtccctatgt 237  Q
    ||||||||||||||||||||||||||| |||||||||    
T  7274450 attttgatgattatgttttttattttcatccctatgt 7274486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 122
Target Start/End: Complemental strand, 27410223 - 27410135
Alignment:
Q  33 gcaactcatttgatgatgattgacaaatggaatgagaagacattgttcaatgaaatgggtttttggtgttagggcgcaaagctatgggag 122  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||  ||||||||   ||||||| ||||||||||||    
T  27410223 gcaactcatttgatgatgattgagaaatggaatgataagacattgttgaaggaaatgattttttggttcaagggcgc-aagctatgggag 27410135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 37964244 - 37964310
Alignment:
Q  33 gcaactcatttgatgatgattgacaaatggaatgagaagacattgttcaatgaaatgggtttttggt 99  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||  ||||||||    
T  37964244 gcaactcatttgatgatgattgagaaatggaatgataagacattgttgaaggaaatgattttttggt 37964310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 7273337 - 7273280
Alignment:
Q  32 ggcaactcatttgatgatgattgacaaatggaatgagaagacattgttcaatgaaatg 89  Q
    |||||||||||||||||||| ||| ||||||||||||||||||| ||| || ||||||    
T  7273337 ggcaactcatttgatgatgaatgagaaatggaatgagaagacatcgttgaaggaaatg 7273280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 122
Target Start/End: Original strand, 27410850 - 27410948
Alignment:
Q  23 ccacatattggcaactcatttgatgatgattgacaaatggaatgagaagacattgttcaatgaaatgggtttttggtgttagggcgcaaagctatgggag 122  Q
    ||||||||  ||||||||||||||||||| ||| ||||| ||| | |||||||| || ||  |||||||||||||||   |||||||||| |||||||||    
T  27410850 ccacatataagcaactcatttgatgatgactgagaaatgaaatcataagacattattgaagaaaatgggtttttggttcaagggcgcaaa-ctatgggag 27410948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 37963761 - 37963668
Alignment:
Q  6 tcataatttttctgcaaccacatattggcaactcatttgatgatgattgacaaatggaatgagaagacattgttcaatgaaatgggtttttggt 99  Q
    ||||||||||| | || ||||||||  ||||||||||||||||||| ||| ||||| ||| | |||||||| || || |||||| |||| ||||    
T  37963761 tcataattttttttcatccacatataagcaactcatttgatgatgactgagaaatgaaatcataagacattattgaaggaaatgagtttctggt 37963668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 43882509 - 43882278
Alignment:
Q  1 catcatcataatttttctgcaaccacatattggcaactcatttgatgatgattgacaaatggaatgagaagacattgttcaatgaaatgggtttttggtg 100  Q
    |||| ||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  43882509 catcctcataatttttctgcaaccacatattggcaactcatc-----atgattgacaaatggaatgagaatacattgttcaataaaatgggtttttggtg 43882415  T
Q  101 ttagggcgcaaagctatgggagggtgggaatggcagaaatgaagaagagagaaagatcatagtgaggaagaaggtggaaataatatgttttaaaattcaa 200  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  43882414 ttagggcgcaaagctatggaagggtgggaatggcataaatgaagaagagagaaataacatagtgaggaagaaggtggaaataatatgttttaaaattcaa 43882315  T
Q  201 attttgatgattatgttttttattttcgtccctatgt 237  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  43882314 attttgatgattatgttttttatttccgtctctatgt 43882278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 13228959 - 13229019
Alignment:
Q  93 ttttggtgttagggcgcaaagctatgggagggtgggaatggcagaaatgaagaagagagaaa 154  Q
    ||||| ||||||||||||| ||||||||||| |||| |||| ||||||||||||||||||||    
T  13228959 ttttgctgttagggcgcaa-gctatgggaggctgggcatggaagaaatgaagaagagagaaa 13229019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 40768002 - 40767938
Alignment:
Q  85 aaatgggtttttggtgttagggcgcaaagctatgggagggtgggaatggcagaaatgaagaagaga 150  Q
    ||||| ||||||| ||||||||||||| ||||||||||| |||| |||| ||||||||||||||||    
