View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18166_low_11 (Length: 311)
Name: NF18166_low_11
Description: NF18166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18166_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 1618884 - 1619127
Alignment:
| Q |
16 |
aagaaaattgatgagaccagacagactatattctaattagatgttaacaggtaaattattcaccaaatatgaacacttctatcatatcaaccaaaacagt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1618884 |
aagaaaattgatgagaccagacagactatattctaattagatgttaataggtaaattattcaccaaatatgaacacttctatcatatcaaccaaaacagt |
1618983 |
T |
|
| Q |
116 |
tttaaaaatctcatcaaaaaatagtctcttatttgttattttcaaataagtaaaaccaatcaatgaaatagatattcaatgaaacaatgaaaattattac |
215 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
1618984 |
tttaaaaagctcatcaaaaaatagtctcttatttgttattttcaaataagtaaaaccaatcaatgatatagatattcaatgacacaatgaaaattattac |
1619083 |
T |
|
| Q |
216 |
tttcattttcacatattgaaaatccaaacacatagcatcagcaa |
259 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1619084 |
tttcattttcacatattgaaaatccaaacacatagcatcagcaa |
1619127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 32573583 - 32573826
Alignment:
| Q |
16 |
aagaaaattgatgagaccagacagactatattctaattagatgttaacaggtaaattattcaccaaatatgaacacttctatcatatcaaccaaaacagt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32573583 |
aagaaaattgatgagaccagacagactatattctaattagatgttaataggtaaattattcaccaaatatgaacacttctatcatatcaaccaaaacagt |
32573682 |
T |
|
| Q |
116 |
tttaaaaatctcatcaaaaaatagtctcttatttgttattttcaaataagtaaaaccaatcaatgaaatagatattcaatgaaacaatgaaaattattac |
215 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||| |
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| T |
32573683 |
tttaaaaagctcataaaaaaatagtctcttatttgttattttcaaataagtaaaaccaatctatgatatagatattcaatgacacaatgaaaattattac |
32573782 |
T |
|
| Q |
216 |
tttcattttcacatattgaaaatccaaacacatagcatcagcaa |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32573783 |
tttcattttcacatattgaaaatccaaacacatagcatcagcaa |
32573826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 32781701 - 32781491
Alignment:
| Q |
16 |
aagaaaattgatgagaccagacagactatattctaattagatgttaacaggtaaattattcaccaaatatgaacacttctatcatatcaaccaaaacagt |
115 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||| |
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| T |
32781701 |
aagaaaaatgatgagaccagacagactatattctaattagatgttaacaggtaaattattcaccaaatatgaacaattctatcatatcaaccacaagagt |
32781602 |
T |
|
| Q |
116 |
tttaaaaatctcatcaaaaaatagtctcttatttgttattttcaaataagtaaaaccaatcaatgaaatagatattcaatgaaacaatgaaaattattac |
215 |
Q |
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|| || |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32781601 |
ctttaattactcatcaaaaaatagtctcttagttgttattttcaaataagaaaaaccaatcaatgaaatagatattcaatgacacaatgaaaattattac |
32781502 |
T |
|
| Q |
216 |
tttcattttcac |
227 |
Q |
| |
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||||||||||| |
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|
| T |
32781501 |
-ttcattttcac |
32781491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 28284883 - 28284828
Alignment:
| Q |
45 |
attctaattagatgttaacaggtaaattattcaccaaatatgaacacttctatcata |
101 |
Q |
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||||| ||||||||||| |||||||||| ||| |||||||||| |||||||||||| |
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|
| T |
28284883 |
attctgattagatgttag-aggtaaattaatcatcaaatatgaatacttctatcata |
28284828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 131 - 227
Target Start/End: Original strand, 45337462 - 45337558
Alignment:
| Q |
131 |
aaaaaatagtctcttatttgttattttcaaataagtaaaaccaatcaatgaaatagatattcaatgaaacaatgaaaattattactttcattttcac |
227 |
Q |
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|||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||| || | ||||||||||||||||||||||||||| |
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| T |
45337462 |
aaaaaatagtctcttaattgttattttcaaataagaaaaaccaatcaatgagatagatattcagcgacaaaatgaaaattattactttcattttcac |
45337558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 45337242 - 45337327
Alignment:
| Q |
16 |
aagaaaattgatgagaccagacagactatattctaattagatgttaacaggtaaattattcaccaaatatgaacacttctatcata |
101 |
Q |
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||||||| ||||||| ||||| | ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
45337242 |
aagaaaaatgatgaggccagagaaactatattctaattagatgttaagaggtaaatcattcaccaaatatgaacacttctatcata |
45337327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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