View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18165_low_1 (Length: 690)

Name: NF18165_low_1
Description: NF18165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18165_low_1
NF18165_low_1
[»] chr7 (5 HSPs)
chr7 (1-679)||(46936764-46937436)
chr7 (197-300)||(36853049-36853151)
chr7 (221-299)||(24547692-24547770)
chr7 (245-299)||(46766091-46766145)
chr7 (239-299)||(35169991-35170049)
[»] chr1 (9 HSPs)
chr1 (440-619)||(36639417-36639596)
chr1 (435-657)||(36634611-36634833)
chr1 (3-139)||(36634994-36635133)
chr1 (2-129)||(36639699-36639826)
chr1 (195-279)||(16979579-16979663)
chr1 (243-302)||(420501-420560)
chr1 (221-302)||(974465-974546)
chr1 (239-293)||(15954009-15954063)
chr1 (247-299)||(14303963-14304015)
[»] chr5 (6 HSPs)
chr5 (191-300)||(35035586-35035695)
chr5 (241-299)||(16230755-16230813)
chr5 (239-288)||(16252635-16252684)
chr5 (240-299)||(8012027-8012086)
chr5 (247-293)||(36639753-36639799)
chr5 (198-234)||(43207914-43207950)
[»] chr8 (4 HSPs)
chr8 (241-299)||(26762885-26762943)
chr8 (239-299)||(30011734-30011794)
chr8 (240-299)||(26815559-26815620)
chr8 (239-275)||(40694463-40694499)
[»] chr3 (6 HSPs)
chr3 (240-290)||(43244854-43244904)
chr3 (248-292)||(42336425-42336469)
chr3 (241-302)||(48553065-48553124)
chr3 (197-236)||(45161775-45161814)
chr3 (239-289)||(7928767-7928817)
chr3 (239-277)||(33262587-33262624)
[»] chr4 (3 HSPs)
chr4 (222-299)||(6468691-6468768)
chr4 (241-279)||(6959316-6959354)
chr4 (244-276)||(41251669-41251701)
[»] scaffold0312 (1 HSPs)
scaffold0312 (243-302)||(10011-10070)
[»] chr2 (4 HSPs)
chr2 (196-301)||(10231798-10231903)
chr2 (241-291)||(26804046-26804096)
chr2 (198-299)||(5262383-5262484)
chr2 (245-286)||(9529531-9529572)
[»] chr6 (5 HSPs)
chr6 (221-293)||(4593883-4593955)
chr6 (240-300)||(8782990-8783050)
chr6 (239-278)||(6893758-6893797)
chr6 (223-275)||(29872548-29872599)
chr6 (199-267)||(33786196-33786264)


Alignment Details
Target: chr7 (Bit Score: 627; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 1 - 679
Target Start/End: Original strand, 46936764 - 46937436
Alignment:
Q  1 aactatcattacaaccttttgctgtaattgtggttccattgaaggtctttgtgttcccacaagtgactctactgtcatagttcaatggtggacctccata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46936764 aactatcattacaaccttttgctgtaattgtggttccattgaaggtctttgtgttcccacaagtgactctactgtcatagttcaatggtggacctccata 46936863  T
Q  101 tccacaacatgccataataggttgttcaaaccctgcaaatatataataatattacaaatttaacaactcttggaaaagttatttatactatactaagagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||    
T  46936864 tccacaacatgccataataggttgttcaaaccctgcaaatatataataatattacaaatttaacaactcttggaaaagttatttatacta-----agagt 46936958  T
Q  201 ttaattttgatgcactcttggtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46936959 ttaattttgatgcactcttggtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaat 46937058  T
Q  301 gtgatgattataatttattcacagcataaaaagctttacaccaacgatgtattatatataaaatcatattacaaactctaaaggaaaaatcaatgaaata 400  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  46937059 gtgatgattataatttattgacagcataaaaagctttacaccaacgatgtat-atatataaaatcataatacaaactctaaaggaaaaatcaatgaaata 46937157  T
Q  401 gataaatgtaataagccaagttactaaccgtatcttgaatagtttgcaatgaggtttgattttatggtgaagatatcaacatatgtgacatttgaatctg 500  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46937158 gataaatgcaataagccaagttactaaccgtatcttgaatagtttgcaatgaggtttgattttatggtgaagatatcaacatatgtgacatttgaatctg 46937257  T
Q  501 gatattgaccctgcaatttactacacagagcatgaagttgtaggttaaaggttttagcagcttggttatgcccactaacacatcctagttcatcaagctt 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  46937258 gatattgaccctgcaatttactacacagagcatgaagttgtaggttaaaggttttaacagcttggttatgcccactaacacatcctagttcatcaagctt 46937357  T
Q  601 tgatggatcagttccaaatttggctacattctgagctaagcatccaagaggacctgtattgtgtatccagaattatcta 679  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  46937358 tgatggatcagttccaaatttggcaacattctgagctaagcatccaagaggacctgtattgtgtatccagaaatatcta 46937436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 197 - 300
