View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18165_low_5 (Length: 414)
Name: NF18165_low_5
Description: NF18165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18165_low_5 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 30 - 414
Target Start/End: Original strand, 36739396 - 36739786
Alignment:
| Q |
30 |
agagagaagaacagatacttgtttacaattatgtcaatttttcaagaagtaccgaggggaaagtttatctacaaccacacattcaagacaactataaaat |
129 |
Q |
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| T |
36739396 |
agagagaagaacagatacttgtttacaattatgtcaatttttcaagaagtaccgaggggaaagtttatctactatcacacattcaagacaactataaaat |
36739495 |
T |
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| Q |
130 |
atcactaggacacaccttaagaatggatatcatattaagaagtgtataaaagaccgaaacttagaaacaagagttattctcaatcagtcaaaaccttaat |
229 |
Q |
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| T |
36739496 |
atcactaggacacaccttaagaatggatatcatattaagaagtgtataaaagacagaaacttagaaacaaaagttattctcaatcagtcaaaacattaat |
36739595 |
T |
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| Q |
230 |
aaacctgttgcagctttaggggaggtttattacagacatcacagttagtagagaaacaaaatatacctaatcttctgataaaacttgtcgccttccaaag |
329 |
Q |
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| T |
36739596 |
aaacctactgcagctttagggggggtttattacagacatcacagttagtagagaaacaaaatatacctaatattttgataaaacttgtcgccttccaaag |
36739695 |
T |
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| Q |
330 |
ctcc------cgctaaaatttcagtgaaaacagcctggttggcatcagatgctgggtggtacgacccaatagctctacatagaagaagtta |
414 |
Q |
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| T |
36739696 |
ctcctgtcagtgctaaaatttcaatgaaaacagcctggttggcatcagatgctgagtggttggacccaatagctctacatagaagaagtta |
36739786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 161 - 414
Target Start/End: Original strand, 36737900 - 36738158
Alignment:
| Q |
161 |
atattaagaagtgtataaaagaccgaaacttagaaacaagagttattctcaatcagtcaaaaccttaataaacctgttgcagctttaggggaggtttatt |
260 |
Q |
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| T |
36737900 |
atattaagaagtgtataaaagacagaaacttagaaacaagagttattctcaatcaatcaaaacattaataaacctgctgcagctttaggggaggtttatt |
36737999 |
T |
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| Q |
261 |
acagacatcacagttagtagagaaacaaaatatacctaatcttctgataaaacttgtcgccttccaaagctccc------gctaaaatttcagtgaaaac |
354 |
Q |
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| T |
36738000 |
acagacatcacagttagtagagaaacgaaatatatc-aatcttctgataaaacttgtcgccttccaaagctcccgtcagtgctaaaatttcattgaaaac |
36738098 |
T |
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| Q |
355 |
agcctggttggcatcagatgctgggtggtacgacccaatagctctacatagaagaagtta |
414 |
Q |
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| T |
36738099 |
agcctggttggcatcagatgctgagtggtaggacccaacaactctacataaaagaagtta |
36738158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 300 - 414
Target Start/End: Original strand, 36722133 - 36722253
Alignment:
| Q |
300 |
tcttctgataaaacttgtcgccttccaaagctcccg------ctaaaatttcagtgaaaacagcctggttggcatcagatgctgggtggtacgacccaat |
393 |
Q |
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| T |
36722133 |
tcttctgataaaacttgtcgccttctaaagctcctgttagttctaaaatttcagtgaaaacaacctggttggcatcagatgctgagtggtaggacccaac |
36722232 |
T |
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| Q |
394 |
agctctacatagaagaagtta |
414 |
Q |
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| T |
36722233 |
agctctacatagaagaagtta |
36722253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 36737866 - 36737903
Alignment:
| Q |
256 |
ttattacagacatcacagttagtagagaaacaaaatat |
293 |
Q |
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| T |
36737866 |
ttattacagacatcacagttagcagagaaacaaaatat |
36737903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 36739286 - 36739326
Alignment:
| Q |
249 |
gggaggtttattacagacatcacagttagtagagaaacaaa |
289 |
Q |
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| T |
36739286 |
gggaggtttattacaggcatcacagttagcagagaaacaaa |
36739326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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