View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18166_high_5 (Length: 435)

Name: NF18166_high_5
Description: NF18166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18166_high_5
NF18166_high_5
[»] chr4 (17 HSPs)
chr4 (270-425)||(4334210-4334365)
chr4 (19-206)||(4334429-4334614)
chr4 (270-428)||(4322291-4322449)
chr4 (270-428)||(4125629-4125787)
chr4 (270-428)||(4351884-4352042)
chr4 (270-428)||(4359065-4359223)
chr4 (281-428)||(4343596-4343743)
chr4 (270-428)||(4134970-4135129)
chr4 (82-173)||(4343880-4343971)
chr4 (137-178)||(4352152-4352193)
chr4 (19-67)||(4352303-4352351)
chr4 (121-173)||(4359343-4359395)
chr4 (326-422)||(6751486-6751582)
chr4 (300-422)||(6547109-6547231)
chr4 (137-182)||(4322126-4322170)
chr4 (19-67)||(4321968-4322016)
chr4 (19-67)||(4344025-4344072)
[»] chr6 (22 HSPs)
chr6 (276-428)||(5104067-5104219)
chr6 (276-428)||(5094696-5094848)
chr6 (276-425)||(5158696-5158845)
chr6 (280-424)||(5342353-5342497)
chr6 (276-428)||(5369115-5369267)
chr6 (276-428)||(5424408-5424560)
chr6 (270-428)||(5355805-5355963)
chr6 (276-424)||(5068269-5068417)
chr6 (270-426)||(5175523-5175679)
chr6 (280-409)||(5395717-5395846)
chr6 (300-428)||(5285364-5285492)
chr6 (281-428)||(5261346-5261493)
chr6 (276-428)||(5349030-5349184)
chr6 (277-428)||(5445732-5445883)
chr6 (312-426)||(5277350-5277464)
chr6 (307-428)||(5382303-5382424)
chr6 (278-428)||(5074931-5075078)
chr6 (294-409)||(5183165-5183280)
chr6 (270-421)||(5432069-5432220)
chr6 (272-425)||(5133096-5133249)
chr6 (276-416)||(5148154-5148294)
chr6 (360-428)||(5691390-5691458)
[»] chr7 (1 HSPs)
chr7 (280-428)||(36215091-36215239)
[»] scaffold0294 (1 HSPs)
scaffold0294 (303-428)||(9890-10015)
[»] chr5 (2 HSPs)
chr5 (325-416)||(8876470-8876561)
chr5 (280-421)||(15801829-15801970)
[»] chr2 (1 HSPs)
chr2 (281-428)||(22585521-22585668)
[»] chr8 (4 HSPs)
chr8 (277-421)||(3326071-3326215)
chr8 (375-421)||(7165853-7165899)
chr8 (280-421)||(3313695-3313836)
chr8 (366-418)||(3392763-3392815)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 270 - 425
Target Start/End: Complemental strand, 4334365 - 4334210
Alignment:
270 gtataagaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcac 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
4334365 gtataagaagttcttacagtatgttctgacaatacatcaagcacatcctcatgaaaccacaacctactacgttcctcaggctccattggtgatttctcac 4334266  T
370 gaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttctta 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4334265 gaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttctta 4334210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 4334614 - 4334429
Alignment:
19 tttgttccctgtgaaatataaaggaccaaaagttaaacatgctatagagatnnnnnnnnnntgttgtaatgataccaataatttgttactaggagcacag 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||    
4334614 tttgttccctgtgaaatataaaggaccaaaagttaaacatgctatagagataaaaaaaa--tgttgtaatgataccaataatttgttactaggagcacag 4334517  T
119 atgcacaaaatgattaataaccaaactaatattcaaagcttttgcgctaacaacagcacaaatgtattttgcttttaaagtttgagat 206  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4334516 aagcacaaaatgattaataaccaaactaatattcaaagcttttgcgctaacaacagcacaaatgtattttgcttttaaagtttgagat 4334429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 270 - 428
Target Start/End: Original strand, 4322291 - 4322449
Alignment:
270 gtataagaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcac 369  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
4322291 gtatatgaagttcttacagtatgttctgacaatacatcaagcacatcatcatgaaaccacaacctactacgttcctcaggctccattggtgatttctcac 4322390  T
370 gaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca 428  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
4322391 gaatgatttcccttcccatatctcgcagcaaatcatgcatgccaagcttgttcttatca 4322449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 270 - 428
Target Start/End: Original strand, 4125629 - 4125787
Alignment:
270 gtataagaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcac 369  Q
