View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18166_low_4 (Length: 516)
Name: NF18166_low_4
Description: NF18166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18166_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 471; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 15 - 508
Target Start/End: Original strand, 39727570 - 39728063
Alignment:
| Q |
15 |
caaggagcacctatgcgttggttacaaggaaaaatgcttgaacaataaagtgattgagttgtttctgcggtcaaaagcagacgtcatttaatgttttcaa |
114 |
Q |
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| T |
39727570 |
caaggagcacctatgcgttggttacaaggaaaaatgcttgaacaataaagtgattgagttgtttcggcggtcaaaagcagacgtcatttaatgttttcaa |
39727669 |
T |
|
| Q |
115 |
ggtatcatcattggttacactcttgtcaat-gaggatttatgtacaagcactaatgtgattatatagaataaggctggctaataattcttggtaaagaat |
213 |
Q |
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| T |
39727670 |
ggtatcatcattggttacactcttgtcaattgaggatttatgtacaagcactaatgtgattatatagaataaggctgcctaataattcttggtaaagaat |
39727769 |
T |
|
| Q |
214 |
tctgttcaatagttacatatatagctaaatatgtaccgagaatattctaatcctaaatgggcgccaattgcatatttacaactctcccttcaagcaatgt |
313 |
Q |
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| T |
39727770 |
tctgttcaatagttacatatatagctaaatatgtaccgagaatattcta-tcctaaatgggcgccaattgcatatttacaactctcccttcaagcaatgt |
39727868 |
T |
|
| Q |
314 |
caatcattccctgcttgcaagatcttgaaaccactttgttggaagtcctcccttagtgaaaacatttgcgaattgaagtccaaaagaccaggtcactatc |
413 |
Q |
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| T |
39727869 |
caatcattccctgcttgcaagatcttgaaaccactttgttggaagtcctcccttagtgaaaacatttgcgaattgaagtccaaaagaccaggtcactatc |
39727968 |
T |
|
| Q |
414 |
taatttctccttgatgaagggtcaatgtatctatatgtatttgattctatcatgcgtgttgggttacatgcattgctaatggaagaagtattatc |
508 |
Q |
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| T |
39727969 |
taatttctccttgatgaagggtcaatgtatctatatgtatttgattctatcatgcgtgttgggttacatgcattgctaatggaagaagtattatc |
39728063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 39866307 - 39866265
Alignment:
| Q |
144 |
tgaggatttatgtacaagcactaatgtgattatatagaataag |
186 |
Q |
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| T |
39866307 |
tgaggattgatgtacaagcactaatgtgattatatagaataag |
39866265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 39912671 - 39912621
Alignment:
| Q |
75 |
gtttctgcggtcaaaagcagacgtcatttaatgttttcaaggtatcatcat |
125 |
Q |
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| T |
39912671 |
gtttctgtgttcaaaagcagacatcatttaacgttttcaaggtatcatcat |
39912621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 39858776 - 39858741
Alignment:
| Q |
87 |
aaaagcagacgtcatttaatgttttcaaggtatcat |
122 |
Q |
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| T |
39858776 |
aaaagcagacgtcatttaacgttttcaaggtatcat |
39858741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 132
Target Start/End: Complemental strand, 37467715 - 37467669
Alignment:
| Q |
86 |
caaaagcagacgtcatttaatgttttcaaggtatcatcattggttac |
132 |
Q |
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| T |
37467715 |
caaaagcagacaccatttaacgttttcaaggtatcatcattagttac |
37467669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 39866398 - 39866345
Alignment:
| Q |
85 |
tcaaaagcagacgtcatttaatgttttcaaggtatcatcattggttacactctt |
138 |
Q |
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||||||||||| ||||||||| |||||||||||||||||| |||||| |||| |
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| T |
39866398 |
tcaaaagcagatgtcatttaacattttcaaggtatcatcatcagttacagtctt |
39866345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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