View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18166_high_1 (Length: 626)
Name: NF18166_high_1
Description: NF18166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18166_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 11 - 608
Target Start/End: Complemental strand, 6012273 - 6011676
Alignment:
| Q |
11 |
cacagagcaatagcgatgtgttcaaaaaccgctactctatagcaccgatattaaacaaaattgattcttactcgacgccatatgagaaaaaatgatggaa |
110 |
Q |
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| T |
6012273 |
cacagagcaatagcgatgtgttcaaaaaccgctactctatagcaccgatattaaacaaaattgattcttactcgacgccatatgagaaaaaatgatggaa |
6012174 |
T |
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| Q |
111 |
attaccttgctatgttgctccatcctgacatctaagggaacatcgtcaacctttgtgaaacctccaagaggatgaagcaataaaatcggatttttgtaac |
210 |
Q |
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| T |
6012173 |
attaccttgctatgttgctccatcctgacatctaagggaacatcgtcaacctttgtgaaacctccaagaggatgaagcaataaaatcggatttttgtaac |
6012074 |
T |
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| Q |
211 |
ccatgtctagtaggcgttgacgagtatcgttcattaacaaggcatgaccgttatgcacaggatttcttaactgaaaggcgaaaactgcatcagctttacg |
310 |
Q |
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| T |
6012073 |
ccatgtctagtagacgttgacgagtatcgttcattaacaaggcatgaccgttatgcacaggatttcttaactgaaaggcgaaaactgcatcagctttacg |
6011974 |
T |
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| Q |
311 |
cctatcaaattcttcccgaagttgcttgggagatagcctgtagttatcaagaccatcattgtatttgataggttttagcacttccaaatctcctccaata |
410 |
Q |
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| T |
6011973 |
cctatcaaattcttcccgaagttgcttgggagatagcctgtagttatcaagaccatcattgtatttgataggttttagcacttccaaatctcctccaata |
6011874 |
T |
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| Q |
411 |
agccaatttccagctggagcaatgacctcctcaacataaggcaatcctggagcagttgttccccaggttctagctattctttcttctttgttatgcttgt |
510 |
Q |
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| T |
6011873 |
agccaatttccagctggagcaatgacctcctcaacataaggcaatcctggagcagttgttccccaggttctagctattctttcttctttgttatgcttgt |
6011774 |
T |
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| Q |
511 |
agatttcaatgctgcaaagaagttaaattaatgttcattggttaatgaaaaaggaaaactcagagacaccatgacaggagtttacttaaatagtcata |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6011773 |
agatttcaatgctgcaaagaagttaaattaatgttcattggttaatgaaaaatgaaaactcagagacaccatgacaggagtttacttaaatagtcata |
6011676 |
T |
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