View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18166_high_5 (Length: 435)
Name: NF18166_high_5
Description: NF18166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18166_high_5 |
 |  |
|
| [»] scaffold0294 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 17)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 270 - 425
Target Start/End: Complemental strand, 4334365 - 4334210
Alignment:
| Q |
270 |
gtataagaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcac |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4334365 |
gtataagaagttcttacagtatgttctgacaatacatcaagcacatcctcatgaaaccacaacctactacgttcctcaggctccattggtgatttctcac |
4334266 |
T |
 |
| Q |
370 |
gaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttctta |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4334265 |
gaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttctta |
4334210 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 4334614 - 4334429
Alignment:
| Q |
19 |
tttgttccctgtgaaatataaaggaccaaaagttaaacatgctatagagatnnnnnnnnnntgttgtaatgataccaataatttgttactaggagcacag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4334614 |
tttgttccctgtgaaatataaaggaccaaaagttaaacatgctatagagataaaaaaaa--tgttgtaatgataccaataatttgttactaggagcacag |
4334517 |
T |
 |
| Q |
119 |
atgcacaaaatgattaataaccaaactaatattcaaagcttttgcgctaacaacagcacaaatgtattttgcttttaaagtttgagat |
206 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4334516 |
aagcacaaaatgattaataaccaaactaatattcaaagcttttgcgctaacaacagcacaaatgtattttgcttttaaagtttgagat |
4334429 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 270 - 428
Target Start/End: Original strand, 4322291 - 4322449
Alignment:
| Q |
270 |
gtataagaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcac |
369 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4322291 |
gtatatgaagttcttacagtatgttctgacaatacatcaagcacatcatcatgaaaccacaacctactacgttcctcaggctccattggtgatttctcac |
4322390 |
T |
 |
| Q |
370 |
gaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca |
428 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4322391 |
gaatgatttcccttcccatatctcgcagcaaatcatgcatgccaagcttgttcttatca |
4322449 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 270 - 428
Target Start/End: Original strand, 4125629 - 4125787
Alignment:
| Q |
270 |
gtataagaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcac |
369 |
Q |
| |
|
||||| ||| ||||||| |||||||||||||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4125629 |
gtatatgaaattcttaccgtatgttctgacaatatatcaatcacatcctcatgataccacaacctactacgttcctcaggctccattggtgatttctcac |
4125728 |
T |
 |
| Q |
370 |
gaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca |
428 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4125729 |
gaatgatttctcttcccatatctcgcagcaaatcatgcatgccaagcttgttcttatca |
4125787 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 270 - 428
Target Start/End: Complemental strand, 4352042 - 4351884
Alignment:
| Q |
270 |
gtataagaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcac |
369 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4352042 |
gtatatgaagttcttacagtatgttttgacaatacatcaagcacatccccgtgaaaccacaacctactacgttcctcaggctcctttggtgatttctcac |
4351943 |
T |
 |
| Q |
370 |
gaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca |
428 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
4351942 |
gaatgatttctcttcccatatctcgcagcaaatcatgcatgccaagcttgtttttatca |
4351884 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 270 - 428
Target Start/End: Complemental strand, 4359223 - 4359065
Alignment:
| Q |
270 |
gtataagaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcac |
369 |
Q |
| |
|
||||| ||||||||||| ||||||||| |||| ||||||| |||||||||| ||||||||| ||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
4359223 |
gtatatgaagttcttacggtatgttctaacaagacatcaatcacatcctcatgaaaccacagcctactatgttcctcaggctcctttggtgatttctcac |
4359124 |
T |
 |
| Q |
370 |
gaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca |
428 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4359123 |
gaatgatttctcttcccatatctcggagcaaatcatgcatgccaagcttgttcttatca |
4359065 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 281 - 428
Target Start/End: Complemental strand, 4343743 - 4343596
Alignment:
| Q |
281 |
tcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttct |
380 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||| || ||| ||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
4343743 |
tcttacagtatgttctaacaagacatcaagcacgtcttcatgaaaccacaacctactatgttcctcaggctcctttggcgatttctcacgaatgatttct |
4343644 |
T |
 |
| Q |
381 |
cttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca |
428 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4343643 |
cttcccatatctcgcagcaaatcatgcatgccaagcttgttcttatca |
4343596 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 270 - 428
Target Start/End: Original strand, 4134970 - 4135129
Alignment:
| Q |
270 |
gtataagaagttcttacagtatgttctgacaa-tacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctca |
368 |
Q |
| |
|
|||||||| ||||||||| | |||| |||||| ||||||| | ||||||||| ||||||| ||||||||||| | ||| | | | |||||||||||| |
|
|
| T |
4134970 |
gtataagacgttcttacattttgttatgacaaatacatcatgaacatcctcatgaaaccataacctactacgcttctcgagtttctttggtgatttctgt |
4135069 |
T |
 |
| Q |
369 |
cgaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca |
428 |
Q |
| |
|
|| ||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||| |
|
|
| T |
4135070 |
cggatgatctctcttcccatatctcgtagcaaatcatgcattccaagcttgtttttatca |
4135129 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 173
Target Start/End: Complemental strand, 4343971 - 4343880
Alignment:
| Q |
82 |
ttgtaatgataccaataatttgttactaggagcacagatgcacaaaatgattaataaccaaactaatattcaaagcttttgcgctaacaaca |
173 |
Q |
| |
|
||||||||| |||||| ||||||||||||||| || ||||||| ||||| | ||||||||||||||||||| ||| || |||||||||| |
|
|
| T |
4343971 |
ttgtaatgaaaccaatcatttgttactaggagacgggaagcacaaactgattcacaaccaaactaatattcaaaacttctgtgctaacaaca |
4343880 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 4352193 - 4352152
Alignment:
| Q |
137 |
aaccaaactaatattcaaagcttttgcgctaacaacagcaca |
178 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4352193 |
aaccaaactaatattgaaagcttttgcgctaacaacagcaca |
4352152 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 4352351 - 4352303
Alignment:
| Q |
19 |
tttgttccctgtgaaatataaaggaccaaaagttaaacatgctatagag |
67 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
4352351 |
tttgttccctgagaaatataaaggaccaaaagtaaaacatcttatagag |
4352303 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 4359395 - 4359343
Alignment:
| Q |
121 |
gcacaaaatgattaataaccaaactaatattcaaagcttttgcgctaacaaca |
173 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||| ||| || |||||||||| |
|
|
| T |
4359395 |
gcacaaaatgattcacaaccaaactaatattcaaaacttctgtgctaacaaca |
4359343 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 422
Target Start/End: Complemental strand, 6751582 - 6751486
Alignment:
| Q |
326 |
ccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttc |
422 |
Q |
| |
|
|||||||||||| || | |||||| |||| |||||||| |||| ||| |||| ||||||||| |||| | |||||||||||| | |||||||||| |
|