Target Start/End: Original strand, 36853049 - 36853151
Alignment:
Q  197 gagtttaattttgatgcactcttggtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatc 296  Q
    ||||||||||||||| |||| | ||| |||||||||| |   |||||  ||||||||| |||||||||||||||||||||||| | ||||||||| ||||    
T  36853049 gagtttaattttgatacactgtcggtataaaaagttt-acattgtcagtaaatcacaaccaatcatatgtgtgactttagaagtagttatgattataatc 36853147  T
Q  297 aaat 300  Q
    ||||    
T  36853148 aaat 36853151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 221 - 299
Target Start/End: Original strand, 24547692 - 24547770
Alignment:
Q  221 gtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 299  Q
    |||||||||||||||   |||||| ||||||||| ||||||||| ||||| |||||||| | |||||||| || |||||    
T  24547692 gtgtaaaaagttttacactgtcaataaatcacaaccaatcatatctgtgattttagaagtagttatgattgaagtcaaa 24547770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 245 - 299
Target Start/End: Complemental strand, 46766145 - 46766091
Alignment:
Q  245 caaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 299  Q
    ||||||| || ||||||||||||||||||||||||||  |||||||||| |||||    
T  46766145 caaatcataaccaatcatatgtgtgactttagaagcaggtatgattaaagtcaaa 46766091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 35170049 - 35169991
Alignment:
Q  239 tgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 299  Q
    ||||||||||||| || |||||||  ||||||||||||||| | ||||||||||| |||||    
T  35170049 tgtcaacaaatcataaccaatcat--gtgtgactttagaagtagttatgattaaagtcaaa 35169991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 440 - 619
Target Start/End: Complemental strand, 36639596 - 36639417
Alignment:
Q  440 tagtttgcaatgaggtttgattttatggtgaagatatcaacatatgtgacatttgaatctggatattgaccctgcaatttactacacagagcatgaagtt 539  Q
    |||||||||||||||| | |||||||||| ||||||||||||||||| ||||||  ||||||||| || |||||||||||||| || | | | ||||| |    
T  36639596 tagtttgcaatgaggtctaattttatggtaaagatatcaacatatgtaacatttacatctggatactggccctgcaatttactgcagaaatcttgaagat 36639497  T
Q  540 gtaggttaaaggttttagcagcttggttatgcccactaacacatcctagttcatcaagctttgatggatcagttccaaat 619  Q
     | | ||||| | ||||||||||  ||||||   || || |||||||||||||||||| || ||||||||||| ||||||    
T  36639496 attgattaaaagctttagcagctaagttatgttaacgaagacatcctagttcatcaagtttcgatggatcagtgccaaat 36639417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 435 - 657
Target Start/End: Complemental strand, 36634833 - 36634611
Alignment:
Q  435 ttgaatagtttgcaatgaggtttgattttatggtgaagatatcaacatatgtgacatttgaatctggatattgaccctgcaatttactacacagagcatg 534  Q
    |||| ||||||||||||||||   |||||||||| ||||||||||||||||| ||||||  |||| |||| || |||||||||||    |||| ||| ||    
T  36634833 ttgagtagtttgcaatgaggtccaattttatggtaaagatatcaacatatgtaacatttagatctagatactggccctgcaattttgcccacaaagcttg 36634734  T
Q  535 aagttgtaggttaaaggttttagcagcttggttatgcccactaacacatcctagttcatcaagctttgatggatcagttccaaatttggctacattctga 634  Q
     |  ||||| |||||||  |||||||||||||| ||  ||| || ||||||||||||||||| |||||||  ||||   |||||| |||| ||||| |||    
T  36634733 caactgtagattaaaggccttagcagcttggttgtgtgcaccaagacatcctagttcatcaatctttgatttatcatggccaaatgtggcaacattttga 36634634  T
Q  635 gctaagcatccaagaggacctgt 657  Q
     | ||||||||||| ||||||||    
T  36634633 cccaagcatccaagtggacctgt 36634611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 3 - 139
Target Start/End: Complemental strand, 36635133 - 36634994
Alignment:
Q  3 ctatcattacaaccttttgctgtaattgtggttccattgaaggtctttgt-gttc--ccacaagtgactctactgtcatagttcaatggtggacctccat 99  Q
    |||||||| ||||||||||||||||||||||| ||||| ||| || |||| |||   |||||||  || | |||||||||||| ||||| ||||||||||    
T  36635133 ctatcattgcaaccttttgctgtaattgtggtcccattcaagatcgttgttgttagtccacaagaaacgcgactgtcatagttaaatggcggacctccat 36635034  T
Q  100 atccacaacatgccataataggttgttcaaaccctgcaaa 139  Q
    ||||||| || ||||||| |||||||||||||||||||||    
T  36635033 atccacagcaagccataaaaggttgttcaaaccctgcaaa 36634994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 129
Target Start/End: Complemental strand, 36639826 - 36639699
Alignment:
