View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18166_low_14 (Length: 252)

Name: NF18166_low_14
Description: NF18166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18166_low_14
NF18166_low_14
[»] chr6 (11 HSPs)
chr6 (10-133)||(13761923-13762047)
chr6 (131-173)||(30341421-30341463)
chr6 (132-173)||(15990103-15990144)
chr6 (134-173)||(15508085-15508124)
chr6 (189-238)||(11427673-11427722)
chr6 (131-176)||(31110817-31110862)
chr6 (141-238)||(32869685-32869782)
chr6 (134-173)||(4231548-4231587)
chr6 (139-238)||(22880654-22880753)
chr6 (129-171)||(6209528-6209570)
chr6 (189-238)||(23128123-23128172)
[»] chr7 (19 HSPs)
chr7 (125-173)||(38044188-38044236)
chr7 (132-238)||(8080379-8080485)
chr7 (133-173)||(22343360-22343400)
chr7 (133-173)||(41915740-41915780)
chr7 (131-238)||(38837214-38837321)
chr7 (132-238)||(7389387-7389493)
chr7 (133-238)||(3434561-3434666)
chr7 (189-238)||(3784050-3784099)
chr7 (131-172)||(7727903-7727944)
chr7 (189-238)||(19329897-19329946)
chr7 (130-238)||(40957703-40957811)
chr7 (134-176)||(8238212-8238255)
chr7 (134-173)||(40846174-40846213)
chr7 (189-244)||(41423737-41423792)
chr7 (189-238)||(3694422-3694471)
chr7 (131-176)||(11044185-11044230)
chr7 (131-172)||(18207177-18207218)
chr7 (189-238)||(19436183-19436232)
chr7 (189-238)||(38267095-38267144)
[»] chr3 (14 HSPs)
chr3 (131-238)||(49607411-49607518)
chr3 (134-175)||(45058611-45058652)
chr3 (134-238)||(53982011-53982115)
chr3 (134-244)||(8076393-8076503)
chr3 (132-176)||(11095411-11095455)
chr3 (132-176)||(33118909-33118953)
chr3 (134-238)||(33644200-33644304)
chr3 (138-238)||(52629304-52629404)
chr3 (139-238)||(48587087-48587186)
chr3 (134-176)||(26141590-26141632)
chr3 (132-237)||(27714888-27714993)
chr3 (133-173)||(36331439-36331479)
chr3 (137-173)||(42823114-42823150)
chr3 (132-172)||(54868957-54868997)
[»] chr1 (16 HSPs)
chr1 (131-238)||(38595151-38595258)
chr1 (129-226)||(2581910-2582007)
chr1 (134-238)||(3000319-3000423)
chr1 (134-173)||(50591061-50591100)
chr1 (133-244)||(51898673-51898784)
chr1 (131-172)||(5959062-5959103)
chr1 (189-238)||(27564731-27564780)
chr1 (131-176)||(32813244-32813289)
chr1 (134-175)||(47748443-47748484)
chr1 (134-238)||(9474872-9474976)
chr1 (134-238)||(47452316-47452420)
chr1 (134-173)||(41608554-41608593)
chr1 (130-176)||(23597149-23597195)
chr1 (132-226)||(38632329-38632423)
chr1 (189-238)||(44548372-44548421)
chr1 (189-238)||(50630513-50630562)
[»] chr8 (16 HSPs)
chr8 (131-173)||(16383374-16383416)
chr8 (134-176)||(30479532-30479574)
chr8 (132-173)||(34307214-34307255)
chr8 (124-244)||(37038469-37038589)
chr8 (131-170)||(24307626-24307665)
chr8 (132-170)||(24307857-24307895)
chr8 (133-175)||(32032724-32032766)
chr8 (134-238)||(12831047-12831151)
chr8 (134-238)||(15197333-15197437)
chr8 (134-238)||(34012292-34012396)
chr8 (189-244)||(5957885-5957940)
chr8 (132-238)||(14547920-14548026)
chr8 (134-176)||(15048239-15048281)
chr8 (189-238)||(9122240-9122289)
chr8 (189-238)||(44507083-44507132)
chr8 (132-176)||(4854921-4854965)
[»] chr5 (17 HSPs)
chr5 (131-173)||(3921326-3921368)
chr5 (132-238)||(36732938-36733044)
chr5 (133-238)||(2740273-2740378)
chr5 (139-244)||(18520874-18520979)
chr5 (134-238)||(40145407-40145511)
chr5 (133-173)||(2252229-2252269)
chr5 (134-226)||(14831814-14831906)
chr5 (134-238)||(33149634-33149738)
chr5 (129-176)||(28177770-28177817)
chr5 (134-176)||(26720516-26720558)
chr5 (134-176)||(26990265-26990307)
chr5 (189-239)||(31009043-31009093)
chr5 (134-244)||(35943882-35943992)
chr5 (132-170)||(39688961-39688999)
chr5 (134-176)||(42414360-42414402)
chr5 (139-176)||(36875661-36875698)
chr5 (189-237)||(13811707-13811755)
[»] chr4 (20 HSPs)
chr4 (131-173)||(19670777-19670819)
chr4 (131-244)||(50052418-50052531)
chr4 (134-238)||(6034044-6034148)
chr4 (134-238)||(11511458-11511562)
chr4 (132-176)||(55475189-55475233)
chr4 (121-238)||(29234241-29234356)
chr4 (133-175)||(44536804-44536846)
chr4 (132-238)||(48183045-48183151)
chr4 (134-172)||(55079776-55079814)
chr4 (134-239)||(3481654-3481759)
chr4 (117-170)||(29548023-29548076)
chr4 (132-173)||(32766956-32766997)
chr4 (133-170)||(47986207-47986244)
chr4 (134-238)||(41236347-41236451)
chr4 (131-238)||(480443-480550)
chr4 (131-238)||(42044363-42044470)
chr4 (134-176)||(8343221-8343263)
chr4 (130-172)||(29239882-29239924)
chr4 (189-238)||(24995103-24995152)
chr4 (133-173)||(50813953-50813993)
[»] chr2 (15 HSPs)
chr2 (131-245)||(33436089-33436203)
chr2 (133-238)||(5574484-5574589)
chr2 (139-244)||(28863460-28863565)
chr2 (134-238)||(17473020-17473124)
chr2 (132-238)||(9058478-9058584)
chr2 (129-239)||(27864699-27864809)
chr2 (132-238)||(30915461-30915567)
chr2 (124-173)||(43490111-43490160)
chr2 (131-170)||(45097799-45097838)
chr2 (132-238)||(10249378-10249484)
chr2 (131-173)||(26891565-26891607)
chr2 (134-176)||(40613960-40614002)
chr2 (189-238)||(13438398-13438447)
chr2 (139-176)||(19930878-19930915)
chr2 (126-170)||(42257185-42257229)
[»] scaffold0321 (1 HSPs)
scaffold0321 (131-176)||(10167-10212)
[»] scaffold1268 (1 HSPs)
scaffold1268 (128-244)||(919-1035)
[»] scaffold1267 (1 HSPs)
scaffold1267 (128-244)||(919-1035)


Alignment Details
Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 13762047 - 13761923
Alignment:
Q  10 ataggtcatccaacccgcttgagtgggagccgaccaatgatgaagcaccatgtccgtaaaa-caatgaaatcgaatacattaaatgagtaaatgatttta 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  13762047 ataggtcatccaacccgcttgagtgggagccgaccaatgatgaagcaccatgttcgtaaaaccaatgaaatcgaatacattaaatgagtaaatgatttta 13761948  T
Q  109 taatccaaaaccattaaaaattaaa 133  Q
     |||||||||||| |||||||||||    
T  13761947 gaatccaaaaccactaaaaattaaa 13761923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 173
Target Start/End: Complemental strand, 30341463 - 30341421
Alignment:
Q  131 aaagagttatgatacataaacaccattaggtggcaatacaccc 173  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  30341463 aaagagttatgatacataaacacccttaggtggcaatacaccc 30341421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 15990144 - 15990103
Alignment:
Q  132 aagagttatgatacataaacaccattaggtggcaatacaccc 173  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  15990144 aagagttatgatacataaacacccttaggtggcaatacaccc 15990103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 173
Target Start/End: Complemental strand, 15508124 - 15508085