|
| T |
6751582 |
ccacaacctactgcgattctcaggatccagtggtgattcctcataaattatttgtcttcccatgtctctcaacaaatcatgcattctaagcttgttc |
6751486 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 422
Target Start/End: Original strand, 6547109 - 6547231
Alignment:
| Q |
300 |
aatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttctcttcccatatctcgaagca |
399 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||| || | ||| || || | ||| |||| |||| ||| |||| ||||||||| |||| | || |
|
|
| T |
6547109 |
aatacatcaagcgcatcctcacggcgccacaacctactgcggttctccggatcaaatggcgattcctcataaattatttgtcttcccatgtctctcaaca |
6547208 |
T |
 |
| Q |
400 |
aatcatgcatgccaagcttgttc |
422 |
Q |
| |
|
|||||||||| | |||||||||| |
|
|
| T |
6547209 |
aatcatgcattctaagcttgttc |
6547231 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 4322126 - 4322170
Alignment:
| Q |
137 |
aaccaaactaatattcaaagcttttgcgctaacaacagcacaaatg |
182 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| ||||||| |
|
|
| T |
4322126 |
aaccaaactaa-attcaaagcttttgtgctaacaacagaacaaatg |
4322170 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 4321968 - 4322016
Alignment:
| Q |
19 |
tttgttccctgtgaaatataaaggaccaaaagttaaacatgctatagag |
67 |
Q |
| |
|
|||||||||| ||||||||||||||||| || | |||||||||| |||| |
|
|
| T |
4321968 |
tttgttccctatgaaatataaaggaccagaattaaaacatgctacagag |
4322016 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 4344072 - 4344025
Alignment:
| Q |
19 |
tttgttccctgtgaaatataaaggaccaaaagttaaacatgctatagag |
67 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| |||||| |||||||| |
|
|
| T |
4344072 |
tttgttccctgtgaaatataaaagacc-aaagtaaaacatcctatagag |
4344025 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 4e-45; HSPs: 22)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 276 - 428
Target Start/End: Original strand, 5104067 - 5104219
Alignment:
| Q |
276 |
gaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatga |
375 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||| ||| ||||||||||||| | ||| ||||| ||||| |||||||||||||||||||| |
|
|
| T |
5104067 |
gaagttcttaccgtatgttctgacaatacatgaagcacatcgtcatgaaaccacaacctgcaacgctcctcgagctcctctggtgatttctcacgaatga |
5104166 |
T |
 |
| Q |
376 |
tttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca |
428 |
Q |
| |
|
||||||||||||||||||| | |||||||||||| ||||| |||||||||||| |
|
|
| T |
5104167 |
tttctcttcccatatctcgcaacaaatcatgcattccaagtttgttcttatca |
5104219 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 276 - 428
Target Start/End: Complemental strand, 5094848 - 5094696
Alignment:
| Q |
276 |
gaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatga |
375 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| ||||||||| ||| ||||||||||||| | ||| ||||| ||||| |||||||||||||||||||| |
|
|
| T |
5094848 |
gaagttcttacagtttgttctgataatacatgaagcacatcatcatgaaaccacaacctgcaacgctcctcgagctcctctggtgatttctcacgaatga |
5094749 |
T |
 |
| Q |
376 |
tttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca |
428 |
Q |
| |
|
||||||||||||||||||| | |||||||||||| ||||| |||||||||||| |
|
|
| T |
5094748 |
tttctcttcccatatctcgcaacaaatcatgcattccaagtttgttcttatca |
5094696 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 276 - 425
Target Start/End: Original strand, 5158696 - 5158845
Alignment:
| Q |
276 |
gaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatga |
375 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| ||||||||| ||| ||||||||||||| | ||| ||||| |||| |||||||||||||||||||| |
|
|
| T |
5158696 |
gaagttcttacagtttgttctgataatacatgaagcacatcgtcatgaaaccacaacctgcaacgctcctcgatctcctctggtgatttctcacgaatga |