T  40768002 aaatgagtttttgctgttagggcgcaa-gctatgggaggctgggcatggaagaaatgaagaagaga 40767938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 9419422 - 9419466
Alignment:
Q  35 aactcatttgatgatgattgacaaatggaatgagaagacattgtt 79  Q
    |||||| |||||||||||||| |||||||||||||||||||||||    
T  9419422 aactcaattgatgatgattgagaaatggaatgagaagacattgtt 9419466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 9419522 - 9419624
Alignment:
Q  135 agaaatgaagaagagagaaagatcatagtgaggaagaaggtggaaataatatgttttaaaattcaaattttgatgattatgttttttattttcgtcccta 234  Q
    ||| |||||||||| ||||| | |  || || |||||||||||||| | |   ||||||| |||||| ||||||||||| |||||||| |||| ||||||    
T  9419522 agatatgaagaagaaagaaataacggagagatgaagaaggtggaaagattggtttttaaatttcaaaatttgatgattacgttttttaatttcatcccta 9419621  T
Q  235 tgt 237  Q
    |||    
T  9419622 tgt 9419624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 11430959 - 11431009
Alignment:
Q  45 atgatgattgacaaatggaatgagaagacattgttcaatgaaatgggtttt 95  Q
    ||||||||||| ||||||||||||||||||| ||| || |||| |||||||    
T  11430959 atgatgattgagaaatggaatgagaagacatggttgaaggaaaagggtttt 11431009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 5975265 - 5975489
Alignment:
Q  12 tttttctgcaaccacatattggcaactcatttgatgatgattgacaaatggaatgagaagacattgttcaatgaaatgggtttttggtgttagggcgcaa 111  Q
    ||||| ||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||| ||  |||||| ||||||||||||||||||||    
T  5975265 tttttttgcaaccacatattaacaactcatttgatgatgattgacaaatggactgagaagacattgttgaagaaaatggatttttggtgttagggcgcaa 5975364  T
Q  112 agctatgggagggtgggaatggcagaaatgaagaagagagaaagatcatagtgaggaagaaggtggaaataatatgttttaaaattcaaattttgatgat 211  Q
     |||||| ||||||||| ||||||||||| ||||||||||||||| |||| ||||||| |||||||||| ||||||||||||| || |||||||||||||    
T  5975365 -gctatgagagggtgggcatggcagaaataaagaagagagaaagaacataatgaggaacaaggtggaaagaatatgttttaaattttaaattttgatgat 5975463  T
Q  212 tatgttttttattttcgtccctatgt 237  Q
    ||||||||||| ||||||||||||||    
T  5975464 tatgttttttaatttcgtccctatgt 5975489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 222
Target Start/End: Complemental strand, 5974530 - 5974393
Alignment:
Q  72 acattgttcaatgaaatgggtttttggtgttagggcgcaaagctatgggagggtgggaatggcagaaatgaagaagagagaaagatcatagtgaggaaga 171  Q
    |||||||| || |||||| |||||| |||||| ||||||| |||||| || |||||| ||| ||||||||||||||||||  ||| ||||||||||||||    
T  5974530 acattgttgaaggaaatgagtttttagtgttacggcgcaa-gctatgagacggtgggcatgacagaaatgaagaagagag--agaacatagtgaggaaga 5974434  T
Q  172 aggtggaaataatatgttttaaaattcaaattttgatgattatgtttttta 222  Q
    | |||          |||||||| |||||| ||||||||||||||||||||    
T  5974433 aagtg----------gttttaaatttcaaactttgatgattatgtttttta 5974393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 38757042 - 38756974
Alignment:
Q  85 aaatgggtttttggtgttagggcgcaaagctatgggagggtgggaatggcagaaatgaagaagagagaaa 154  Q
    ||||| ||||||| ||||||||||||| ||||||||||| |||| |||| ||||||||||||||||||||    
T  38757042 aaatgagtttttgctgttagggcgcaa-gctatgggaggctgggcatggaagaaatgaagaagagagaaa 38756974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 237
Target Start/End: Original strand, 38758032 - 38758150
Alignment:
Q  120 gagggtgggaatggcagaaatgaagaagagagaaagatcatagtgaggaagaaggtggaaataatatgttttaaaattcaaattttgatgattatg-ttt 218  Q
    ||||||||  |||| || ||||||||||||||| ||| |  ||  |||||||||||||||| |||   ||||||| | |||| ||||||||||||| |||    
T  38758032 gagggtggacatggaaggaatgaagaagagagatagaactgagcaaggaagaaggtggaaagaatgaattttaaattccaaaatttgatgattatgtttt 38758131  T
Q  219 tttattttcgtccctatgt 237  Q
    |||| ||||||||||||||    
