View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18166_low_5 (Length: 451)

Name: NF18166_low_5
Description: NF18166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18166_low_5
NF18166_low_5
[»] chr7 (25 HSPs)
chr7 (13-438)||(37307879-37308290)
chr7 (24-67)||(9819565-9819608)
chr7 (24-67)||(10721490-10721533)
chr7 (26-67)||(29734808-29734849)
chr7 (24-67)||(1285085-1285128)
chr7 (24-67)||(3948056-3948099)
chr7 (24-63)||(4398332-4398371)
chr7 (24-63)||(8683076-8683115)
chr7 (24-67)||(22267583-22267626)
chr7 (24-67)||(25246773-25246816)
chr7 (25-67)||(3196659-3196701)
chr7 (26-68)||(8663295-8663337)
chr7 (25-63)||(9522918-9522956)
chr7 (24-66)||(10555359-10555401)
chr7 (25-63)||(39280835-39280873)
chr7 (25-63)||(42435415-42435453)
chr7 (25-67)||(44558791-44558833)
chr7 (25-62)||(29237574-29237611)
chr7 (30-67)||(31037665-31037702)
chr7 (30-63)||(36803844-36803877)
chr7 (25-66)||(46823035-46823076)
chr7 (27-63)||(4346667-4346703)
chr7 (25-65)||(16577877-16577917)
chr7 (25-65)||(16587745-16587785)
chr7 (27-67)||(29461840-29461880)
[»] chr3 (31 HSPs)
chr3 (25-63)||(33223874-33223912)
chr3 (25-63)||(7232201-7232239)
chr3 (25-66)||(2662095-2662136)
chr3 (25-66)||(39100101-39100142)
chr3 (24-63)||(39216357-39216396)
chr3 (25-59)||(2078250-2078284)
chr3 (25-59)||(3176990-3177024)
chr3 (25-67)||(3755341-3755383)
chr3 (25-67)||(5428453-5428495)
chr3 (25-63)||(6901471-6901509)
chr3 (25-67)||(7202933-7202975)
chr3 (25-63)||(13800673-13800711)
chr3 (25-63)||(18870742-18870780)
chr3 (25-67)||(43345024-43345066)
chr3 (25-63)||(43490434-43490472)
chr3 (25-63)||(45431954-45431992)
chr3 (25-63)||(50570206-50570244)
chr3 (25-67)||(54230116-54230158)
chr3 (26-59)||(1757687-1757720)
chr3 (26-63)||(7868728-7868765)
chr3 (25-66)||(8174273-8174314)
chr3 (25-58)||(10440695-10440728)
chr3 (26-63)||(35492799-35492836)
chr3 (25-66)||(35548305-35548346)
chr3 (14-63)||(38869524-38869573)
chr3 (29-66)||(53852738-53852775)
chr3 (27-67)||(15005946-15005986)
chr3 (24-63)||(24120436-24120476)
chr3 (26-66)||(47185822-47185862)
chr3 (26-58)||(48022332-48022364)
chr3 (25-61)||(48511258-48511294)
[»] chr2 (27 HSPs)
chr2 (25-67)||(18782557-18782599)
chr2 (25-67)||(3197096-3197138)
chr2 (25-63)||(7206131-7206169)
chr2 (25-63)||(22608533-22608571)
chr2 (24-63)||(7029407-7029446)
chr2 (24-67)||(28771584-28771627)
chr2 (24-67)||(30762511-30762554)
chr2 (28-63)||(37984361-37984396)
chr2 (29-63)||(8727727-8727761)
chr2 (25-67)||(12124547-12124589)
chr2 (25-67)||(16221363-16221405)
chr2 (29-67)||(20517024-20517062)
chr2 (25-63)||(20565092-20565130)
chr2 (25-63)||(24592863-24592901)
chr2 (25-59)||(25395459-25395493)
chr2 (25-63)||(26999116-26999154)
chr2 (24-66)||(29133500-29133542)
chr2 (25-67)||(29896311-29896353)
chr2 (25-63)||(30243256-30243294)
chr2 (25-67)||(34464426-34464468)
chr2 (25-67)||(35685078-35685120)
chr2 (25-67)||(43117207-43117249)
chr2 (26-67)||(690790-690831)
chr2 (26-67)||(13490727-13490768)
chr2 (29-58)||(30799109-30799138)
chr2 (26-63)||(35451261-35451298)
chr2 (26-63)||(41668661-41668698)
[»] chr8 (25 HSPs)
chr8 (25-66)||(40919376-40919417)
chr8 (25-63)||(37015853-37015891)
chr8 (29-68)||(1230682-1230721)
chr8 (24-63)||(13286137-13286176)
chr8 (25-67)||(7553681-7553723)