    ||||| ||| ||||||| |||||||||||||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
4125629 gtatatgaaattcttaccgtatgttctgacaatatatcaatcacatcctcatgataccacaacctactacgttcctcaggctccattggtgatttctcac 4125728  T
370 gaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca 428  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
4125729 gaatgatttctcttcccatatctcgcagcaaatcatgcatgccaagcttgttcttatca 4125787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 270 - 428
Target Start/End: Complemental strand, 4352042 - 4351884
Alignment:
270 gtataagaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcac 369  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||| |  |||||||||||||||||||||||||||||||| |||||||||||||||    
4352042 gtatatgaagttcttacagtatgttttgacaatacatcaagcacatccccgtgaaaccacaacctactacgttcctcaggctcctttggtgatttctcac 4351943  T
370 gaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca 428  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
4351942 gaatgatttctcttcccatatctcgcagcaaatcatgcatgccaagcttgtttttatca 4351884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 270 - 428
Target Start/End: Complemental strand, 4359223 - 4359065
Alignment:
270 gtataagaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcac 369  Q
    ||||| ||||||||||| ||||||||| |||| ||||||| |||||||||| ||||||||| ||||||| |||||||||||||| |||||||||||||||    
4359223 gtatatgaagttcttacggtatgttctaacaagacatcaatcacatcctcatgaaaccacagcctactatgttcctcaggctcctttggtgatttctcac 4359124  T
370 gaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca 428  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
4359123 gaatgatttctcttcccatatctcggagcaaatcatgcatgccaagcttgttcttatca 4359065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 281 - 428
Target Start/End: Complemental strand, 4343743 - 4343596
Alignment:
281 tcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttct 380  Q
    |||||||||||||||| |||| ||||||||||| || ||| ||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||    
4343743 tcttacagtatgttctaacaagacatcaagcacgtcttcatgaaaccacaacctactatgttcctcaggctcctttggcgatttctcacgaatgatttct 4343644  T
381 cttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca 428  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
4343643 cttcccatatctcgcagcaaatcatgcatgccaagcttgttcttatca 4343596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 270 - 428
Target Start/End: Original strand, 4134970 - 4135129
Alignment:
270 gtataagaagttcttacagtatgttctgacaa-tacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctca 368  Q
    |||||||| ||||||||| | |||| |||||| ||||||| | ||||||||| ||||||| ||||||||||| | |||  | | | ||||||||||||      
4134970 gtataagacgttcttacattttgttatgacaaatacatcatgaacatcctcatgaaaccataacctactacgcttctcgagtttctttggtgatttctgt 4135069  T
369 cgaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca 428  Q
    || ||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||||    
4135070 cggatgatctctcttcccatatctcgtagcaaatcatgcattccaagcttgtttttatca 4135129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 173
Target Start/End: Complemental strand, 4343971 - 4343880
Alignment:
82 ttgtaatgataccaataatttgttactaggagcacagatgcacaaaatgattaataaccaaactaatattcaaagcttttgcgctaacaaca 173  Q
    ||||||||| |||||| |||||||||||||||    || ||||||| ||||| | ||||||||||||||||||| ||| || ||||||||||    
4343971 ttgtaatgaaaccaatcatttgttactaggagacgggaagcacaaactgattcacaaccaaactaatattcaaaacttctgtgctaacaaca 4343880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 4352193 - 4352152
Alignment:
137 aaccaaactaatattcaaagcttttgcgctaacaacagcaca 178  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
4352193 aaccaaactaatattgaaagcttttgcgctaacaacagcaca 4352152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 4352351 - 4352303
Alignment:
19 tttgttccctgtgaaatataaaggaccaaaagttaaacatgctatagag 67  Q
    ||||||||||| ||||||||||||||||||||| ||||||  |||||||    
4352351 tttgttccctgagaaatataaaggaccaaaagtaaaacatcttatagag 4352303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 4359395 - 4359343
Alignment:
