View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18165_low_10 (Length: 239)

Name: NF18165_low_10
Description: NF18165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18165_low_10
NF18165_low_10
[»] chr5 (1 HSPs)
chr5 (1-78)||(22361488-22361564)
[»] chr6 (2 HSPs)
chr6 (103-201)||(2662617-2662712)
chr6 (3-83)||(2662542-2662620)
[»] chr4 (1 HSPs)
chr4 (48-99)||(31420253-31420304)
[»] scaffold0155 (2 HSPs)
scaffold0155 (103-201)||(37857-37952)
scaffold0155 (3-83)||(37782-37860)
[»] chr8 (1 HSPs)
chr8 (48-99)||(22928928-22928979)


Alignment Details
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 22361564 - 22361488
Alignment:
Q  1 tgtaattcttttgttgccttttttcttaattcaaagtannnnnnnnaccttttgtttagatgtcattatgtttgtttg 78  Q
    |||||||||||| |||||||||||||||||||||||||         |||||||||||||||||||||||||||||||    
T  22361564 tgtaattcttttcttgccttttttcttaattcaaagtatttttttt-ccttttgtttagatgtcattatgtttgtttg 22361488  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 201
Target Start/End: Original strand, 2662617 - 2662712
Alignment:
Q  103 attttgatcacaatgtttgtcgacaaggatcaaaaagatgaaaatcatcaagactatacatgtgttaattttttgttgtcattatcttctccgatgact 201  Q
    |||||||||||| ||||||| |||| |||| ||||||||||| ||||| ||||| |||   |||||||||||||||| || |||| |||| ||||||||    
T  2662617 attttgatcacactgtttgttgacatggat-aaaaagatgaagatcatgaagaccatag--gtgttaattttttgttctctttatattcttcgatgact 2662712  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 2662542 - 2662620
Alignment:
Q  3 taattcttttgttgccttttttcttaattcaaagtannnnnnnnaccttttgtttagatgtcattatgtttgtttgcattt 83  Q
    |||||||||| ||||||||||||||||||||| ||         ||||||| |||||||||||| ||||||||||||||||    
T  2662542 taattcttttcttgccttttttcttaattcaatgt--ttgtttaaccttttatttagatgtcataatgtttgtttgcattt 2662620  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 31420253 - 31420304
Alignment:
Q  48 ccttttgtttagatgtcattatgtttgtttgcatttagcattcctttaatta 99  Q
    |||||||||||||||||||| |||||| ||||| ||||||||| ||||||||    
T  31420253 ccttttgtttagatgtcattgtgtttgattgcaattagcattcttttaatta 31420304  T

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Target: scaffold0155 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 201
Target Start/End: Original strand, 37857 - 37952
Alignment:
Q  103 attttgatcacaatgtttgtcgacaaggatcaaaaagatgaaaatcatcaagactatacatgtgttaattttttgttgtcattatcttctccgatgact 201  Q
    |||||||||||| | ||||| |||| |||| ||||||||||| ||||| ||||| |||   |||||||||||||||| || |||| |||| ||||||||    
T  37857 attttgatcacactatttgttgacatggat-aaaaagatgaagatcatgaagaccataa--gtgttaattttttgttctctttatattcttcgatgact 37952  T

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Target: scaffold0155; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 37782 - 37860
Alignment:
Q  3 taattcttttgttgccttttttcttaattcaaagtannnnnnnnaccttttgtttagatgtcattatgtttgtttgcattt 83  Q
    |||||||||| || ||||||||||||||||||||          ||||||| |||||||||||| ||||||||||||||||    
T  37782 taattcttttcttaccttttttcttaattcaaag--attttttaaccttttatttagatgtcataatgtttgtttgcattt 37860  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 22928928 - 22928979
Alignment:
Q  48 ccttttgtttagatgtcattatgtttgtttgcatttagcattcctttaatta 99  Q
    |||||||||||||||||||| |||||| ||| | ||||||||| ||||||||    
T  22928928 ccttttgtttagatgtcattgtgtttgattgaaattagcattcttttaatta 22928979  T

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