Q  2 actatcattacaaccttttgctgtaattgtggttccattgaaggtctttgtgttcccacaagtgactctactgtcatagttcaatggtggacctccatat 101  Q
    ||||| ||| |||||||| ||||||| | |||| ||||| |||  |||||| |  ||||||   || | |||||||||||||||||| || |||||||||    
T  36639826 actattattgcaacctttggctgtaactatggtgccatttaagacctttgtttctccacaaaaaacgcgactgtcatagttcaatggcgggcctccatat 36639727  T
Q  102 ccacaacatgccataataggttgttcaa 129  Q
    |||||||| |||||||| || |||||||    
T  36639726 ccacaacaagccataatcggctgttcaa 36639699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 279
Target Start/End: Original strand, 16979579 - 16979663
Alignment:
Q  195 aagagtttaattttgatgcactcttggtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaag 279  Q
    ||||||||||||||||| |||| |  |||||||||| ||||   |||||||||||||||| |||  |||| ||||||||||||||    
T  16979579 aagagtttaattttgatacactgtcagtgtaaaaagatttacactgtcaacaaatcacaaccaacaatatatgtgactttagaag 16979663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 243 - 302
Target Start/End: Original strand, 420501 - 420560
Alignment:
Q  243 aacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaatgt 302  Q
    |||||| ||||||||||||||||||||| ||| |||| ||||||| ||||| ||||||||    
T  420501 aacaaagcacaatcaatcatatgtgtgatttttgaagtaattatggttaaagtcaaatgt 420560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 302
Target Start/End: Complemental strand, 974546 - 974465
Alignment:
Q  221 gtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaatgt 302  Q
    |||||||||||||||   | | ||||||  |||||||||||||||||||| ||| |||| | ||||| ||||||||||||||    
T  974546 gtgtaaaaagttttacactctgaacaaagtacaatcaatcatatgtgtgatttttgaagtagttatggttaaaatcaaatgt 974465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 15954009 - 15954063
Alignment:
Q  239 tgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaa 293  Q
    |||||| |||||| |||||||| ||| |||||||||||||| | |||||||||||    
T  15954009 tgtcaataaatcagaatcaatcgtatttgtgactttagaagtagttatgattaaa 15954063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 14304015 - 14303963
Alignment:
Q  247 aatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 299  Q
    |||||||| |||||||||| ||||||||| ||| | ||||||||||| |||||    
T  14304015 aatcacaaccaatcatatgagtgactttaaaagtagttatgattaaagtcaaa 14303963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 191 - 300
Target Start/End: Complemental strand, 35035695 - 35035586
Alignment:
Q  191 tactaagagtttaattttgatgcactcttggtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgatt 290  Q
    ||||| ||||||||||||||| |||| | ||| |||||| |||||   |||||  ||||||||| ||||||||||||||| |||||||| | ||||||||    
T  35035695 tactatgagtttaattttgatacactgtcggtataaaaaattttacattgtcagtaaatcacaaccaatcatatgtgtgattttagaagtagttatgatt 35035596  T
Q  291 aaaatcaaat 300  Q
    ||||||||||    
T  35035595 aaaatcaaat 35035586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 241 - 299
Target Start/End: Original strand, 16230755 - 16230813
Alignment:
Q  241 tcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 299  Q
    |||||||||||||| ||||||||||| ||| |||||||| | ||||||||||| |||||    
T  16230755 tcaacaaatcacaaccaatcatatgtttgattttagaagtagttatgattaaagtcaaa 16230813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 16252684 - 16252635
Alignment:
Q  239 tgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatga 288  Q
    |||||||| ||||||||||||||| ||||||||||||||||  |||||||    
T  16252684 tgtcaacacatcacaatcaatcatgtgtgtgactttagaagtgattatga 16252635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 299
Target Start/End: Complemental strand, 8012086 - 8012027
Alignment:
Q  240 gtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 299  Q
    |||||||||||||||||||||||||  ||||||||| ||  | ||||||| |||||||||    
T  8012086 gtcaacaaatcacaatcaatcatatacgtgactttaaaaatagttatgataaaaatcaaa 8012027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 247 - 293
Target Start/End: Original strand, 36639753 - 36639799
Alignment:
Q  247 aatcacaatcaatcatatgtgtgactttagaagcaattatgattaaa 293  Q
    |||||||  |||||||||||||||||||||||| | |||||||||||    
