View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18166_high_6 (Length: 413)
Name: NF18166_high_6
Description: NF18166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18166_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Original strand, 46292717 - 46293099
Alignment:
| Q |
18 |
aggaatacgataacgaagtaactttataagtgatattgtgatctgttgagagcaagtaataataataggcgtcgctgacattatactttttagacaaatg |
117 |
Q |
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| T |
46292717 |
aggaatacgataacgaagtaactttataagtgatattgtgatctgttgagagcaagtaat---aataggcgtcgctgacattatactttttagacaaatg |
46292813 |
T |
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| Q |
118 |
taaattccatgaccgtatgtctttcacaccatcctgcaaaataatataatttaacaatacactgcattcccacacttgttcttcatcccaactcaataac |
217 |
Q |
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||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46292814 |
taaattccatgaccgaatgtctttcacaccagcctgcaaaataatataatttaacaatacactgcattcccacacttgttcttcatcccaactcaataac |
46292913 |
T |
|
| Q |
218 |
cgcctcttccacttctacgcctccccactctcgctccaacttaaaaatttcatctcaacaaccatcgacaactaattttcaactaagtctaaaagcatgt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46292914 |
cgcctcttccacttctacgcctccccactctcgctccaacttaaaaacttcatctcaacaaccatcgacaactaattttcaactaagtctaaaagcatgt |
46293013 |
T |
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| Q |
318 |
tgaacctaacctttaaagtacctcctttaagccaaggatcccaccaaaataacatggaagttcagtcacccacctcttgacctatg |
403 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
46293014 |
tgaacctaacctttaaagcacctcctttaagccaaggatcccaccaaaataacatggaagatctgtcacccacctcttgacctatg |
46293099 |
T |
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