121 gcacaaaatgattaataaccaaactaatattcaaagcttttgcgctaacaaca 173  Q
    ||||||||||||| | ||||||||||||||||||| ||| || ||||||||||    
4359395 gcacaaaatgattcacaaccaaactaatattcaaaacttctgtgctaacaaca 4359343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 422
Target Start/End: Complemental strand, 6751582 - 6751486
Alignment:
326 ccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttc 422  Q
    |||||||||||| || | |||||| |||| |||||||| ||||  ||| |||| ||||||||| ||||  | |||||||||||| | ||||||||||    
6751582 ccacaacctactgcgattctcaggatccagtggtgattcctcataaattatttgtcttcccatgtctctcaacaaatcatgcattctaagcttgttc 6751486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 422
Target Start/End: Original strand, 6547109 - 6547231
Alignment:
300 aatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttctcttcccatatctcgaagca 399  Q
    |||||||||||| ||||||||||   |||||||||||| || | ||| || || | ||| |||| ||||  ||| |||| ||||||||| ||||  | ||    
6547109 aatacatcaagcgcatcctcacggcgccacaacctactgcggttctccggatcaaatggcgattcctcataaattatttgtcttcccatgtctctcaaca 6547208  T
400 aatcatgcatgccaagcttgttc 422  Q
    |||||||||| | ||||||||||    
6547209 aatcatgcattctaagcttgttc 6547231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 4322126 - 4322170
Alignment:
137 aaccaaactaatattcaaagcttttgcgctaacaacagcacaaatg 182  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||||    
4322126 aaccaaactaa-attcaaagcttttgtgctaacaacagaacaaatg 4322170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 4321968 - 4322016
Alignment:
19 tttgttccctgtgaaatataaaggaccaaaagttaaacatgctatagag 67  Q
    |||||||||| ||||||||||||||||| || | |||||||||| ||||    
4321968 tttgttccctatgaaatataaaggaccagaattaaaacatgctacagag 4322016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 4344072 - 4344025
Alignment:
19 tttgttccctgtgaaatataaaggaccaaaagttaaacatgctatagag 67  Q
    |||||||||||||||||||||| |||| ||||| |||||| ||||||||    
4344072 tttgttccctgtgaaatataaaagacc-aaagtaaaacatcctatagag 4344025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 4e-45; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 276 - 428
Target Start/End: Original strand, 5104067 - 5104219
Alignment:
276 gaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatga 375  Q
    ||||||||||| ||||||||||||||||||| ||||||||| ||| ||||||||||||| | ||| |||||  |||||  ||||||||||||||||||||    
5104067 gaagttcttaccgtatgttctgacaatacatgaagcacatcgtcatgaaaccacaacctgcaacgctcctcgagctcctctggtgatttctcacgaatga 5104166  T
376 tttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca 428  Q
    ||||||||||||||||||| | |||||||||||| ||||| ||||||||||||    
5104167 tttctcttcccatatctcgcaacaaatcatgcattccaagtttgttcttatca 5104219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 276 - 428
Target Start/End: Complemental strand, 5094848 - 5094696
Alignment:
276 gaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatga 375  Q
    |||||||||||||| |||||||| ||||||| ||||||||| ||| ||||||||||||| | ||| |||||  |||||  ||||||||||||||||||||    
5094848 gaagttcttacagtttgttctgataatacatgaagcacatcatcatgaaaccacaacctgcaacgctcctcgagctcctctggtgatttctcacgaatga 5094749  T
376 tttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca 428  Q
    ||||||||||||||||||| | |||||||||||| ||||| ||||||||||||    
5094748 tttctcttcccatatctcgcaacaaatcatgcattccaagtttgttcttatca 5094696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 276 - 425
Target Start/End: Original strand, 5158696 - 5158845
Alignment:
276 gaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatga 375  Q
    |||||||||||||| |||||||| ||||||| ||||||||| ||| ||||||||||||| | ||| |||||   ||||  ||||||||||||||||||||    
5158696 gaagttcttacagtttgttctgataatacatgaagcacatcgtcatgaaaccacaacctgcaacgctcctcgatctcctctggtgatttctcacgaatga 5158795  T
376 tttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttctta 425  Q
    ||||||||||||||||||| | |||||||||||| ||||| |||||||||    
5158796 tttctcttcccatatctcgcaacaaatcatgcattccaagtttgttctta 5158845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 280 - 424