5158795 |
T |
 |
| Q |
376 |
tttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttctta |
425 |
Q |
| |
|
||||||||||||||||||| | |||||||||||| ||||| ||||||||| |
|
|
| T |
5158796 |
tttctcttcccatatctcgcaacaaatcatgcattccaagtttgttctta |
5158845 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 280 - 424
Target Start/End: Complemental strand, 5342497 - 5342353
Alignment:
| Q |
280 |
ttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttc |
379 |
Q |
| |
|
||||||| || |||||||| |||||||||||||||||||| ||| |||||||| ||||| ||| || ||||| |||||||||||||||||| |||||| |
|
|
| T |
5342497 |
ttcttacggtttgttctgataatacatcaagcacatcctccttaaagcacaacctgctacgctccccaagctcctttggtgatttctcacgaacgatttc |
5342398 |
T |
 |
| Q |
380 |
tcttcccatatctcgaagcaaatcatgcatgccaagcttgttctt |
424 |
Q |
| |
|
||||||||||||||| |||||||| ||||| ||||| |||||||| |
|
|
| T |
5342397 |
tcttcccatatctcgcagcaaatcgtgcattccaagtttgttctt |
5342353 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 276 - 428
Target Start/End: Complemental strand, 5369267 - 5369115
Alignment:
| Q |
276 |
gaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatga |
375 |
Q |
| |
|
|||| ||||||||| || ||||| ||||||| ||||||||||||| ||||||||||||| | ||| ||||| |||| |||||||||| ||||||||| |
|
|
| T |
5369267 |
gaagatcttacagtttgatctgataatacatgaagcacatcctcatgaaaccacaacctgcaacgctcctcgagctcttctggtgatttcccacgaatga |
5369168 |
T |
 |
| Q |
376 |
tttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca |
428 |
Q |
| |
|
||||||||||||||||||| | |||||||||||| ||||| |||||||||||| |
|
|
| T |
5369167 |
tttctcttcccatatctcgcaacaaatcatgcattccaagtttgttcttatca |
5369115 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 276 - 428
Target Start/End: Complemental strand, 5424560 - 5424408
Alignment:
| Q |
276 |
gaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatga |
375 |
Q |
| |
|
|||||||||||||| || ||||| ||||||| ||||||||||||| ||||||||||||| | ||| ||||| |||| |||||||||| ||||||||| |
|
|
| T |
5424560 |
gaagttcttacagtttgatctgataatacatgaagcacatcctcatgaaaccacaacctgcaacgctcctcgagctcttctggtgatttcccacgaatga |
5424461 |
T |
 |
| Q |
376 |
tttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca |
428 |
Q |
| |
|
||||||||||||||||||| | |||||||||||| ||||| ||||| |||||| |
|
|
| T |
5424460 |
tttctcttcccatatctcgcaacaaatcatgcattccaagtttgttattatca |
5424408 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 270 - 428
Target Start/End: Original strand, 5355805 - 5355963
Alignment:
| Q |
270 |
gtataagaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcac |
369 |
Q |
| |
|
||||| ||||||||||||| || ||||| || |||||||||||||| ||| ||| |||||| || |||||| ||||||| ||| ||||||||||||| |
|
|
| T |
5355805 |
gtatatgaagttcttacagattgatctgataaaacatcaagcacatcatcatgaagccacaatctgctacgtgcctcagggtcctccggtgatttctcac |
5355904 |
T |
 |
| Q |
370 |
gaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca |
428 |
Q |
| |
|
||| || |||||||||||||||||| |||||||||||||| | |||| | ||||||||| |
|
|
| T |
5355905 |
gaacgacttctcttcccatatctcgtagcaaatcatgcattctaagcctattcttatca |
5355963 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 276 - 424
Target Start/End: Original strand, 5068269 - 5068417
Alignment:
| Q |
276 |
gaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatga |
375 |
Q |
| |
|
|||||||||||||| |||||||| ||||| | |||| ||||||| ||||||||||||| | ||| ||||| |||| |||||||||| |||||| || |
|
|
| T |
5068269 |
gaagttcttacagtttgttctgataatacttgaagcgcatcctcctgaaaccacaacctgcaacgctcctcgagctcttctggtgatttcccacgaacga |
5068368 |
T |
 |
| Q |
376 |
tttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttctt |
424 |
Q |
| |
|