T  36639753 aatcacatgcaatcatatgtgtgactttagaagtagttatgattaaa 36639799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 43207950 - 43207914
Alignment:
Q  198 agtttaattttgatgcactcttggtgtaaaaagtttt 234  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  43207950 agtttaattttcatgcacttttggtgtaaaaagtttt 43207914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 241 - 299
Target Start/End: Complemental strand, 26762943 - 26762885
Alignment:
Q  241 tcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 299  Q
    |||| ||||||||||||||||| ||| |||||||||||| ||||||||||||| |||||    
T  26762943 tcaaaaaatcacaatcaatcatttgtatgactttagaagtaattatgattaaagtcaaa 26762885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 30011734 - 30011794
Alignment:
Q  239 tgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 299  Q
    ||||||||||||| |||||||||||||||||| |||||||| | |||||||| || |||||    
T  30011734 tgtcaacaaatcaaaatcaatcatatgtgtgattttagaagtagttatgattgaagtcaaa 30011794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 240 - 299
Target Start/End: Complemental strand, 26815620 - 26815559
Alignment:
Q  240 gtcaacaaatcacaatcaatcatatgtgt--gactttagaagcaattatgattaaaatcaaa 299  Q
    |||||||||||||||||||||||||||||  ||||||||||  | ||||||| |||||||||    
T  26815620 gtcaacaaatcacaatcaatcatatgtgtgcgactttagaaatagttatgataaaaatcaaa 26815559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 40694463 - 40694499
Alignment:
Q  239 tgtcaacaaatcacaatcaatcatatgtgtgacttta 275  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  40694463 tgtcaacaaaacacaatcaatcatgtgtgtgacttta 40694499  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 43244904 - 43244854
Alignment:
Q  240 gtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgatt 290  Q
    |||||||||||||||||||| |||||||||||||||||||  |||||||||    
T  43244904 gtcaacaaatcacaatcaataatatgtgtgactttagaagtgattatgatt 43244854  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 42336469 - 42336425
Alignment:
Q  248 atcacaatcaatcatatgtgtgactttagaagcaattatgattaa 292  Q
    |||||||||||||||||||||||||||||||  ||||||||||||    
T  42336469 atcacaatcaatcatatgtgtgactttagaattaattatgattaa 42336425  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 48553065 - 48553124
Alignment:
Q  241 tcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaatgt 302  Q
    |||||||||||||||||||||||  ||||||||||||||   ||||||||||| ||||||||    
T  48553065 tcaacaaatcacaatcaatcata--tgtgactttagaagtttttatgattaaattcaaatgt 48553124  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 45161814 - 45161775
Alignment:
Q  197 gagtttaattttgatgcactcttggtgtaaaaagttttat 236  Q
    |||||||||||| ||| |||||||||||||||||||||||    
T  45161814 gagtttaattttaatgaactcttggtgtaaaaagttttat 45161775  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 7928817 - 7928767
Alignment:
Q  239 tgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgat 289  Q
    |||||||| ||| || ||||||||||||||||||||||||| | |||||||    
T  7928817 tgtcaacagatcccactcaatcatatgtgtgactttagaagtagttatgat 7928767  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 33262587 - 33262624
Alignment:
Q  239 tgtcaacaaatcacaatcaatcatatgtgtgactttaga 277  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  33262587 tgtcaacaaa-cacaatcaatcatatgtgtgactttaga 33262624  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 6468768 - 6468691
Alignment:
Q  222 tgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 299  Q
    ||||||||||||||   |||||||||||||||| ||  ||||||| |||||||||||| ||||| ||||||| |||||    
T  6468768 tgtaaaaagttttacactgtcaacaaatcacaaccacgcatatgtatgactttagaagtaattaagattaaagtcaaa 6468691  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 241 - 279
Target Start/End: Complemental strand, 6959354 - 6959316
Alignment:
Q  241 tcaacaaatcacaatcaatcatatgtgtgactttagaag 279  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  6959354 tcaacaaatcacaaccaatcatatgtgtgacttaagaag 6959316  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 244 - 276
Target Start/End: Original strand, 41251669 - 41251701
