View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18165_low_6 (Length: 391)
Name: NF18165_low_6
Description: NF18165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18165_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 12 - 373
Target Start/End: Original strand, 4982562 - 4982923
Alignment:
| Q |
12 |
gagattatcaggaagaaaggttatgatggagccaaggcagatatttggtcttgtggtgttattctctttgttctattggcaggttttcttcctttcaatg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4982562 |
gagattatcaggaagaaaggttatgatggagccaaggcagatatttggtcttgtggtgttattctctttgttctattggcaggttttcttcctttcaatg |
4982661 |
T |
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| Q |
112 |
atagaaatttaatggagatgtataagaagattgcaactgctgatttcaagtttccacaatggtttcattctgatgtgaaaaggcttctttatagaatcct |
211 |
Q |
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| T |
4982662 |
atagaaatttaatggagatgtataagaagattgcaactgctgatttcaagtttccacaatggtttcattctgatgtgaaaaggcttctttatagaatcct |
4982761 |
T |
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| Q |
212 |
tgatcctgatccaaaaacaagaattactattaacaagattatgcaaaatagttggtttagaaaagggtataaacagattgaaggaccacatttatcgcct |
311 |
Q |
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| T |
4982762 |
tgatcctgatccaaaaacaagaattactattaacaagattatgcaaaatagttggtttagaaaagggtataaacagattgaaggaccacatttatcgcct |
4982861 |
T |
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| Q |
312 |
acacacggcgatatctcagatgttcataatgcatttgatgatttgtcaccactatcaagtcc |
373 |
Q |
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| T |
4982862 |
acacacggcgatatctcagatgttcataatgcatttgatgatttgtcaacactatcaagtcc |
4982923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 45268314 - 45268263
Alignment:
| Q |
30 |
ggttatgatggagccaaggcagatatttggtcttgtggtgttattctctttg |
81 |
Q |
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| T |
45268314 |
ggttatgatggatcaaaagctgatatttggtcttgtggtgttattctttttg |
45268263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 142
Target Start/End: Complemental strand, 31903992 - 31903873
Alignment:
| Q |
23 |
gaagaaaggttatgatggagccaaggcagatatttggtcttgtggtgttattctctttgttctattggcaggttttcttcctttcaatgatagaaattta |
122 |
Q |
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||||| ||||||||||||||| |||| ||||||||||| |||||| |||| || |||||||| |||| |||| |||||| || |||||| |||||| |
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| T |
31903992 |
gaagagaggttatgatggagctaaggtggatatttggtcatgtggtattatactgtttgttcttgtggctggttatcttccatttaatgatccaaatttg |
31903893 |
T |
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| Q |
123 |
atggagatgtataagaagat |
142 |
Q |
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|||| |||||||| |||||| |
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| T |
31903892 |
atggtgatgtataggaagat |
31903873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 31892737 - 31892849
Alignment:
| Q |
30 |
ggttatgatggagccaaggcagatatttggtcttgtggtgttattctctttgttctattggcaggttttcttcctttcaatgatagaaatttaatggaga |
129 |
Q |
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||||||||||| |||| || ||||||||||||||||| ||| |||| |||||| || | || |||| | | ||||||||||| ||||| ||||||| |
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| T |
31892737 |
ggttatgatggttccaaagctgatatttggtcttgtggagttgttctttttgttttacttgctggttatgtacctttcaatgactccaatttgatggaga |
31892836 |
T |
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| Q |
130 |
tgtataagaagat |
142 |
Q |
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|||||| |||||| |
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| T |
31892837 |
tgtataggaagat |
31892849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 27278929 - 27279044
Alignment:
| Q |
27 |
aaaggttatgatggagccaaggcagatatttggtcttgtggtgttattctctttgttctattggcaggttttcttcctttcaatgatagaaatttaatgg |
126 |
Q |
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||||| ||||| || ||||| || ||||||||||||||||| | |||| |||||| |||||||||||| ||||||||| |||| |||||| || | |
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| T |
27278929 |
aaagggtatgacggtgccaaagccgatatttggtcttgtggaatagttctgtttgttttattggcaggttatcttccttttcatgactcaaatttgatag |
27279028 |
T |
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| Q |
127 |
agatgtataagaagat |
142 |
Q |
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| T |
27279029 |
agatgtataggaagat |
27279044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 54659712 - 54659765
Alignment:
| Q |
23 |
gaagaaaggttatgatggagccaaggcagatatttggtcttgtggtgttattct |
76 |
Q |
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|||||| ||||| || || || ||||| |||||||||||||||||||||||||| |
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| T |
54659712 |
gaagaagggttacgacggtgctaaggctgatatttggtcttgtggtgttattct |
54659765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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