View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18166_low_2 (Length: 547)
Name: NF18166_low_2
Description: NF18166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18166_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 63 - 543
Target Start/End: Complemental strand, 48287258 - 48286786
Alignment:
| Q |
63 |
gtttgatattaacattttaaggttgaaatttggatagtctgatcttgcagattgtcaccttttgaaaaatagtttaataaaagttttactgcattttcat |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
48287258 |
gtttgatattaacattttaaggttgaaatttggatagtctgatcttgcagattgtcaccttttgaaaaatggtttgataaaagttttaccgcattttcat |
48287159 |
T |
|
| Q |
163 |
tggagaacatgacacaactaacaagtctttccctaaacaaaaccaataaaatttgaagatgaaatgctaattaaacaaatggaataacatgaatgaagat |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
48287158 |
tggagaacatgacacaactaacaagtctttccctaaacaaaaccaataaaatttgaagatgaaatgctaa----acaaatggaataacatgaatgaagat |
48287063 |
T |
|
| Q |
263 |
tattattaactaaaaaagtgatcgatgaagagggtcatcatataacatagatagaatagttatggcgttaccatgcattaccatttgaatacagtgaagg |
362 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48287062 |
tattattaactaaacaagtgat----gaagagggtcatcatataacatagatagaatagttatggcgttaccatgcattaccatttgaatacagtgaagg |
48286967 |
T |
|
| Q |
363 |
aacaaggaggcatgtcaccattttgaatctgtctcaaagtaacatcaccacaaacaacagtaacaccaaccatcatggatttccaaccttgaaccctaac |
462 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
48286966 |
aacaaggaggcatgtcaccattttgaatctgtctcaaagtaacatcaccacaaacaacagtaacaccaatcatcatggatttccaaccttgaaccctaac |
48286867 |
T |
|
| Q |
463 |
actcgttcttgttttcacctcaacactaggcaccaaagctttactactaaaagcacttttcaacttcctcctttgcttctc |
543 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48286866 |
actcgttcttgttttcacctcaacactaggcaccaaagctttactactaaaagcacttttcaacttcctcctttgtttctc |
48286786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 48287300 - 48287271
Alignment:
| Q |
20 |
caagattgaatagttcaaatcttaaaatag |
49 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
48287300 |
caagattgaatagttcaaatcttaaaatag |
48287271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University