||||||||||||||||||| | |||||||||||| ||||| |||||||| |
|
|
| T |
5068369 |
tttctcttcccatatctcgcaacaaatcatgcattccaagtttgttctt |
5068417 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 270 - 426
Target Start/End: Complemental strand, 5175679 - 5175523
Alignment:
| Q |
270 |
gtataagaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcac |
369 |
Q |
| |
|
||||||||||||||||| || ||| ||| || |||||| ||||||||| ||||||||||||| ||||| ||||||||||||||| ||| ||| | || |
|
|
| T |
5175679 |
gtataagaagttcttacggtttgtcctgctaacacatcatcaacatcctcaagaaaccacaacctgctacgctcctcaggctccattcgtggtttattac |
5175580 |
T |
 |
| Q |
370 |
gaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttat |
426 |
Q |
| |
|
||||||||||||||||||||| || | ||||| |||||| ||||||||||| |||| |
|
|
| T |
5175579 |
aaatgatttctcttcccatatcccgcaacaaattatgcattccaagcttgtttttat |
5175523 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 280 - 409
Target Start/End: Complemental strand, 5395846 - 5395717
Alignment:
| Q |
280 |
ttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttc |
379 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||||| || | | |||||||||||| ||||| ||||| ||||| ||||||| |||||||||| |||||| |
|
|
| T |
5395846 |
ttcttacagtttgttctgataatacatccagcacgtcattattaaaccacaacctgctacgctcctcgggctcttttggtgacttctcacgaacgatttc |
5395747 |
T |
 |
| Q |
380 |
tcttcccatatctcgaagcaaatcatgcat |
409 |
Q |
| |
|
|||||||||||||| |||||||||||||| |
|
|
| T |
5395746 |
tcttcccatatctcttagcaaatcatgcat |
5395717 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 300 - 428
Target Start/End: Original strand, 5285364 - 5285492
Alignment:
| Q |
300 |
aatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttctcttcccatatctcgaagca |
399 |
Q |
| |
|
|||||||||| ||||||||| || |||||||||| ||||||| ||||||| | ||||||||| |||||||| ||| |||||||||||||||| |||| |
|
|
| T |
5285364 |
aatacatcaatcacatcctccggataccacaacctgctacgtttctcaggcctccttggtgattcctcacgaacaattcctcttcccatatctcgcagca |
5285463 |
T |
 |
| Q |
400 |
aatcatgcatgccaagcttgttcttatca |
428 |
Q |
| |
|
|| ||||||| |||||| ||||||||||| |
|
|
| T |
5285464 |
aaccatgcattccaagcatgttcttatca |
5285492 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 281 - 428
Target Start/End: Original strand, 5261346 - 5261493
Alignment:
| Q |
281 |
tcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttct |
380 |
Q |
| |
|
||||||||| |||| ||| |||||||||| ||||||||| || |||||||| ||||||| ||||||| | ||||||||| |||||||| |||||| |
|
|
| T |
5261346 |
tcttacagtttgttttgataatacatcaatcacatcctcctgatcacacaacctgctacgtttctcaggcctccttggtgattcctcacgaacaatttct |
5261445 |
T |
 |
| Q |
381 |
cttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca |
428 |
Q |
| |
|
|||||||||||||| | |||| ||||||| |||||| ||||||||||| |
|
|
| T |
5261446 |
cttcccatatctcgcaacaaaccatgcattccaagcatgttcttatca |
5261493 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 276 - 428
Target Start/End: Complemental strand, 5349184 - 5349030
Alignment:
| Q |
276 |
gaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatga |
375 |
Q |
| |
|
|||||||||||||| || ||||| || |||| |||||||||||| ||||||| ||||| | ||| ||||| |||| |||||||||| ||||||||| |
|
|
| T |
5349184 |
gaagttcttacagtttgatctgataaaacatgaagcacatcctcctgaaaccagaacctgcaacgctcctcgagctcttctggtgatttcccacgaatga |
5349085 |
T |
 |
| Q |
376 |
tttctcttcccatatctcgaagcaaatc--atgcatgccaagcttgttcttatca |
428 |
Q |
| |
|
||||||||||||||||||| | |||||| |||||| ||||| |||||||||||| |
|
|
| T |
5349084 |
tttctcttcccatatctcgcaacaaatcatatgcattccaagtttgttcttatca |
5349030 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 277 - 428
Target Start/End: Complemental strand, 5445883 - 5445732