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacaccc 173  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  15508124 gagttatgatacataaacacccttaggtggcaatacaccc 15508085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 11427673 - 11427722
Alignment:
Q  189 aaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 238  Q
    |||||||||||| || |||||||||||||||||||||| | |||||||||    
T  11427673 aaaatctgacacgtagtcacgtggatcccgcacaagcacactttctcttt 11427722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 31110862 - 31110817
Alignment:
Q  131 aaagagttatgatacataaacaccattaggtggcaatacacccttt 176  Q
    |||||||||||||||||| ||| | |||||||||||||||||||||    
T  31110862 aaagagttatgatacatagacatccttaggtggcaatacacccttt 31110817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 238
Target Start/End: Original strand, 32869685 - 32869782
Alignment:
Q  141 gatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 238  Q
    |||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||| |||||||||||| | |||||||||    
T  32869685 gatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttt 32869782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 173
Target Start/End: Original strand, 4231548 - 4231587
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacaccc 173  Q
    |||||||||| |||||||| ||||||||||||||||||||    
T  4231548 gagttatgattcataaacatcattaggtggcaatacaccc 4231587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 22880753 - 22880654
Alignment:
Q  139 atgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 238  Q
    |||||||||| ||||| |||||||||||||||||||||            ||| |||||||| || ||||||||| |||||||||||| | |||||||||    
T  22880753 atgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaattctgacacgtagtcacgtggaccccgcacaagcacactttctcttt 22880654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 6209570 - 6209528
Alignment:
Q  129 ttaaagagttatgatacataaacaccattaggtggcaatacac 171  Q
    ||||||||| |||||||||| ||||| ||||||||||||||||    
T  6209570 ttaaagagtaatgatacatagacacccttaggtggcaatacac 6209528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 23128172 - 23128123
Alignment:
Q  189 aaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 238  Q
    |||||||||||| || ||||||||||||| |||||||| | |||||||||    
T  23128172 aaaatctgacacgtagtcacgtggatcccacacaagcacactttctcttt 23128123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 38044188 - 38044236
Alignment:
Q  125 aaaattaaagagttatgatacataaacaccattaggtggcaatacaccc 173  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  38044188 aaaattgaagagttatgatacataaacacccttaggtggcaatacaccc 38044236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 238
Target Start/End: Complemental strand, 8080485 - 8080379
Alignment:
Q  132 aagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattt 231  Q
    |||||| |||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||| |||||||||||| | ||    
T  8080485 aagagtaatgatacatagacacccttaggtggcaatacaccctttgacacctacataaaaatctgacacgtagtcacgtggaccccgcacaagcacactt 8080386  T
Q  232 tctcttt 238  Q
    |||||||    
T  8080385 tctcttt 8080379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 22343360 - 22343400
Alignment:
Q  133 agagttatgatacataaacaccattaggtggcaatacaccc 173  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  22343360 agagttatgatacataaacacccttaggtggcaatacaccc 22343400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 41915740 - 41915780
Alignment:
Q  133 agagttatgatacataaacaccattaggtggcaatacaccc 173  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  41915740 agagttatgatacataaacacccttaggtggcaatacaccc 41915780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 238
Target Start/End: Original strand, 38837214 - 38837321
Alignment:
Q  131 aaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatatt 230  Q
    ||||||| |||||||||| ||||| ||||||||||||||||||||             |||||||||||| || ||||||||| |||||||||||| | |    
T  38837214 aaagagtaatgatacatagacacccttaggtggcaatacacccttgtacacctacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacact 38837313  T
Q  231 ttctcttt 238  Q
    ||||||||    
T  38837314 ttctcttt 38837321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 238
Target Start/End: Original strand, 7389387 - 7389493
Alignment:
Q  132 aagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattt 231  Q
    |||||| |||||||||| ||||| |||||||||||||||| ||||            |||||||||||| || ||||||||| |||||||||||| | ||    
T  7389387 aagagtaatgatacatagacacccttaggtggcaatacactctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactt 7389486  T
Q  232 tctcttt 238  Q
    |||||||    
T  7389487 tctcttt 7389493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 238
Target Start/End: Original strand, 3434561 - 3434666
Alignment:
Q  133 agagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatatttt 232  Q
    ||||| |||||||||| ||| | |||||||||||||||||||||            |||| ||||||| || |||||||||||||||||||||| | |||    
T  3434561 agagtaatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaaactgacacgtagtcacgtggatcccgcacaagcacacttt 3434660  T
Q  233 ctcttt 238  Q
    ||||||    
T  3434661 ctcttt 3434666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 3784050 - 3784099
Alignment:
Q  189 aaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 238  Q
    |||||||||||| || |||||||||||||||||||||| | |||||||||    
T  3784050 aaaatctgacacgtagtcacgtggatcccgcacaagcacactttctcttt 3784099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 7727903 - 7727944
Alignment:
Q  131 aaagagttatgatacataaacaccattaggtggcaatacacc 172  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  7727903 aaagagttatgatacataaacacccttaggtggtaatacacc 7727944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 19329897 - 19329946
Alignment:
Q  189 aaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 238  Q
    |||||||||||| |||||||||||| |||||||||||| | |||||||||    
T  19329897 aaaatctgacacgtaatcacgtggaccccgcacaagcacactttctcttt 19329946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 238
Target Start/End: Original strand, 40957703 - 40957811
Alignment:
Q  130 taaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatat 229  Q
    |||||||| |||||||||| ||||  |||||||||||||||| ||||            |||||||||||| || |||||||||||||| ||||||| |     
T  40957703 taaagagtaatgatacatagacactcttaggtggcaatacactctttgatacccacacaaaaatctgacacgtagtcacgtggatcccgtacaagcacac 40957802  T
Q  230 tttctcttt 238  Q
    |||||||||    