Target Start/End: Complemental strand, 5342497 - 5342353
Alignment:
280 ttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttc 379  Q
    ||||||| || |||||||| ||||||||||||||||||||   ||| |||||||| ||||| ||| || ||||| |||||||||||||||||| ||||||    
5342497 ttcttacggtttgttctgataatacatcaagcacatcctccttaaagcacaacctgctacgctccccaagctcctttggtgatttctcacgaacgatttc 5342398  T
380 tcttcccatatctcgaagcaaatcatgcatgccaagcttgttctt 424  Q
    ||||||||||||||| |||||||| ||||| ||||| ||||||||    
5342397 tcttcccatatctcgcagcaaatcgtgcattccaagtttgttctt 5342353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 276 - 428
Target Start/End: Complemental strand, 5369267 - 5369115
Alignment:
276 gaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatga 375  Q
    |||| ||||||||| || ||||| ||||||| ||||||||||||| ||||||||||||| | ||| |||||  ||||   |||||||||| |||||||||    
5369267 gaagatcttacagtttgatctgataatacatgaagcacatcctcatgaaaccacaacctgcaacgctcctcgagctcttctggtgatttcccacgaatga 5369168  T
376 tttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca 428  Q
    ||||||||||||||||||| | |||||||||||| ||||| ||||||||||||    
5369167 tttctcttcccatatctcgcaacaaatcatgcattccaagtttgttcttatca 5369115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 276 - 428
Target Start/End: Complemental strand, 5424560 - 5424408
Alignment:
276 gaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatga 375  Q
    |||||||||||||| || ||||| ||||||| ||||||||||||| ||||||||||||| | ||| |||||  ||||   |||||||||| |||||||||    
5424560 gaagttcttacagtttgatctgataatacatgaagcacatcctcatgaaaccacaacctgcaacgctcctcgagctcttctggtgatttcccacgaatga 5424461  T
376 tttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca 428  Q
    ||||||||||||||||||| | |||||||||||| ||||| ||||| ||||||    
5424460 tttctcttcccatatctcgcaacaaatcatgcattccaagtttgttattatca 5424408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 270 - 428
Target Start/End: Original strand, 5355805 - 5355963
Alignment:
270 gtataagaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcac 369  Q
    ||||| |||||||||||||  || ||||| || |||||||||||||| ||| ||| |||||| || |||||| ||||||| |||   |||||||||||||    
5355805 gtatatgaagttcttacagattgatctgataaaacatcaagcacatcatcatgaagccacaatctgctacgtgcctcagggtcctccggtgatttctcac 5355904  T
370 gaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca 428  Q
    ||| || |||||||||||||||||| |||||||||||||| | |||| | |||||||||    
5355905 gaacgacttctcttcccatatctcgtagcaaatcatgcattctaagcctattcttatca 5355963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 276 - 424
Target Start/End: Original strand, 5068269 - 5068417
Alignment:
276 gaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatga 375  Q
    |||||||||||||| |||||||| ||||| | |||| |||||||  ||||||||||||| | ||| |||||  ||||   |||||||||| |||||| ||    
5068269 gaagttcttacagtttgttctgataatacttgaagcgcatcctcctgaaaccacaacctgcaacgctcctcgagctcttctggtgatttcccacgaacga 5068368  T
376 tttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttctt 424  Q
    ||||||||||||||||||| | |||||||||||| ||||| ||||||||    
5068369 tttctcttcccatatctcgcaacaaatcatgcattccaagtttgttctt 5068417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 270 - 426
Target Start/End: Complemental strand, 5175679 - 5175523
Alignment:
270 gtataagaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcac 369  Q
    ||||||||||||||||| || ||| |||  || ||||||   ||||||||| ||||||||||||| ||||| ||||||||||||||| ||| ||| | ||    
5175679 gtataagaagttcttacggtttgtcctgctaacacatcatcaacatcctcaagaaaccacaacctgctacgctcctcaggctccattcgtggtttattac 5175580  T
370 gaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttat 426  Q
     ||||||||||||||||||||| || | ||||| |||||| ||||||||||| ||||    
5175579 aaatgatttctcttcccatatcccgcaacaaattatgcattccaagcttgtttttat 5175523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 280 - 409
Target Start/End: Complemental strand, 5395846 - 5395717
Alignment:
280 ttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttc 379  Q
    |||||||||| |||||||| |||||||| ||||| || | |  |||||||||||| ||||| ||||| |||||  ||||||| |||||||||| ||||||    
