View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18166_high_19 (Length: 215)
Name: NF18166_high_19
Description: NF18166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18166_high_19 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 52483868 - 52484076
Alignment:
| Q |
1 |
gtgctggttcgtttttgttgagattgaaggacatgactcgttgtaaaagagacggttttctaacgagttgaggcttagttgagtcagactcagactcggg |
100 |
Q |
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| T |
52483868 |
gtgctggtacgtttttgttgagattgaaggacatgactcgttgtaaaagagacggttttctaacgagttgaggcttagttgagtcagactcagactcggg |
52483967 |
T |
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| Q |
101 |
ttgaacgtaatgtgtctgactctgtggatattgtggttcgtgtttgttgagattgaaggacataactctctctaacaaagaaggttttcgaacgagttga |
200 |
Q |
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| T |
52483968 |
ttgaacgtaatgtg------tctgtggatattgtggttcgtgtttgttgagattgaaggacataactctctctaacaaagaaggttttcgaacgagttga |
52484061 |
T |
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| Q |
201 |
gggtgagtgaactcg |
215 |
Q |
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| T |
52484062 |
gggtgagtgaactcg |
52484076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 52464704 - 52464762
Alignment:
| Q |
1 |
gtgctggttcgtttttgttgagattgaaggacatgactcgttgtaaaagagacggtttt |
59 |
Q |
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|||||||||||| ||||||||||||||| |||| |||||| ||||| || || |||||| |
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| T |
52464704 |
gtgctggttcgtgtttgttgagattgaaagacaagactcgctgtaacagtgaaggtttt |
52464762 |
T |
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