T  40957803 tttctcttt 40957811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 176
Target Start/End: Original strand, 8238212 - 8238255
Alignment:
Q  134 gagttatgatacataaacaccat-taggtggcaatacacccttt 176  Q
    ||||||||||||||||||||| | ||||||||||||||||||||    
T  8238212 gagttatgatacataaacaccctgtaggtggcaatacacccttt 8238255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 173
Target Start/End: Complemental strand, 40846213 - 40846174
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacaccc 173  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  40846213 gagttatgatacataaacatccttaggtggcaatacaccc 40846174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 41423737 - 41423792
Alignment:
Q  189 aaaatctgacacataatcacgtggatcccgcacaagcatattttctctttcatctc 244  Q
    |||||||||||  |  |||||| ||||||| |||||||||||||||||||||||||    
T  41423737 aaaatctgacatgtggtcacgtagatcccgtacaagcatattttctctttcatctc 41423792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 3694422 - 3694471
Alignment:
Q  189 aaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 238  Q
    |||||||||||| || ||| |||||||||||||||||| | |||||||||    
T  3694422 aaaatctgacacgtagtcatgtggatcccgcacaagcacactttctcttt 3694471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 11044185 - 11044230
Alignment:
Q  131 aaagagttatgatacataaacaccattaggtggcaatacacccttt 176  Q
    ||||||| |||||||||| ||||| ||||||||||||||| |||||    
T  11044185 aaagagtaatgatacatagacacccttaggtggcaatacatccttt 11044230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 18207177 - 18207218
Alignment:
Q  131 aaagagttatgatacataaacaccattaggtggcaatacacc 172  Q
    |||||||||||||||||| ||| | |||||||||||||||||    
T  18207177 aaagagttatgatacatagacaaccttaggtggcaatacacc 18207218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 19436232 - 19436183
Alignment:
Q  189 aaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 238  Q
    |||||||||||| || |||||||||||||||| ||||| | |||||||||    
T  19436232 aaaatctgacacgtagtcacgtggatcccgcataagcacactttctcttt 19436183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 38267095 - 38267144
Alignment:
Q  189 aaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 238  Q
    |||||||||||| || ||||||||| |||||||||||| | |||||||||    
T  38267095 aaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttt 38267144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 238
Target Start/End: Original strand, 49607411 - 49607518
Alignment:
Q  131 aaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatatt 230  Q
    ||||||| |||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||||||| |||||||| | |    
T  49607411 aaagagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccacacaagcacact 49607510  T
Q  231 ttctcttt 238  Q
    ||||||||    
T  49607511 ttctcttt 49607518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 45058652 - 45058611
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacaccctt 175  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  45058652 gagttatgatacataaacacccttaggtggcaatacaccctt 45058611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 53982011 - 53982115
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 233  Q
    |||| |||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||| |||||||||||| | ||||    
T  53982011 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 53982110  T
Q  234 tcttt 238  Q
    |||||    
T  53982111 tcttt 53982115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 244
Target Start/End: Original strand, 8076393 - 8076503
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 233  Q
    |||| |||||||||||||||| |||||||||| ||||||||||            ||||||| |||| || ||||||||| |||||||||||| | ||||    
T  8076393 gagtaatgatacataaacacccttaggtggcagtacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttc 8076492  T
Q  234 tctttcatctc 244  Q
    |||||| ||||    
T  8076493 tctttcctctc 8076503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 11095455 - 11095411
Alignment:
Q  132 aagagttatgatacataaacaccattaggtggcaatacacccttt 176  Q
    |||||| |||||||||| ||||| |||||||||||||||||||||    
T  11095455 aagagtaatgatacatagacacccttaggtggcaatacacccttt 11095411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 33118953 - 33118909
Alignment:
Q  132 aagagttatgatacataaacaccattaggtggcaatacacccttt 176  Q
    ||||||||||||||||| ||||| ||||||| |||||||||||||    
T  33118953 aagagttatgatacatagacacccttaggtgacaatacacccttt 33118909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 33644200 - 33644304
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 233  Q
    |||| |||||||||| ||||| || ||||||||||||||||||            |||||||||||| || ||||||||| |||||||||||| | ||||    
T  33644200 gagtaatgatacatagacacccttgggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 33644299  T
Q  234 tcttt 238  Q
    |||||    
T  33644300 tcttt 33644304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 52629304 - 52629404
Alignment:
Q  138 tatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttctctt 237  Q
    ||||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||| |||| ||||||| | ||||||||    
T  52629304 tatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacactttctctt 52629403  T
Q  238 t 238  Q
    |    
T  52629404 t 52629404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 48587186 - 48587087
Alignment:
Q  139 atgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 238  Q
    |||||||||| | ||| |||||||||||||||||||||            |||||||||||| || |||||||||||||||||||| | | |||||||||    
T  48587186 atgatacatagatacccttaggtggcaatacaccctttgacacctacataaaaatctgacacgtagtcacgtggatcccgcacaagtacactttctcttt 48587087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 176
Target Start/End: Complemental strand, 26141632 - 26141590
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacacccttt 176  Q
    ||||||||||||||| ||| | |||||||||||||||||||||    
T  26141632 gagttatgatacatagacatccttaggtggcaatacacccttt 26141590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 27714993 - 27714888
Alignment:
Q  132 aagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattt 231  Q
    |||||| |||||||||| ||||| |||||||| ||||||||||||            |||||||||||| || ||| ||||| |||||||||||| | ||    
T  27714993 aagagtaatgatacatagacacctttaggtggtaatacaccctttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactt 27714894  T
Q  232 tctctt 237  Q
    ||||||    
T  27714893 tctctt 27714888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 36331479 - 36331439