Alignment:
Q  244 acaaatcacaatcaatcatatgtgtgactttag 276  Q
    ||||||||||||||||||||||||| |||||||    
T  41251669 acaaatcacaatcaatcatatgtgtaactttag 41251701  T

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Target: scaffold0312 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 243 - 302
Target Start/End: Complemental strand, 10070 - 10011
Alignment:
Q  243 aacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaatgt 302  Q
    |||||| ||||||||||||||||||||| ||| |||| ||||||| ||||| ||||||||    
T  10070 aacaaagcacaatcaatcatatgtgtgatttttgaagtaattatggttaaagtcaaatgt 10011  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 301
Target Start/End: Original strand, 10231798 - 10231903
Alignment:
Q  196 agagtttaattttgatgcactcttggtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaat 295  Q
    ||||||||||||||||  | | |  |||||||||||||||   |||| ||| || |||||||||||||||||||| |||||||  | ||||||| ||| |    
T  10231798 agagtttaattttgatatattgtcagtgtaaaaagttttacactgtccacatattacaatcaatcatatgtgtgattttagaaatagttatgataaaagt 10231897  T
Q  296 caaatg 301  Q
    ||||||    
T  10231898 caaatg 10231903  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 241 - 291
Target Start/End: Original strand, 26804046 - 26804096
Alignment:
Q  241 tcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgatta 291  Q
    |||||||||||||||||||| ||| | |||||||||||| |||||| ||||    
T  26804046 tcaacaaatcacaatcaatcttatctctgactttagaagtaattataatta 26804096  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 299
Target Start/End: Original strand, 5262383 - 5262484
Alignment:
Q  198 agtttaattttgatgcactcttggtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatca 297  Q
    |||||||||||||| |||| || ||||||||||||||    ||| || || |||||| || |||||||||||| ||| |||| | ||||||| ||| |||    
T  5262383 agtttaattttgatacactgttagtgtaaaaagtttttcactgttaataagtcacaaacattcatatgtgtgagtttcgaagtagttatgatcaaagtca 5262482  T
Q  298 aa 299  Q
    ||    
T  5262483 aa 5262484  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 286
Target Start/End: Original strand, 9529531 - 9529572
Alignment:
Q  245 caaatcacaatcaatcatatgtgtgactttagaagcaattat 286  Q
    |||||||||| |||||||||||||||||||| ||| ||||||    
T  9529531 caaatcacaaccaatcatatgtgtgactttaaaagtaattat 9529572  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 4593955 - 4593883
Alignment:
Q  221 gtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaa 293  Q
    |||||||||||||||  |||||| |||||||||| ||||||||||  | |||||||||| | ||| |||||||    
T  4593955 gtgtaaaaagttttacggtgtcagcaaatcacaaccaatcatatgatttactttagaagtagttaagattaaa 4593883  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 240 - 300
Target Start/End: Complemental strand, 8783050 - 8782990
Alignment:
Q  240 gtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaat 300  Q
    ||||||||||||||| ||||||||| | ||||||| |||| | ||||||||||| ||||||    
T  8783050 gtcaacaaatcacaaccaatcatatatatgacttttgaagtagttatgattaaagtcaaat 8782990  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 278
Target Start/End: Original strand, 6893758 - 6893797
Alignment:
Q  239 tgtcaacaaatcacaatcaatcatatgtgtgactttagaa 278  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  6893758 tgtcaacaaattacagtcaatcatatgtgtgactttagaa 6893797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 29872599 - 29872548
Alignment:
Q  223 gtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgacttta 275  Q
    |||||||||||||   |||||| ||||||||| ||||||||||||||||||||    
T  29872599 gtaaaaagttttacactgtcaa-aaatcacaaccaatcatatgtgtgacttta 29872548  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 199 - 267
Target Start/End: Complemental strand, 33786264 - 33786196
Alignment:
Q  199 gtttaattttgatgcactcttggtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtg 267  Q
    |||||||||||||  ||  | ||| |||||||||||||  | ||||||||||||||||||| |||||||    
T  33786264 gtttaattttgataaaccgtcggtataaaaagttttatactatcaacaaatcacaatcaattatatgtg 33786196  T

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