T  38758132 tttaatttcgtccctatgt 38758150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 41385379 - 41385452
Alignment:
Q  6 tcataatttttctgcaaccacatattggcaactcatttgatgatgattgacaaatggaatgagaagacattgtt 79  Q
    ||||||||||  |||||||||| || || |||||||| ||||||||||||  |||||||| |||||||||||||    
T  41385379 tcataattttgttgcaaccacacataggtaactcattggatgatgattgagtaatggaattagaagacattgtt 41385452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 44815641 - 44815714
Alignment:
Q  23 ccacatattggcaactcatttgatgatgattgacaaatggaatgagaagacattgttcaatgaaatgggttttt 96  Q
    |||||||| ||||| ||||||||||| |||||| | ||||||||||||||||||||| || ||| ||| |||||    
T  44815641 ccacatataggcaagtcatttgatgacgattgagagatggaatgagaagacattgttgaaggaattggtttttt 44815714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 19639734 - 19639802
Alignment:
Q  168 aagaaggtggaaataatatgttttaaaattcaaattttgatgattatgttttttattttcgtccctatgt 237  Q
    ||||||||||||| |||  |||||||| |||||| ||||||||||| |||||||| |||| |||||||||    
T  19639734 aagaaggtggaaa-aatgagttttaaatttcaaaatttgatgattacgttttttaatttcatccctatgt 19639802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 37549288 - 37549238
Alignment:
Q  45 atgatgattgacaaatggaatgagaagacattgttcaatgaaatgggtttt 95  Q
    ||||||||||| ||||||||||||||||||| ||| || |||| |||||||    
T  37549288 atgatgattgagaaatggaatgagaagacatggttgaaggaaaagggtttt 37549238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 1134556 - 1134478
Alignment:
Q  1 catcatcataatttttctgcaaccacatattggcaactcatttgatgatgattgacaaatggaatgagaagacattgtt 79  Q
    |||| ||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1134556 catcctcataatttttttgcaaccacatataggcaactgatttgatgatgattgacaaatggaatgagaagacattgtt 1134478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 1134472 - 1134373
Alignment:
Q  138 aatgaagaagagagaaagatcatagtgaggaagaaggtggaaataatatgttttaaaattcaaattttgatgattatgttttttattttcgtccctatgt 237  Q
    ||||||||||||||||||| ||||| || ||||||| | |||| |||  |||||||| ||||||  |||||||||||||||| || ||| ||||||||||    
T  1134472 aatgaagaagagagaaagaacatagagacgaagaagttagaaagaatgagttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgt 1134373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 19597549 - 19597638
Alignment:
Q  6 tcataatttttctgcaaccacatattggcaactcatttgatgatgattgacaaatggaatgagaagacattgttcaatgaaatgggtttt 95  Q
    ||||||||||  |||||||||| || || |||||||| ||||||||||||  |||||||| ||||||||||||| || || |||||||||    
T  19597549 tcataattttgttgcaaccacacataggtaactcattggatgatgattgagtaatggaattagaagacattgttgaaggagatgggtttt 19597638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 33489659 - 33489732
Alignment:
Q  164 gaggaagaaggtggaaataatatgttttaaaattcaaattttgatgattatgttttttattttcgtccctatgt 237  Q
    ||||||||||||||||| |||   ||||||| |||||| |||||||||||||||||||| || |||||||||||    
T  33489659 gaggaagaaggtggaaagaatgaattttaaatttcaaaatttgatgattatgttttttaattccgtccctatgt 33489732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 41282720 - 41282674
Alignment:
Q  45 atgatgattgacaaatggaatgagaagacattgttcaatgaaatggg 91  Q
    ||||||||||| ||||||||||||||||||||||| || ||||||||    
T  41282720 atgatgattgagaaatggaatgagaagacattgttgaaggaaatggg 41282674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 41284083 - 41284131
Alignment:
Q  47 gatgattgacaaatggaatgagaagacattgttcaatgaaatgggtttt 95  Q
    ||||||||| |||||||||||||||| |||||| || ||||||||||||    
T  41284083 gatgattgagaaatggaatgagaagagattgttgaaggaaatgggtttt 41284131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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