Alignment:
Q  133 agagttatgatacataaacaccattaggtggcaatacaccc 173  Q
    |||||||||||||||||||||| |||| ||||||| |||||    
T  36331479 agagttatgatacataaacacccttagatggcaatgcaccc 36331439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 42823114 - 42823150
Alignment:
Q  137 ttatgatacataaacaccattaggtggcaatacaccc 173  Q
    |||||||||||||||||||||| |||| |||||||||    
T  42823114 ttatgatacataaacaccattatgtggtaatacaccc 42823150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 54868997 - 54868957
Alignment:
Q  132 aagagttatgatacataaacaccattaggtggcaatacacc 172  Q
    |||||| |||||||||| ||||| |||||||||||||||||    
T  54868997 aagagtaatgatacatagacacccttaggtggcaatacacc 54868957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 238
Target Start/End: Original strand, 38595151 - 38595258
Alignment:
Q  131 aaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatatt 230  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||            |||||||||||| || ||||||||| |||| ||||||| | |    
T  38595151 aaagagtaatgatacataaacacctttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacact 38595250  T
Q  231 ttctcttt 238  Q
    ||||||||    
T  38595251 ttctcttt 38595258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 226
Target Start/End: Original strand, 2581910 - 2582007
Alignment:
Q  129 ttaaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagca 226  Q
    ||||||||| |||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||| ||||||||||||    
T  2581910 ttaaagagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 2582007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 3000319 - 3000423
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 233  Q
    |||| |||||||||||||||| |||||||||||||||||||||            |||||||||||| || ||||||||| |||| ||||||| | ||||    
T  3000319 gagtaatgatacataaacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacactttc 3000418  T
Q  234 tcttt 238  Q
    |||||    
T  3000419 tcttt 3000423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 173
Target Start/End: Complemental strand, 50591100 - 50591061
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacaccc 173  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  50591100 gagttatgatacataaacacccttaggtggcaatacaccc 50591061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 244
Target Start/End: Complemental strand, 51898784 - 51898673
Alignment:
Q  133 agagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatatttt 232  Q
    ||||| |||||||||| ||| | |||||||||||||||||||||            |||||||||||| || |||||||||||||||||||||| | |||    
T  51898784 agagtaatgatacatagacatctttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacacttt 51898685  T
Q  233 ctctttcatctc 244  Q
    || |||| ||||    
T  51898684 ctatttcctctc 51898673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 5959103 - 5959062
Alignment:
Q  131 aaagagttatgatacataaacaccattaggtggcaatacacc 172  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  5959103 aaagagttatgatacataaacacccttaagtggcaatacacc 5959062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 27564780 - 27564731
Alignment:
Q  189 aaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 238  Q
    |||||||||||| |||||||||||| |||||||||||| | |||||||||    
T  27564780 aaaatctgacacgtaatcacgtggaccccgcacaagcacactttctcttt 27564731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 32813244 - 32813289
Alignment:
Q  131 aaagagttatgatacataaacaccattaggtggcaatacacccttt 176  Q
    |||||||||||||||||| ||| | |||||||||||||||||||||    
T  32813244 aaagagttatgatacatagacatccttaggtggcaatacacccttt 32813289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 47748443 - 47748484
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacaccctt 175  Q
    ||||||||||||||||| ||| ||||||||||||||||||||    
T  47748443 gagttatgatacataaatacccttaggtggcaatacaccctt 47748484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 9474976 - 9474872
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 233  Q
    |||| |||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||| ||||||||| || | ||||    
T  9474976 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaaacacactttc 9474877  T
Q  234 tcttt 238  Q
    |||||    
T  9474876 tcttt 9474872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 47452420 - 47452316
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 233  Q
    |||| |||||||||| ||||| |||||||| ||||||||||||            ||||||| |||| || |||||||||||||||||||||| | ||||    
T  47452420 gagtaatgatacatagacacccttaggtggtaatacaccctttgacacccacacaaaaatctaacacgtagtcacgtggatcccgcacaagcacactttc 47452321  T
Q  234 tcttt 238  Q
    |||||    
T  47452320 tcttt 47452316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 173
Target Start/End: Complemental strand, 41608593 - 41608554
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacaccc 173  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  41608593 gagttatgatacataaacatccttaggtggcaatacaccc 41608554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 23597195 - 23597149
Alignment:
Q  130 taaagagttatgatacataaacaccattaggtggcaatacacccttt 176  Q
    |||||||| |||||||||| ||| |||||||||||||||||| ||||    
T  23597195 taaagagtaatgatacatagacatcattaggtggcaatacactcttt 23597149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 226
Target Start/End: Complemental strand, 38632423 - 38632329
Alignment:
Q  132 aagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagca 226  Q
    |||||| |||||||||| ||||| ||||||||||||||||| |||            |||||||||||| || ||||||||| ||||||||||||    
T  38632423 aagagtaatgatacatagacacccttaggtggcaatacaccttttaacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagca 38632329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 44548421 - 44548372
Alignment:
Q  189 aaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 238  Q
    |||||||||||| || ||||||||| |||||||||||| | |||||||||    
T  44548421 aaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttt 44548372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 50630513 - 50630562
Alignment:
Q  189 aaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 238  Q
    |||||||||||| || ||||||||| |||||||||||| | |||||||||    
T  50630513 aaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttt 50630562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 16383374 - 16383416
Alignment:
Q  131 aaagagttatgatacataaacaccattaggtggcaatacaccc 173  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  16383374 aaagagttatgatacataaacacccttaggtggcaatacaccc 16383416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 176
Target Start/End: Complemental strand, 30479574 - 30479532
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacacccttt 176  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  30479574 gagttatgatacataaacacccttaggtggcaatacacccttt 30479532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 34307214 - 34307255
Alignment:
Q  132 aagagttatgatacataaacaccattaggtggcaatacaccc 173  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  34307214 aagagttatgatacataaacacccttaggtggcaatacaccc 34307255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 244
Target Start/End: Original strand, 37038469 - 37038589
Alignment:
Q  124 aaaaattaaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaa 223  Q
    |||||| | ||||| |||||||||| ||| | |||||||||||||||||||||            |||||||||||| || |||||||||||||||||||    
T  37038469 aaaaataatagagtaatgatacatagacatctttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaa 37038568  T
Q  224 gcatattttctctttcatctc 244  Q
    ||| | ||||| |||| ||||    
T  37038569 gcacactttctatttcctctc 37038589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 170
Target Start/End: Original strand, 24307626 - 24307665
Alignment:
Q  131 aaagagttatgatacataaacaccattaggtggcaataca 170  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  24307626 aaagagttatgatacataaacacccttaggtggcaataca 24307665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 24307895 - 24307857
Alignment:
Q  132 aagagttatgatacataaacaccattaggtggcaataca 170  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  24307895 aagagttatgatacataaacacccttaggtggcaataca 24307857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 32032724 - 32032766
Alignment:
Q  133 agagttatgatacataaacaccattaggtggcaatacaccctt 175  Q
    |||||||||||||||||||||| ||||||||||||||| ||||    
T  32032724 agagttatgatacataaacacccttaggtggcaatacatcctt 32032766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 12831047 - 12831151
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 233  Q
    |||| |||||||||| ||||| ||||||| |||||||||||||            |||||||||||| || ||||||||| |||||||||||| | ||||    
T  12831047 gagtaatgatacatagacacccttaggtgacaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 12831146  T
Q  234 tcttt 238  Q
    |||||    
T  12831147 tcttt 12831151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 15197333 - 15197437
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 233  Q
    |||| |||||||||| ||||  |||||||||||||||||||||            |||||||||||| || ||||||||| |||||||||||| | ||||    
T  15197333 gagtaatgatacatagacactcttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 15197432  T
Q  234 tcttt 238  Q
    |||||    
T  15197433 tcttt 15197437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 34012396 - 34012292
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 233  Q
    |||| |||||||||| ||||| |||||||| ||||||||||||            ||||| |||||| || |||||||||||||||||||||| | ||||    
T  34012396 gagtaatgatacatagacacccttaggtggtaatacaccctttgacacccacacaaaaatttgacacgtagtcacgtggatcccgcacaagcacactttc 34012297  T
Q  234 tcttt 238  Q
    |||||    
T  34012296 tcttt 34012292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 5957885 - 5957940
Alignment:
Q  189 aaaatctgacacataatcacgtggatcccgcacaagcatattttctctttcatctc 244  Q
    |||||||||||| || ||||||||||||||||||| || | |||||||||| ||||    
T  5957885 aaaatctgacacgtagtcacgtggatcccgcacaatcacactttctctttcctctc 5957940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 238
Target Start/End: Original strand, 14547920 - 14548026
Alignment:
Q  132 aagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattt 231  Q
    |||||| | |||||||| ||||| ||||||||||||||||| |||            |||||||||||| || ||||||||| |||||||||||| | ||    
T  14547920 aagagtaaagatacatagacacccttaggtggcaatacaccatttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactt 14548019  T
Q  232 tctcttt 238  Q
    |||||||    
T  14548020 tctcttt 14548026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 176
Target Start/End: Complemental strand, 15048281 - 15048239
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacacccttt 176  Q
    ||||||||||||||| ||| | |||||||||||||||||||||    
T  15048281 gagttatgatacatagacatccttaggtggcaatacacccttt 15048239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 9122240 - 9122289
Alignment:
Q  189 aaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 238  Q
    |||||||||||  || |||||||||||||||||||||| | |||||||||    
T  9122240 aaaatctgacatgtagtcacgtggatcccgcacaagcacactttctcttt 9122289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 44507132 - 44507083
Alignment:
Q  189 aaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 238  Q
    |||||||||||| || ||||||||| |||| ||||||||| |||||||||    
T  44507132 aaaatctgacacgtagtcacgtggaccccgtacaagcatactttctcttt 44507083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 4854965 - 4854921
Alignment:
Q  132 aagagttatgatacataaacaccattaggtggcaatacacccttt 176  Q
    |||||| |||||||||| ||| | |||||||||||||||||||||    
T  4854965 aagagtaatgatacatagacatccttaggtggcaatacacccttt 4854921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 173
Target Start/End: Complemental strand, 3921368 - 3921326
Alignment:
Q  131 aaagagttatgatacataaacaccattaggtggcaatacaccc 173  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  3921368 aaagagttatgatacataaacacccttaggtggcaatacaccc 3921326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 238
Target Start/End: Complemental strand, 36733044 - 36732938
Alignment:
Q  132 aagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattt 231  Q
    |||||| |||||||||| ||||| |||||| ||||||||||||||            ||||||||||||||| ||||||||| |||||||||||| | ||    
T  36733044 aagagtaatgatacatagacacccttaggtagcaatacaccctttgacacccacacaaaaatctgacacatagtcacgtggaccccgcacaagcacactt 36732945  T
Q  232 tctcttt 238  Q
    |||||||    
T  36732944 tctcttt 36732938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 238
Target Start/End: Original strand, 2740273 - 2740378
Alignment:
Q  133 agagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatatttt 232  Q
    ||||| |||||||||| ||| | |||||||||||||||||||||            |||||||||||| || |||||||||||||||||||||| | |||    
T  2740273 agagtaatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacacttt 2740372  T