Alignment:
| Q |
277 |
aagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgat |
376 |
Q |
| |
|
||||||||||||| ||| ||| |||||||||| ||||||||| || ||||||||||||||||| ||||||| | ||||||||| ||||| || ||| |
|
|
| T |
5445883 |
aagttcttacagtttgtcttgataatacatcaatcacatcctcctgatcccacaacctactacgtttctcaggcctccttggtgattcctcacaaacgat |
5445784 |
T |
 |
| Q |
377 |
ttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca |
428 |
Q |
| |
|
| |||||||||||||||| ||| | ||||||| |||||| ||||||||||| |
|
|
| T |
5445783 |
tcctcttcccatatctcgcagctgaccatgcattccaagcatgttcttatca |
5445732 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 312 - 426
Target Start/End: Complemental strand, 5277464 - 5277350
Alignment:
| Q |
312 |
acatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttctcttcccatatctcgaagcaaatcatgcatgc |
411 |
Q |
| |
|
||||||||| ||||||||||||| ||||| ||||||||||||||| ||| ||| | || ||||||||||||||||||||| || | ||||| |||||| | |
|
|
| T |
5277464 |
acatcctcaagaaaccacaacctgctacgctcctcaggctccattcgtggtttattacaaatgatttctcttcccatatcccgcaacaaattatgcattc |
5277365 |
T |
 |
| Q |
412 |
caagcttgttcttat |
426 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
5277364 |
caagcttgtttttat |
5277350 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 307 - 428
Target Start/End: Complemental strand, 5382424 - 5382303
Alignment:
| Q |
307 |
caagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttctcttcccatatctcgaagcaaatcatg |
406 |
Q |
| |
|
|||| ||||||||| ||||||| ||||| ||||| |||||||| ||| |||||||||| |||||||||||||||||||||||||| | | ||||||||| |
|
|
| T |
5382424 |
caaggacatcctcatgaaaccataacctgctacgctcctcaggatcctttggtgatttttcacgaatgatttctcttcccatatcccttaacaaatcatg |
5382325 |
T |
 |
| Q |
407 |
catgccaagcttgttcttatca |
428 |
Q |
| |
|
||| ||||| | ||||||||| |
|
|
| T |
5382324 |
cattccaagtgtattcttatca |
5382303 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 278 - 428
Target Start/End: Original strand, 5074931 - 5075078
Alignment:
| Q |
278 |
agttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatt |
377 |
Q |
| |
|
|||||||||| | |||||||| |||||||||| ||| |||| | |||||| || || ||||| |||||||||| | |||||| |||||||||||| |
|
|
| T |
5074931 |
agttcttacattttgttctgataatacatcaaacacgtccttatcaaaccataatctgctacgcccctcaggctc---ttctgatttttcacgaatgatt |
5075027 |
T |
 |
| Q |
378 |
tctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca |
428 |
Q |
| |
|
|||||||||||||| || |||||||||||||| |||||||||||| ||||| |
|
|
| T |
5075028 |
tctcttcccatatcacgcagcaaatcatgcattccaagcttgttcctatca |
5075078 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 294 - 409
Target Start/End: Original strand, 5183165 - 5183280
Alignment:
| Q |
294 |
tctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttctcttcccatatctc |
393 |
Q |
| |
|
||||| ||||| |||| |||||||| |||||||||||| ||||| ||||||||||| ||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
5183165 |
tctgataatacgtcaatcacatccttgttaaaccacaacctgctacgctcctcaggctcttttggtgacttctcacgaacgatttctcttcccatatctc |
5183264 |
T |
 |
| Q |
394 |
gaagcaaatcatgcat |
409 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5183265 |
ttagcaaatcatgcat |
5183280 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 270 - 421
Target Start/End: Complemental strand, 5432220 - 5432069
Alignment:
| Q |
270 |
gtataagaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcac |
369 |
Q |
| |
|
||||| |||||||||||||| ||| || |||||| || ||||||||| ||| ||||||||| ||| | |||||||| ||| |||||| || | || |
|
|
| T |
5432220 |
gtatatgaagttcttacagtttgtcttgctaatacaccatcaacatcctcaggaagccacaacctgctatgctcctcaggatcctttggtggattattac |
