View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18165_low_2 (Length: 660)

Name: NF18165_low_2
Description: NF18165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18165_low_2
NF18165_low_2
[»] chr3 (1 HSPs)
chr3 (1-650)||(52272233-52272882)


Alignment Details
Target: chr3 (Bit Score: 630; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 1 - 650
Target Start/End: Complemental strand, 52272882 - 52272233
Alignment:
Q  1 cgtgaaagtattccttctcctatggttagtccatattccagctagttatacaatacaatttggtatttcttcgtctcaaagtagtagattatattattct 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52272882 cgtgaaagtattccttctcctatggttagtcaatattccagctagttatacaatacaatttggtatttcttcgtctcaaagtagtagattatattattct 52272783  T
Q  101 aatgcattgattttggacatctaactggggactgaactgatatttgtataattgtatctgctctcagtatattttgatggcattaagaaatgtgataata 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  52272782 aatgcattgattttggacatctaactggggactgaactgatatttgtataattgtatctgctctcagtatattttgatggtattaagaaatgtgataata 52272683  T
Q  201 aataaactataaattgagaaatttgaaatccataagttacaaagtatagaagatatcaaatataactgatttatttttgcccttgaaatctttgtgttag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52272682 aataaactataaattgagaaatttgaaatccataagttacaaagtatagaagatatcaaatataactgatttatttttgcccttgaaatctttgtgttag 52272583  T
Q  301 tttattacatgggagatgttggttttcatcatgttaatattgctatctaaatcattgcttatgatgagtttcaggatgtggtttcagaaactatacatgc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52272582 tttattacatgggagatgttggttttcatcatgttaatattgctatctaaatcattgcttatgatgagtttcaggatgtggtttcagaaactatacatgc 52272483  T
Q  401 atttcgagctcccgttgatgatacccaggtattctgtcacccatttattcagctgctttcttaaaaatgtagattttgttcatcaagtgcttatttgtct 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||    
T  52272482 atttcgagctcccgttgatgatacccaggtattctgtcacccatttattcagacgctttcttaaaaatgtagattttgttcaccaagtgcttatttgtct 52272383  T
Q  501 ttgatttctaggatctcttttctgattctgaaataaatgatattaaagaagaggccctaaatgggaagttgaataagccttccgaagaagtgtttgcccc 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52272382 ttgatttctaggatctcttttctgattctgaaataaatgatattaaagaagaggccctaaatgggaagttgaataagccttccgaagaagtgtttgcccc 52272283  T
Q  601 atctatgctttcaatgaacttgaaacttgattctgctcctgttgatgatg 650  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52272282 atctatgctttcaatgaacttgaaacttgattctgctcctgttgatgatg 52272233  T

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