5395846 ttcttacagtttgttctgataatacatccagcacgtcattattaaaccacaacctgctacgctcctcgggctcttttggtgacttctcacgaacgatttc 5395747  T
380 tcttcccatatctcgaagcaaatcatgcat 409  Q
    ||||||||||||||  ||||||||||||||    
5395746 tcttcccatatctcttagcaaatcatgcat 5395717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 300 - 428
Target Start/End: Original strand, 5285364 - 5285492
Alignment:
300 aatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttctcttcccatatctcgaagca 399  Q
    |||||||||| |||||||||  || |||||||||| ||||||| |||||||  | ||||||||| ||||||||  ||| |||||||||||||||| ||||    
5285364 aatacatcaatcacatcctccggataccacaacctgctacgtttctcaggcctccttggtgattcctcacgaacaattcctcttcccatatctcgcagca 5285463  T
400 aatcatgcatgccaagcttgttcttatca 428  Q
    || ||||||| |||||| |||||||||||    
5285464 aaccatgcattccaagcatgttcttatca 5285492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 281 - 428
Target Start/End: Original strand, 5261346 - 5261493
Alignment:
281 tcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttct 380  Q
    ||||||||| |||| ||| |||||||||| |||||||||  ||   |||||||| ||||||| |||||||  | ||||||||| ||||||||  ||||||    
5261346 tcttacagtttgttttgataatacatcaatcacatcctcctgatcacacaacctgctacgtttctcaggcctccttggtgattcctcacgaacaatttct 5261445  T
381 cttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca 428  Q
    |||||||||||||| | |||| ||||||| |||||| |||||||||||    
5261446 cttcccatatctcgcaacaaaccatgcattccaagcatgttcttatca 5261493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 276 - 428
Target Start/End: Complemental strand, 5349184 - 5349030
Alignment:
276 gaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatga 375  Q
    |||||||||||||| || ||||| || |||| ||||||||||||  ||||||| ||||| | ||| |||||  ||||   |||||||||| |||||||||    
5349184 gaagttcttacagtttgatctgataaaacatgaagcacatcctcctgaaaccagaacctgcaacgctcctcgagctcttctggtgatttcccacgaatga 5349085  T
376 tttctcttcccatatctcgaagcaaatc--atgcatgccaagcttgttcttatca 428  Q
    ||||||||||||||||||| | ||||||  |||||| ||||| ||||||||||||    
5349084 tttctcttcccatatctcgcaacaaatcatatgcattccaagtttgttcttatca 5349030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 277 - 428
Target Start/End: Complemental strand, 5445883 - 5445732
Alignment:
277 aagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgat 376  Q
    ||||||||||||| |||  ||| |||||||||| |||||||||  ||  ||||||||||||||||| |||||||  | ||||||||| ||||| || |||    
5445883 aagttcttacagtttgtcttgataatacatcaatcacatcctcctgatcccacaacctactacgtttctcaggcctccttggtgattcctcacaaacgat 5445784  T
377 ttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca 428  Q
    | |||||||||||||||| |||  | ||||||| |||||| |||||||||||    
5445783 tcctcttcccatatctcgcagctgaccatgcattccaagcatgttcttatca 5445732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 312 - 426
Target Start/End: Complemental strand, 5277464 - 5277350
Alignment:
312 acatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttctcttcccatatctcgaagcaaatcatgcatgc 411  Q
    ||||||||| ||||||||||||| ||||| ||||||||||||||| ||| ||| | || ||||||||||||||||||||| || | ||||| |||||| |    
5277464 acatcctcaagaaaccacaacctgctacgctcctcaggctccattcgtggtttattacaaatgatttctcttcccatatcccgcaacaaattatgcattc 5277365  T
412 caagcttgttcttat 426  Q
    |||||||||| ||||    
5277364 caagcttgtttttat 5277350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 307 - 428
Target Start/End: Complemental strand, 5382424 - 5382303
Alignment:
307 caagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttctcttcccatatctcgaagcaaatcatg 406  Q
    |||| ||||||||| ||||||| ||||| ||||| |||||||| ||| |||||||||| |||||||||||||||||||||||||| |  | |||||||||    
5382424 caaggacatcctcatgaaaccataacctgctacgctcctcaggatcctttggtgatttttcacgaatgatttctcttcccatatcccttaacaaatcatg 5382325  T
407 catgccaagcttgttcttatca 428  Q
    ||| |||||  | |||||||||    
5382324 cattccaagtgtattcttatca 5382303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 278 - 428
Target Start/End: Original strand, 5074931 - 5075078