Q  233 ctcttt 238  Q
    ||||||    
T  2740373 ctcttt 2740378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 244
Target Start/End: Complemental strand, 18520979 - 18520874
Alignment:
Q  139 atgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 238  Q
    |||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||| |||||||||||| | |||||||||    
T  18520979 atgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttt 18520880  T
Q  239 catctc 244  Q
     |||||    
T  18520879 tatctc 18520874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 40145407 - 40145511
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 233  Q
    |||| |||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||| |||||||||||| | ||||    
T  40145407 gagtaatgatacatagacacccttaggtggcaatacaccctttaacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 40145506  T
Q  234 tcttt 238  Q
    |||||    
T  40145507 tcttt 40145511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 2252269 - 2252229
Alignment:
Q  133 agagttatgatacataaacaccattaggtggcaatacaccc 173  Q
    |||||||||||||||||||| | ||||||||||||||||||    
T  2252269 agagttatgatacataaacatccttaggtggcaatacaccc 2252229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 14831814 - 14831906
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagca 226  Q
    |||| |||||||||| ||||  |||||||||||||||||||||            |||||||||||| || ||||||||||||||||||||||    
T  14831814 gagtaatgatacatagacactcttaggtggcaatacaccctttgacacccacataaaaatctgacacgtagtcacgtggatcccgcacaagca 14831906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 33149738 - 33149634
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 233  Q
    |||| |||||||||| ||||| |||||||| ||||||||||||            ||||| |||||| || |||||||||||||||||||||| | ||||    
T  33149738 gagtaatgatacatagacacccttaggtggtaatacaccctttgacacccacacaaaaatttgacacgtagtcacgtggatcccgcacaagcacactttc 33149639  T
Q  234 tcttt 238  Q
    |||||    
T  33149638 tcttt 33149634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 28177770 - 28177817
Alignment:
Q  129 ttaaagagttatgatacataaacaccattaggtggcaatacacccttt 176  Q
    |||| ||||||||||||||| ||| | |||||||||||||||||||||    
T  28177770 ttaatgagttatgatacatagacatccttaggtggcaatacacccttt 28177817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 176
Target Start/End: Original strand, 26720516 - 26720558
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacacccttt 176  Q
    ||||||||||||||| ||| | |||||||||||||||||||||    
T  26720516 gagttatgatacatagacatccttaggtggcaatacacccttt 26720558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 176
Target Start/End: Original strand, 26990265 - 26990307
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacacccttt 176  Q
    ||||||||||||||| ||| | |||||||||||||||||||||    
T  26990265 gagttatgatacatagacatccttaggtggcaatacacccttt 26990307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 31009043 - 31009093
Alignment:
Q  189 aaaatctgacacataatcacgtggatcccgcacaagcatattttctctttc 239  Q
    |||||||||||| || |||||||||||||||||||||| | ||||| ||||    
T  31009043 aaaatctgacacgtagtcacgtggatcccgcacaagcacactttctatttc 31009093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 244
Target Start/End: Complemental strand, 35943992 - 35943882
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 233  Q
    ||||||||||||||| ||||| ||||||||||||||| | |||            |||||||||||| || | ||||||||||| |||||||| | ||||    
T  35943992 gagttatgatacatagacacccttaggtggcaatacatcatttgacacccacacaaaaatctgacacgtagttacgtggatcccacacaagcacactttc 35943893  T
Q  234 tctttcatctc 244  Q
    |||||| ||||    
T  35943892 tctttcctctc 35943882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 39688999 - 39688961
Alignment:
Q  132 aagagttatgatacataaacaccattaggtggcaataca 170  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  39688999 aagagttatgatacataaacacccttaagtggcaataca 39688961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 176
Target Start/End: Complemental strand, 42414402 - 42414360
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacacccttt 176  Q
    |||| |||||||||| |||||| ||||||||||||||||||||    
T  42414402 gagtaatgatacatagacaccagtaggtggcaatacacccttt 42414360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 36875698 - 36875661
Alignment:
Q  139 atgatacataaacaccattaggtggcaatacacccttt 176  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  36875698 atgatacatagacacccttaggtggcaatacacccttt 36875661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 13811707 - 13811755
Alignment:
Q  189 aaaatctgacacataatcacgtggatcccgcacaagcatattttctctt 237  Q
    |||||||||||| || ||||||||| |||||||||||| | ||||||||    
T  13811707 aaaatctgacacgtagtcacgtggaccccgcacaagcacactttctctt 13811755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 173
Target Start/End: Complemental strand, 19670819 - 19670777
Alignment:
Q  131 aaagagttatgatacataaacaccattaggtggcaatacaccc 173  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  19670819 aaagagttatgatacataaacacccttaggtggcaatacaccc 19670777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 50052531 - 50052418
Alignment:
Q  131 aaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatatt 230  Q
    ||||||| |||||||||| ||| | |||||||||||||||||||||            |||||||||||| || ||||||||| |||||||||||| | |    
T  50052531 aaagagtaatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacact 50052432  T
Q  231 ttctctttcatctc 244  Q
    ||||||||| ||||    
T  50052431 ttctctttcctctc 50052418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 6034044 - 6034148
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 233  Q
    |||| |||||||||| ||||| |||||||||||||||||||||            |||||||||||  || |||||||||||||||||||||| | ||||    
T  6034044 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacatgtagtcacgtggatcccgcacaagcacactttc 6034143  T
Q  234 tcttt 238  Q
    |||||    
T  6034144 tcttt 6034148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 11511562 - 11511458
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 233  Q
    |||| |||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||| |||||||||||| | ||||    
T  11511562 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacataaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 11511463  T
Q  234 tcttt 238  Q
    |||||    
T  11511462 tcttt 11511458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 55475189 - 55475233