5432121 |
T |
 |
| Q |
370 |
gaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgtt |
421 |
Q |
| |
|
||||||||||||||||||||| || | |||||||||||| ||||||||||| |
|
|
| T |
5432120 |
aaatgatttctcttcccatatcccgcaacaaatcatgcattccaagcttgtt |
5432069 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 272 - 425
Target Start/End: Original strand, 5133096 - 5133249
Alignment:
| Q |
272 |
ataagaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacga |
371 |
Q |
| |
|
||||||||||||||| || |||| ||| | |||||||||||||||||| ||||||||| || | ||| |||||| | || ||||||| |||||| |
|
|
| T |
5133096 |
ataagaagttcttactgtttgttttgatagtacatcaagcacatcctcgtgaaaccacagtctgcaacgctcctcaaacacctccggtgattcttcacga |
5133195 |
T |
 |
| Q |
372 |
atgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttctta |
425 |
Q |
| |
|
|| ||||||||||||||||||| | |||||||||||| |||||| ||| |||| |
|
|
| T |
5133196 |
ataatttctcttcccatatctctcaacaaatcatgcattccaagcctgtcctta |
5133249 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 276 - 416
Target Start/End: Original strand, 5148154 - 5148294
Alignment:
| Q |
276 |
gaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatga |
375 |
Q |
| |
|
||||| |||||||| ||||| || || |||| |||||||||| || ||||||||| ||||| || | |||| ||| ||||||||| ||| || |||| |
|
|
| T |
5148154 |
gaagtacttacagtttgttcagataacacattaagcacatccgtactaaaccacaatctactccgattctcaacctcttttggtgattcctcgcgtatga |
5148253 |
T |
 |
| Q |
376 |
tttctcttcccatatctcgaagcaaatcatgcatgccaagc |
416 |
Q |
| |
|
|||||||| |||| ||||| | |||||||||||| |||||| |
|
|
| T |
5148254 |
tttctcttgccatgtctcgcaacaaatcatgcattccaagc |
5148294 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 360 - 428
Target Start/End: Original strand, 5691390 - 5691458
Alignment:
| Q |
360 |
gatttctcacgaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca |
428 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| | |||||||||||| | |||| ||||| ||||| |
|
|
| T |
5691390 |
gatttctcacgaacgatttctcttcccatatctcgcaacaaatcatgcattctaagcctgttcctatca |
5691458 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 280 - 428
Target Start/End: Original strand, 36215091 - 36215239
Alignment:
| Q |
280 |
ttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttc |
379 |
Q |
| |
|
|||||||||| |||||||| ||||||||| ||| |||| | |||||||||||| ||||| |||||| ||||| |||||||||||||||||||||| || |
|
|
| T |
36215091 |
ttcttacagtttgttctgataatacatcagccacgtccttattaaaccacaacctgctacgctcctcaagctcctttggtgatttctcacgaatgatctc |
36215190 |
T |
 |
| Q |
380 |
tcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca |
428 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||| ||||| ||||| |
|
|
| T |
36215191 |
tcttcccatatctcgcagcaaatcatgcattccaagcctgttcctatca |
36215239 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 303 - 428
Target Start/End: Original strand, 9890 - 10015
Alignment:
| Q |
303 |
acatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttctcttcccatatctcgaagcaaat |
402 |
Q |
| |
|
|||| |||||||||||| ||||||| ||||||||||| |||||||| ||| |||||||||| |||||||||||||| |||||||||||||| | |||| |
|
|
| T |
9890 |
acattaagcacatcctcttgaaaccataacctactacggtcctcaggatcccttggtgatttttcacgaatgatttcccttcccatatctcgtaataaat |
9989 |
T |
 |
| Q |
403 |
catgcatgccaagcttgttcttatca |
428 |
Q |
| |
|
||||||| ||||| | ||||||||| |
|
|
| T |
9990 |
catgcattccaagtgtattcttatca |
10015 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 325 - 416
Target Start/End: Complemental strand, 8876561 - 8876470
Alignment:
| Q |
325 |
accacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagc |
416 |
Q |
| |
|