Alignment:
278 agttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatt 377  Q
    |||||||||| | |||||||| |||||||||| ||| |||| |  |||||| || || |||||  ||||||||||   |  |||||| ||||||||||||    
5074931 agttcttacattttgttctgataatacatcaaacacgtccttatcaaaccataatctgctacgcccctcaggctc---ttctgatttttcacgaatgatt 5075027  T
378 tctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca 428  Q
    |||||||||||||| || |||||||||||||| |||||||||||| |||||    
5075028 tctcttcccatatcacgcagcaaatcatgcattccaagcttgttcctatca 5075078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 294 - 409
Target Start/End: Original strand, 5183165 - 5183280
Alignment:
294 tctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttctcttcccatatctc 393  Q
    ||||| ||||| |||| ||||||||    |||||||||||| ||||| |||||||||||  ||||||| |||||||||| ||||||||||||||||||||    
5183165 tctgataatacgtcaatcacatccttgttaaaccacaacctgctacgctcctcaggctcttttggtgacttctcacgaacgatttctcttcccatatctc 5183264  T
394 gaagcaaatcatgcat 409  Q
      ||||||||||||||    
5183265 ttagcaaatcatgcat 5183280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 270 - 421
Target Start/End: Complemental strand, 5432220 - 5432069
Alignment:
270 gtataagaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcac 369  Q
    ||||| |||||||||||||| |||  ||  |||||| ||   ||||||||| ||| ||||||||| ||| | |||||||| ||| ||||||  || | ||    
5432220 gtatatgaagttcttacagtttgtcttgctaatacaccatcaacatcctcaggaagccacaacctgctatgctcctcaggatcctttggtggattattac 5432121  T
370 gaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgtt 421  Q
     ||||||||||||||||||||| || | |||||||||||| |||||||||||    
5432120 aaatgatttctcttcccatatcccgcaacaaatcatgcattccaagcttgtt 5432069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 272 - 425
Target Start/End: Original strand, 5133096 - 5133249
Alignment:
272 ataagaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacga 371  Q
    ||||||||||||||| || |||| ||| | ||||||||||||||||||  |||||||||  || | ||| ||||||  | ||   |||||||  ||||||    
5133096 ataagaagttcttactgtttgttttgatagtacatcaagcacatcctcgtgaaaccacagtctgcaacgctcctcaaacacctccggtgattcttcacga 5133195  T
372 atgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttctta 425  Q
    || |||||||||||||||||||  | |||||||||||| |||||| ||| ||||    
5133196 ataatttctcttcccatatctctcaacaaatcatgcattccaagcctgtcctta 5133249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 276 - 416
Target Start/End: Original strand, 5148154 - 5148294
Alignment:
276 gaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatga 375  Q
    ||||| |||||||| ||||| || || |||| ||||||||||  || ||||||||| ||||| || | ||||  |||  ||||||||| ||| || ||||    
5148154 gaagtacttacagtttgttcagataacacattaagcacatccgtactaaaccacaatctactccgattctcaacctcttttggtgattcctcgcgtatga 5148253  T
376 tttctcttcccatatctcgaagcaaatcatgcatgccaagc 416  Q
    |||||||| |||| ||||| | |||||||||||| ||||||    
5148254 tttctcttgccatgtctcgcaacaaatcatgcattccaagc 5148294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 360 - 428
Target Start/End: Original strand, 5691390 - 5691458
Alignment:
360 gatttctcacgaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca 428  Q
    ||||||||||||| ||||||||||||||||||||| | |||||||||||| | |||| ||||| |||||    
5691390 gatttctcacgaacgatttctcttcccatatctcgcaacaaatcatgcattctaagcctgttcctatca 5691458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 280 - 428
Target Start/End: Original strand, 36215091 - 36215239
Alignment:
280 ttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttc 379  Q
    |||||||||| |||||||| |||||||||  ||| |||| |  |||||||||||| ||||| |||||| ||||| |||||||||||||||||||||| ||    
36215091 ttcttacagtttgttctgataatacatcagccacgtccttattaaaccacaacctgctacgctcctcaagctcctttggtgatttctcacgaatgatctc 36215190  T
380 tcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca 428  Q
    ||||||||||||||| |||||||||||||| |||||| ||||| |||||    
36215191 tcttcccatatctcgcagcaaatcatgcattccaagcctgttcctatca 36215239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 303 - 428