Alignment:
Q  132 aagagttatgatacataaacaccattaggtggcaatacacccttt 176  Q
    ||||||||||||||||||||| | |||||||||||||||||||||    
T  55475189 aagagttatgatacataaacatccttaggtggcaatacacccttt 55475233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 238
Target Start/End: Complemental strand, 29234356 - 29234241
Alignment:
Q  121 attaaaaattaaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgca 220  Q
    |||||||||||  |||| |||||||||| ||||| |||| ||||||||||||||||            |||||||||||| || ||||||||| ||||||    
T  29234356 attaaaaatta--gagtaatgatacatagacacccttagatggcaatacaccctttgataccttcacaaaaatctgacacgtagtcacgtggaccccgca 29234259  T
Q  221 caagcatattttctcttt 238  Q
    |||||| | |||||||||    
T  29234258 caagcacactttctcttt 29234241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 175
Target Start/End: Complemental strand, 44536846 - 44536804
Alignment:
Q  133 agagttatgatacataaacaccattaggtggcaatacaccctt 175  Q
    |||||||||||||||||||||  ||||||||||||||||||||    
T  44536846 agagttatgatacataaacacttttaggtggcaatacaccctt 44536804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 238
Target Start/End: Complemental strand, 48183151 - 48183045
Alignment:
Q  132 aagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattt 231  Q
    |||||| |||||||||| ||||| ||| |||||||||||||||||            |||||||||||| || ||||||||| |||||||||||| | ||    
T  48183151 aagagtaatgatacatagacacccttacgtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactt 48183052  T
Q  232 tctcttt 238  Q
    |||||||    
T  48183051 tctcttt 48183045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 172
Target Start/End: Complemental strand, 55079814 - 55079776
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacacc 172  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  55079814 gagttatgatacataaacacccttaggtggcaatacacc 55079776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 239
Target Start/End: Original strand, 3481654 - 3481759
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 233  Q
    |||| |||||||||| ||||| |||||||||||||||| ||||            ||||||||||||||| ||||||||| ||| |||||||| | ||||    
T  3481654 gagtaatgatacatagacacctttaggtggcaatacactctttgacacccacacaaaaatctgacacatagtcacgtggaccccacacaagcacactttc 3481753  T
Q  234 tctttc 239  Q
    ||||||    
T  3481754 tctttc 3481759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 29548076 - 29548023
Alignment:
Q  117 aaccattaaaaattaaagagttatgatacataaacaccattaggtggcaataca 170  Q
    ||||| || ||||| ||||||||||||||||||||| | |||||||||||||||    
T  29548076 aaccactataaatttaagagttatgatacataaacatccttaggtggcaataca 29548023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 32766956 - 32766997
Alignment:
Q  132 aagagttatgatacataaacaccattaggtggcaatacaccc 173  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  32766956 aagagttatgatacataaacactcttaggtggcaatacaccc 32766997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 47986207 - 47986244
Alignment:
Q  133 agagttatgatacataaacaccattaggtggcaataca 170  Q
    |||||||||||||||||||||| |||||||||||||||    
T  47986207 agagttatgatacataaacacccttaggtggcaataca 47986244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 41236347 - 41236451
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 233  Q
    |||| |||||||||| ||||| ||||||||||||||||| |||            |||||||||||| || ||||||||| |||||||||||| | ||||    
T  41236347 gagtaatgatacatagacacccttaggtggcaatacaccttttgacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttc 41236446  T
Q  234 tcttt 238  Q
    |||||    
T  41236447 tcttt 41236451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 238
Target Start/End: Complemental strand, 480550 - 480443
Alignment:
Q  131 aaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatatt 230  Q
    ||||||| |||||||||| ||||| ||||||| |||||||||||||            |||||||||||| || ||||||||| |||| ||||||| | |    
T  480550 aaagagtaatgatacatagacacccttaggtgacaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacact 480451  T
Q  231 ttctcttt 238  Q
    ||||||||    
T  480450 ttctcttt 480443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 238
Target Start/End: Complemental strand, 42044470 - 42044363
Alignment:
Q  131 aaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatatt 230  Q
    ||||||| |||||||||| ||||| ||||||||||||||| ||||             |||||||||||| || ||||||||| |||||||||||| | |    
T  42044470 aaagagtaatgatacatagacacccttaggtggcaatacatccttgtacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacact 42044371  T
Q  231 ttctcttt 238  Q
    ||||||||    
T  42044370 ttctcttt 42044363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 176
Target Start/End: Complemental strand, 8343263 - 8343221
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacacccttt 176  Q
    ||||||||||||||||||| | ||||||||||||||| |||||    
T  8343263 gagttatgatacataaacatccttaggtggcaatacatccttt 8343221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 29239882 - 29239924
Alignment:
Q  130 taaagagttatgatacataaacaccattaggtggcaatacacc 172  Q
    |||||||| |||||||||| ||||| |||||||||||||||||    
T  29239882 taaagagtaatgatacatagacacccttaggtggcaatacacc 29239924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 24995152 - 24995103
Alignment:
Q  189 aaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 238  Q
    ||||| |||||| || ||||||||| |||||||||||| |||||||||||    
T  24995152 aaaatttgacacgtagtcacgtggaccccgcacaagcacattttctcttt 24995103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 50813993 - 50813953
Alignment:
Q  133 agagttatgatacataaacaccattaggtggcaatacaccc 173  Q
    |||||||||||||||||||||  |||||||| |||||||||    
T  50813993 agagttatgatacataaacactcttaggtggtaatacaccc 50813953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 245
Target Start/End: Complemental strand, 33436203 - 33436089
Alignment:
Q  131 aaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatatt 230  Q
    ||||||| |||||||||| ||||| |||||||||||||||||||||            ||||||| |||| || ||||||||| |||||||||||| | |    
T  33436203 aaagagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacact 33436104  T
Q  231 ttctctttcatctca 245  Q
    ||||||||| |||||    
T  33436103 ttctctttcctctca 33436089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 238
Target Start/End: Complemental strand, 5574589 - 5574484
Alignment:
Q  133 agagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatatttt 232  Q