|||||||||| ||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||| |
|
|
| T |
8876561 |
accacaacctgctacgctcctcaggatcctttggtgatttctcacgaatgatttctcttcccatatctgtcaacaaatcatgcattccaagc |
8876470 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 421
Target Start/End: Complemental strand, 15801970 - 15801829
Alignment:
| Q |
280 |
ttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttc |
379 |
Q |
| |
|
||||||| || ||||| | || |||||||| ||||| ||| | ||||||| | | |||||| |||||||||| ||||| | ||||||| ||||| |
|
|
| T |
15801970 |
ttcttacggtttgttcggccagtacatcaactacatcttcaaaacaccacaatcgagtacgtttctcaggctcctcaggtgaactttcacgaacaatttc |
15801871 |
T |
 |
| Q |
380 |
tcttcccatatctcgaagcaaatcatgcatgccaagcttgtt |
421 |
Q |
| |
|
||||||||| ||||| |||| | ||||||| ||||||||||| |
|
|
| T |
15801870 |
tcttcccatgtctcgtagcagagcatgcattccaagcttgtt |
15801829 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 281 - 428
Target Start/End: Original strand, 22585521 - 22585668
Alignment:
| Q |
281 |
tcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttct |
380 |
Q |
| |
|
||||||||| |||| ||| ||||| |||| ||||||||| || || ||||||| ||||| | |||||| | ||||||||| |||| ||| ||| || |
|
|
| T |
22585521 |
tcttacagtttgttttgataatacgtcaatcacatcctccggatacaacaacctgctacgcttctcaggactctttggtgattcctcaagaacaattcct |
22585620 |
T |
 |
| Q |
381 |
cttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca |
428 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||| ||||||||||| |
|
|
| T |
22585621 |
cttcccatatctcgcagcaaatcatgcattccaagcctgttcttatca |
22585668 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 277 - 421
Target Start/End: Original strand, 3326071 - 3326215
Alignment:
| Q |
277 |
aagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgat |
376 |
Q |
| |
|
|||||||||||||||||| || ||| | ||| ||||||||||| |||||||||| |||||||| | | ||||||| ||| || | |||||||| || |
|
|
| T |
3326071 |
aagttcttacagtatgttttgtcaaaatgtcatgcacatcctcatgaaaccacaatctactacgcttcccaggctcttttgcagaactttcacgaataat |
3326170 |
T |
 |
| Q |
377 |
ttctcttcccatatctcgaagcaaatcatgcatgccaagcttgtt |
421 |
Q |
| |
|
|||||||||||| |||| | |||| |||||| ||||||||||| |
|
|
| T |
3326171 |
ttctcttcccatgtctcttatcaaacaatgcattccaagcttgtt |
3326215 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 421
Target Start/End: Original strand, 7165853 - 7165899
Alignment:
| Q |
375 |
atttctcttcccatatctcgaagcaaatcatgcatgccaagcttgtt |
421 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||| ||||||||||| |
|
|
| T |
7165853 |
atttctcttcccatgtctctaagcaaatcatgcattccaagcttgtt |
7165899 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 421
Target Start/End: Complemental strand, 3313836 - 3313695
Alignment:
| Q |
280 |
ttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttc |
379 |
Q |
| |
|
||||||||||||| || | || |||||||| ||||||||| || ||||||| | |||||| | ||||||||| ||||| | ||||| | ||||| |
|
|
| T |
3313836 |
ttcttacagtatggtcggtcagtacatcaactacatcctcatgataccacaatcgactacgcttttcaggctcctcaggtgaactttcacggacaatttc |
3313737 |
T |
 |
| Q |
380 |
tcttcccatatctcgaagcaaatcatgcatgccaagcttgtt |
421 |
Q |
| |
|
|| |||||| ||||| || ||||||||||| ||||||||||| |
|
|
| T |
3313736 |
tcgtcccatgtctcgcagtaaatcatgcattccaagcttgtt |
3313695 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 3392763 - 3392815
Alignment:
| Q |
366 |
tcacgaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagctt |
418 |
Q |
| |
|
||||||| ||||| |||||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
3392763 |
tcacgaacaatttcccttcccatgtctcgtagcaaatcatgcattccaagctt |
3392815 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University