Target Start/End: Original strand, 9890 - 10015
Alignment:
303 acatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttctcttcccatatctcgaagcaaat 402  Q
    |||| ||||||||||||  ||||||| ||||||||||| |||||||| ||| |||||||||| |||||||||||||| |||||||||||||| |  ||||    
9890 acattaagcacatcctcttgaaaccataacctactacggtcctcaggatcccttggtgatttttcacgaatgatttcccttcccatatctcgtaataaat 9989  T
403 catgcatgccaagcttgttcttatca 428  Q
    ||||||| |||||  | |||||||||    
9990 catgcattccaagtgtattcttatca 10015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 325 - 416
Target Start/End: Complemental strand, 8876561 - 8876470
Alignment:
325 accacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagc 416  Q
    |||||||||| ||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||   | |||||||||||| ||||||    
8876561 accacaacctgctacgctcctcaggatcctttggtgatttctcacgaatgatttctcttcccatatctgtcaacaaatcatgcattccaagc 8876470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 421
Target Start/End: Complemental strand, 15801970 - 15801829
Alignment:
280 ttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttc 379  Q
    ||||||| || ||||| | || ||||||||  ||||| |||  | ||||||| | | |||||| ||||||||||   |||||  | |||||||  |||||    
15801970 ttcttacggtttgttcggccagtacatcaactacatcttcaaaacaccacaatcgagtacgtttctcaggctcctcaggtgaactttcacgaacaatttc 15801871  T
380 tcttcccatatctcgaagcaaatcatgcatgccaagcttgtt 421  Q
    ||||||||| ||||| |||| | ||||||| |||||||||||    
15801870 tcttcccatgtctcgtagcagagcatgcattccaagcttgtt 15801829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 281 - 428
Target Start/End: Original strand, 22585521 - 22585668
Alignment:
281 tcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttct 380  Q
    ||||||||| |||| ||| ||||| |||| |||||||||  || || ||||||| ||||| | ||||||   | ||||||||| |||| |||  ||| ||    
22585521 tcttacagtttgttttgataatacgtcaatcacatcctccggatacaacaacctgctacgcttctcaggactctttggtgattcctcaagaacaattcct 22585620  T
381 cttcccatatctcgaagcaaatcatgcatgccaagcttgttcttatca 428  Q
    |||||||||||||| |||||||||||||| |||||| |||||||||||    
22585621 cttcccatatctcgcagcaaatcatgcattccaagcctgttcttatca 22585668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 277 - 421
Target Start/End: Original strand, 3326071 - 3326215
Alignment:
277 aagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgat 376  Q
    |||||||||||||||||| || ||| |  ||| ||||||||||| |||||||||| |||||||| | | |||||||  |||  ||  | |||||||| ||    
3326071 aagttcttacagtatgttttgtcaaaatgtcatgcacatcctcatgaaaccacaatctactacgcttcccaggctcttttgcagaactttcacgaataat 3326170  T
377 ttctcttcccatatctcgaagcaaatcatgcatgccaagcttgtt 421  Q
    |||||||||||| ||||  | ||||  |||||| |||||||||||    
3326171 ttctcttcccatgtctcttatcaaacaatgcattccaagcttgtt 3326215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 421
Target Start/End: Original strand, 7165853 - 7165899
Alignment:
375 atttctcttcccatatctcgaagcaaatcatgcatgccaagcttgtt 421  Q
    |||||||||||||| |||| ||||||||||||||| |||||||||||    
7165853 atttctcttcccatgtctctaagcaaatcatgcattccaagcttgtt 7165899  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 421
Target Start/End: Complemental strand, 3313836 - 3313695
Alignment:
280 ttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttc 379  Q
    ||||||||||||| || | || ||||||||  ||||||||| || ||||||| | |||||| |  |||||||||   |||||  | ||||| |  |||||    
3313836 ttcttacagtatggtcggtcagtacatcaactacatcctcatgataccacaatcgactacgcttttcaggctcctcaggtgaactttcacggacaatttc 3313737  T
380 tcttcccatatctcgaagcaaatcatgcatgccaagcttgtt 421  Q
    || |||||| ||||| || ||||||||||| |||||||||||    
3313736 tcgtcccatgtctcgcagtaaatcatgcattccaagcttgtt 3313695  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 3392763 - 3392815
Alignment:
366 tcacgaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagctt 418  Q
    |||||||  ||||| |||||||| ||||| |||||||||||||| ||||||||    
3392763 tcacgaacaatttcccttcccatgtctcgtagcaaatcatgcattccaagctt 3392815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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