    ||||| |||||||||| ||||  |||||||||||||||||||||            |||||||||||| || |||||||||||||||||||||| | |||    
T  5574589 agagtaatgatacatagacactcttaggtggcaatacaccctttgacacccacataaaaatctgacacgtagtcacgtggatcccgcacaagcacacttt 5574490  T
Q  233 ctcttt 238  Q
    ||||||    
T  5574489 ctcttt 5574484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 28863460 - 28863565
Alignment:
Q  139 atgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 238  Q
    |||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||| |||||||||||| | |||||||||    
T  28863460 atgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttt 28863559  T
Q  239 catctc 244  Q
     |||||    
T  28863560 tatctc 28863565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 17473020 - 17473124
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattttc 233  Q
    |||| |||||||||| ||||| |||| ||||||||||||||||            |||||||||||| || |||||||||||||||||||||| | ||||    
T  17473020 gagtaatgatacatagacacccttagatggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttc 17473119  T
Q  234 tcttt 238  Q
    |||||    
T  17473120 tcttt 17473124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 238
Target Start/End: Original strand, 9058478 - 9058584
Alignment:
Q  132 aagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattt 231  Q
    |||||| |||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||| ||||| |||||||||||| | ||    
T  9058478 aagagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactt 9058577  T
Q  232 tctcttt 238  Q
    |||||||    
T  9058578 tctcttt 9058584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 27864699 - 27864809
Alignment:
Q  129 ttaaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcata 228  Q
    |||| |||| |||||||||| ||||| ||| |||||||||||||||||            |||||||||||| |||||||||||| |||||| ||||| |    
T  27864699 ttaatgagtaatgatacatagacacccttatgtggcaatacaccctttgacatccacacaaaaatctgacacgtaatcacgtggaccccgcaaaagcaca 27864798  T
Q  229 ttttctctttc 239  Q
     ||||||||||    
T  27864799 ctttctctttc 27864809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 238
Target Start/End: Original strand, 30915461 - 30915567
Alignment:
Q  132 aagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattt 231  Q
    |||||| |||||||||| ||||| |||||||||||||||||||||            |||||||||||| || ||||||||| |||| ||||||| | ||    
T  30915461 aagagtaatgatacatagacacccttaggtggcaatacaccctttgacccccacataaaaatctgacacgtagtcacgtggaccccgtacaagcacactt 30915560  T
Q  232 tctcttt 238  Q
    |||||||    
T  30915561 tctcttt 30915567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 43490111 - 43490160
Alignment:
Q  124 aaaaattaaagagttatgatacataaacaccattaggtggcaatacaccc 173  Q
    ||||| ||| ||||||||||||||||||||| ||||||| ||||||||||    
T  43490111 aaaaaataatgagttatgatacataaacacccttaggtgacaatacaccc 43490160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 170
Target Start/End: Complemental strand, 45097838 - 45097799
Alignment:
Q  131 aaagagttatgatacataaacaccattaggtggcaataca 170  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  45097838 aaagagttatgatacataaacatccttaggtggcaataca 45097799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 238
Target Start/End: Complemental strand, 10249484 - 10249378
Alignment:
Q  132 aagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcatattt 231  Q
    |||||| |||||||||| ||||| ||||||| ||||||||| |||            |||||||||||| || ||||||||| |||||||||||| | ||    
T  10249484 aagagtaatgatacatagacacccttaggtgacaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactt 10249385  T
Q  232 tctcttt 238  Q
    |||||||    
T  10249384 tctcttt 10249378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 173
Target Start/End: Complemental strand, 26891607 - 26891565
Alignment:
Q  131 aaagagttatgatacataaacaccattaggtggcaatacaccc 173  Q
    ||||||||||||||||||  |||| ||||||||||||||||||    
T  26891607 aaagagttatgatacatagccacccttaggtggcaatacaccc 26891565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 176
Target Start/End: Complemental strand, 40614002 - 40613960
Alignment:
Q  134 gagttatgatacataaacaccattaggtggcaatacacccttt 176  Q
    ||||||||||||||| ||| | |||||||||||||||||||||    
T  40614002 gagttatgatacatagacatccttaggtggcaatacacccttt 40613960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 13438398 - 13438447
Alignment:
Q  189 aaaatctgacacataatcacgtggatcccgcacaagcatattttctcttt 238  Q
    |||||||||||| || ||||||||| |||||||||||| | |||||||||    
T  13438398 aaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttt 13438447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 19930915 - 19930878
Alignment:
Q  139 atgatacataaacaccattaggtggcaatacacccttt 176  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  19930915 atgatacatagacacccttaggtggcaatacacccttt 19930878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 42257185 - 42257229
Alignment:
Q  126 aaattaaagagttatgatacataaacaccattaggtggcaataca 170  Q
    |||| |||||||||||||||||| ||| | |||||||||||||||    
T  42257185 aaataaaagagttatgatacatagacatctttaggtggcaataca 42257229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 10212 - 10167
Alignment:
Q  131 aaagagttatgatacataaacaccattaggtggcaatacacccttt 176  Q
    |||||||||||||||||| ||||| ||||||||||||||| |||||    
T  10212 aaagagttatgatacatagacacctttaggtggcaatacatccttt 10167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 244
Target Start/End: Complemental strand, 1035 - 919
Alignment:
Q  128 attaaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcat 227  Q
    ||||| |||| |||||||||| ||| | |||||||||||||||||||||            |||| ||||||| || ||||||| ||||||||||||||     
T  1035 attaatgagtaatgatacatagacatctttaggtggcaatacaccctttaacatccacacaaaaaactgacacgtagtcacgtgaatcccgcacaagcac 936  T
Q  228 attttctctttcatctc 244  Q
    | |||||||||| ||||    
T  935 actttctctttcctctc 919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 244
Target Start/End: Complemental strand, 1035 - 919
Alignment:
Q  128 attaaagagttatgatacataaacaccattaggtggcaatacaccctttnnnnnnnnnnnnaaaatctgacacataatcacgtggatcccgcacaagcat 227  Q
    ||||| |||| |||||||||| ||| | |||||||||||||||||||||            |||| ||||||| || ||||||| ||||||||||||||     
T  1035 attaatgagtaatgatacatagacatctttaggtggcaatacaccctttaacatccacacaaaaaactgacacgtagtcacgtgaatcccgcacaagcac 936  T
Q  228 attttctctttcatctc 244  Q
    | |||||||||| ||||    
T  935 actttctctttcctctc 919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University