View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18165_low_3 (Length: 489)
Name: NF18165_low_3
Description: NF18165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18165_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 469; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 40623816 - 40623344
Alignment:
| Q |
1 |
aagtgaaacacaaaaagcttatggataagaaaaaagaacctgctacattgctggcagaacctttgcttatgtccaccaattgtgacctgtgcagtcttgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40623816 |
aagtgaaacacaaaaagcttatggataagaaaaaagaacctgctacattgctggcagaacctttgcttatgtccaccaattgtgacctgtgcagtcttgg |
40623717 |
T |
|
| Q |
101 |
aatgaagttcacagaccttatgacgcctatgaaagtctctacagttactaagatcagcttgacaaccatccacaagacatgaaactatctgagtcccatt |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40623716 |
aatgaagttcacagaccttatgacgcctatgatagtctctacagttactaagatcagcttgacaaccatccacaagacatgaaactatctgagtcccatt |
40623617 |
T |
|
| Q |
201 |
gttaatagctctagctctcttagatgaccctgaagttgatgatgatgaagatgtcattttggtaaatccaccaacatctttggactttgttagccctgat |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40623616 |
gttaatagctctagctctcttagatgaccctgaagttgatgatgatgaagatgtcattttggtaaatccaccaacatctttggactttgttagccctgat |
40623517 |
T |
|
| Q |
301 |
tcagtgctagaatttccaacatggccaagcttcaaatcaacagaaaaatctccttttgttctgtaatctccaaacctcctaattgaaccatccattgttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40623516 |
tcagtgctagaatttccaacatggccaagcttcaaatcaacagaaaaatctccttttgttctgtaatctccaaacctcctaattgaaccatccattgttt |
40623417 |
T |
|
| Q |
401 |
ctatgttgtttaaggttccttgatccatttcagttaaatcccatgaaggtgctttcaaattactccactccat |
473 |
Q |
| |
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| T |
40623416 |
ctatgttgtttaaggttccttgatccatttcagttaaatcccatgaaggtgctttcaaattactccactccat |
40623344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 56 - 347
Target Start/End: Complemental strand, 27512125 - 27511834
Alignment:
| Q |
56 |
agaacctttgcttatgtccaccaattgtgacctgtgcagtcttggaatgaagttcacagaccttatgacgcctatgaaagtctctacagttactaagatc |
155 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||| |||||| |||||||||| ||||||||||| ||| ||||| | ||||| ||||||||||||| |
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| T |
27512125 |
agaacctttgcttatgtccaccaagtgtcacctgtgaagtctttgaatgaagtttgcagaccttatggcgcatatgatatcctctatagttactaagatc |
27512026 |
T |
|
| Q |
156 |
agcttgacaaccatccacaagacatgaaactatctgagtcccattgttaatagctctagctctcttagatgaccctgaagttgatgatgatgaagatgtc |
255 |
Q |
| |
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|||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
27512025 |
agcttgacaaccatccgcaagacttgaaactatctgagttccattgttaatagctctagctttcttagatgaccctgaagttgaagatgatgaagatgtt |
27511926 |
T |
|
| Q |
256 |
attttggtaaatccaccaacatctttggactttgttagccctgattcagtgctagaatttccaacatggccaagcttcaaatcaacagaaaa |
347 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27511925 |
attttggtaaatccaccaacatctttggactttgtaagccctgattcagcgctagaatttccaacatggccaagcttcaaatcaacaaaaaa |
27511834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 222 - 349
Target Start/End: Original strand, 27270398 - 27270525
Alignment:
| Q |
222 |
agatgaccctgaagttgatgatgatgaagatgtcattttggtaaatccaccaacatctttggactttgttagccctgattcagtgctagaatttccaaca |
321 |
Q |
| |
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|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
27270398 |
agatgaccctgaagttgaagatgatgaagatttcattttggtaaatccaccaacatctttggactttgtaagccctgatttagtgctagaatttccaaca |
27270497 |
T |
|
| Q |
322 |
tggccaagcttcaaatcaacagaaaaat |
349 |
Q |
| |
|
|||||||||||||||||| || |||||| |
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| T |
27270498 |
tggccaagcttcaaatcagcaaaaaaat |
27270525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 38 - 186
Target Start/End: Complemental strand, 45410729 - 45410581
Alignment:
| Q |
38 |
acctgctacattgctggcagaacctttgcttatgtccaccaattgtgacctgtgcagtcttggaatgaagttcacagaccttatgacgcctatgaaagtc |
137 |
Q |
| |
|
|||||||||| || |||||||||||||| ||| | |||| |||||| |||| || ||||||||||||||||||||| |||||||||||||||||| | || |
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| T |
45410729 |
acctgctacactgttggcagaacctttgtttaaggccacaaattgtaacctctggagtcttggaatgaagttcacaaaccttatgacgcctatgataatc |
45410630 |
T |
|
| Q |
138 |
tctacagttactaagatcagcttgacaaccatccacaagacatgaaact |
186 |
Q |
| |
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|||||| ||||||||||||| | || |||||||||||||| |||||| |
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|
| T |
45410629 |
tctacaattactaagatcagaattgcacccatccacaagacaagaaact |
45410581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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