View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18166_low_3 (Length: 539)

Name: NF18166_low_3
Description: NF18166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18166_low_3
NF18166_low_3
[»] chr7 (3 HSPs)
chr7 (18-525)||(28592471-28592978)
chr7 (20-67)||(22851390-22851437)
chr7 (25-81)||(44895241-44895297)
[»] chr3 (3 HSPs)
chr3 (10-81)||(15085993-15086064)
chr3 (10-77)||(15267079-15267146)
chr3 (18-81)||(49321967-49322030)
[»] chr5 (2 HSPs)
chr5 (20-79)||(702909-702968)
chr5 (30-81)||(28096150-28096201)
[»] chr4 (1 HSPs)
chr4 (18-81)||(20135537-20135599)
[»] chr1 (1 HSPs)
chr1 (18-81)||(15741402-15741465)
[»] chr2 (2 HSPs)
chr2 (22-63)||(37740758-37740799)
chr2 (22-73)||(42963287-42963338)
[»] scaffold0758 (1 HSPs)
scaffold0758 (39-81)||(4850-4892)
[»] chr6 (2 HSPs)
chr6 (20-81)||(2576154-2576215)
chr6 (43-81)||(26590268-26590306)


Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 18 - 525
Target Start/End: Original strand, 28592471 - 28592978
Alignment:
Q  18 aatatcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaagattatctacaaccaatctatcactattcgaagactattatatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28592471 aatatcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaagattatctacaaccaatctatcactattcgaagactattatatt 28592570  T
Q  118 cctttaaagacaannnnnnnngttagc-tcatatcggtacgaagtttctaccgtcgtttaatattgaatctccgttgaggaacttgtagggcacataagg 216  Q
    |||||||||||||        |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  28592571 cctttaaagacaattttttttgttagcatcatatcggtacgaagtttctaccgtcgtttaatattgaatctccgttggggaacttgcagggcacataagg 28592670  T
Q  217 tgggttctcccctatcatacacttgaaaaatataattaatatcacttaaaaattaaattgacaattgagaggataaatagaaaagttgttgtagagcaaa 316  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28592671 tgggttctcccctctcatacacttgaaaaatataattaatatcacttaaaaattaaattgacaattgagag-ataaatagaaaagttgttgtagagcaaa 28592769  T
Q  317 agggggaagtaatttaagaataacatttaaactagacataagaaatgtaaaaacaatcaaccaatgacaaacaaaataaattcacagtctcatcacattc 416  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28592770 agggggaagtaatttaagaataacatttaaactagaaataagaaatgtaaaaacaatcaaccaatgacaaacaaaataaattcacagtctcatcacattc 28592869  T
Q  417 aacaaactagattcaattcatacaaactagtaatacaaaccagagaaacaactttgttcttccattccttcaaaaaactttgttcttgcctgttttctgc 516  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28592870 aacaaactagattcaattcatacaaactagtaatacaaactagagaaacaaatttgttcttgcattccttcaaaaaactttgttcttgcctgttttctgc 28592969  T
Q  517 tagtataat 525  Q
    |||||||||    
T  28592970 tagtataat 28592978  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 22851390 - 22851437
Alignment:
Q  20 tatcattgtcattgatggaattgtcatcattcaaattttcattagatt 67  Q
    |||||||||||||||||| || |||||| || ||||||||||||||||    
T  22851390 tatcattgtcattgatgggatcgtcatcttttaaattttcattagatt 22851437  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 44895297 - 44895241
Alignment:
Q  25 ttgtcattgatggaattgtcatcattcaaattttcattagatttttcaagattatct 81  Q
    ||||||||||||  ||| |||||||||||| |||||||| ||| ||||||| |||||    
T  44895297 ttgtcattgatgagattatcatcattcaaaatttcattatattgttcaagagtatct 44895241  T

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Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 15085993 - 15086064
Alignment:
Q  10 acatcatcaatatcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaagattatct 81  Q
    |||||| || |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  15085993 acatcaacattatcattgtcattgatgggattgtcatcattcaaattttcattagattgttcaagattatct 15086064  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 15267079 - 15267146
Alignment:
Q  10 acatcatcaatatcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaagatt 77  Q
    |||||| || |||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||    
T  15267079 acatcaacattatcattgtcattgatgagattgtcatcattcaaattttcattagattgttcaagatt 15267146  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 49322030 - 49321967
Alignment:
Q  18 aatatcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaagattatct 81  Q
    |||||||| ||||| ||||  ||||||||||||||||||||||||||| | |||||| ||||||    
T  49322030 aatatcatggtcatcgatgagattgtcatcattcaaattttcattagaatgttcaaggttatct 49321967  T

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Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 702968 - 702909
Alignment:
Q  20 tatcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaagattat 79  Q
    |||||||||||||||||  ||||||||||||| ||||||||||||||| |||||||||||    
T  702968 tatcattgtcattgatgagattgtcatcattcgaattttcattagattgttcaagattat 702909  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 28096201 - 28096150
Alignment:
Q  30 attgatggaattgtcatcattcaaattttcattagatttttcaagattatct 81  Q
    |||||||| ||||||||||||| ||||||||||||||| |||||||||||||    
T  28096201 attgatgggattgtcatcattccaattttcattagattgttcaagattatct 28096150  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 20135599 - 20135537
Alignment:
Q  18 aatatcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaagattatct 81  Q
    |||||||| |||||| ||| ||||||||||||||||||||| |||||||| |||||||||||||    
T  20135599 aatatcatggtcattaatgaaattgtcatcattcaaatttt-attagattcttcaagattatct 20135537  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 15741465 - 15741402
Alignment:
Q  18 aatatcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaagattatct 81  Q
    ||||||||  ||||| |||  ||||||||||||||||||||||||||||| |||||||||||||    
T  15741465 aatatcatgatcattaatgagattgtcatcattcaaattttcattagattgttcaagattatct 15741402  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 37740758 - 37740799
Alignment:
Q  22 tcattgtcattgatggaattgtcatcattcaaattttcatta 63  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  37740758 tcattgtcattgatgggattgtcatcattcaaattttcatta 37740799  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 42963287 - 42963338
Alignment:
Q  22 tcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaa 73  Q
    |||||||||||||||| ||||| | |||||||||||| |||||||| |||||    
T  42963287 tcattgtcattgatgggattgtaaacattcaaatttttattagattgttcaa 42963338  T

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Target: scaffold0758 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 4892 - 4850
Alignment:
Q  39 attgtcatcattcaaattttcattagatttttcaagattatct 81  Q
    |||||||||||| |||||||||||||||| |||||||||||||    
T  4892 attgtcatcatttaaattttcattagattgttcaagattatct 4850  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 2576154 - 2576215
Alignment:
Q  20 tatcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaagattatct 81  Q
    ||||||| ||||||||   |||| |||||||| ||||||||||||||| |||||||||||||    
T  2576154 tatcattttcattgatatgattgccatcattccaattttcattagattgttcaagattatct 2576215  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 26590306 - 26590268
Alignment:
Q  43 tcatcattcaaattttcattagatttttcaagattatct 81  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  26590306 tcatcattccaattttcattagattgttcaagattatct 26590268  T

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