chr8 (25-67)||(8717492-8717534)
chr8 (25-63)||(11708992-11709030)
chr8 (25-67)||(12714387-12714429)
chr8 (25-67)||(13575291-13575333)
chr8 (25-63)||(20469328-20469366)
chr8 (25-67)||(29652220-29652262)
chr8 (25-63)||(33445576-33445614)
chr8 (25-63)||(36018547-36018585)
chr8 (25-63)||(39821890-39821928)
chr8 (25-63)||(44019555-44019593)
chr8 (25-66)||(444127-444168)
chr8 (31-64)||(15167055-15167088)
chr8 (25-62)||(29908018-29908055)
chr8 (25-58)||(31336824-31336857)
chr8 (26-67)||(37750017-37750058)
chr8 (27-67)||(1243760-1243800)
chr8 (27-67)||(1254460-1254500)
chr8 (24-64)||(3757973-3758013)
chr8 (26-58)||(33996080-33996112)
chr8 (26-58)||(35700413-35700445)
[»] chr4 (30 HSPs)
chr4 (24-59)||(45970723-45970758)
chr4 (25-63)||(21317355-21317393)
chr4 (25-66)||(2649750-2649791)
chr4 (24-63)||(8494993-8495032)
chr4 (24-67)||(12671764-12671807)
chr4 (24-63)||(23154600-23154639)
chr4 (24-67)||(38812865-38812908)
chr4 (25-67)||(3299111-3299153)
chr4 (25-63)||(3936633-3936671)
chr4 (25-63)||(11286798-11286836)
chr4 (25-59)||(17423194-17423228)
chr4 (33-67)||(18458754-18458788)
chr4 (25-63)||(20403185-20403223)
chr4 (25-63)||(20799411-20799449)
chr4 (29-67)||(22164290-22164328)
chr4 (25-63)||(27655737-27655775)
chr4 (25-67)||(28031814-28031856)
chr4 (25-67)||(28435265-28435307)
chr4 (25-67)||(34247442-34247484)
chr4 (25-59)||(41520964-41520998)
chr4 (25-63)||(50362156-50362194)
chr4 (29-63)||(54500575-54500609)
chr4 (25-67)||(55430598-55430640)
chr4 (26-67)||(14577525-14577566)
chr4 (25-66)||(16304115-16304156)
chr4 (26-63)||(42198594-42198631)
chr4 (26-58)||(19997382-19997414)
chr4 (23-63)||(22279535-22279575)
chr4 (27-63)||(39669515-39669551)
chr4 (27-67)||(50376674-50376714)
[»] chr1 (42 HSPs)
chr1 (24-67)||(11014234-11014277)
chr1 (13-67)||(14905421-14905475)
chr1 (25-67)||(16533050-16533092)
chr1 (29-67)||(44243875-44243913)
chr1 (25-67)||(47961306-47961348)
chr1 (25-61)||(37045163-37045199)
chr1 (27-63)||(50533077-50533113)
chr1 (24-63)||(23171313-23171352)
chr1 (25-67)||(3393585-3393627)
chr1 (29-67)||(3528490-3528528)
chr1 (25-63)||(5503782-5503820)
chr1 (29-63)||(7925370-7925404)
chr1 (25-63)||(13234084-13234122)
chr1 (25-63)||(21400040-21400078)
chr1 (25-67)||(28032286-28032328)
chr1 (25-67)||(29233991-29234033)
chr1 (25-67)||(30561725-30561767)
chr1 (25-63)||(30795707-30795745)
chr1 (25-59)||(32497498-32497532)
chr1 (25-59)||(32950778-32950812)
chr1 (25-67)||(34521207-34521249)
chr1 (13-63)||(34632175-34632225)
chr1 (29-63)||(36371061-36371095)
chr1 (25-63)||(48681950-48681988)
chr1 (25-63)||(52441528-52441566)
chr1 (30-63)||(14393-14426)
chr1 (25-66)||(1864236-1864277)
chr1 (26-67)||(3431332-3431373)
chr1 (25-58)||(12269001-12269034)
chr1 (25-62)||(13775628-13775665)
chr1 (26-63)||(18166608-18166645)
chr1 (26-67)||(24695561-24695602)
chr1 (24-69)||(29741950-29741995)
chr1 (30-67)||(40214701-40214738)
chr1 (27-59)||(5291107-5291139)
chr1 (24-64)||(25365012-25365052)
chr1 (26-58)||(28455371-28455403)
chr1 (19-67)||(29441892-29441940)
chr1 (26-58)||(32864303-32864335)
chr1 (27-59)||(33229701-33229733)
chr1 (30-66)||(39916957-39916993)
chr1 (23-67)||(40618912-40618956)
[»] chr6 (19 HSPs)
chr6 (25-67)||(30639443-30639485)
chr6 (25-67)||(32193876-32193918)
chr6 (25-59)||(331903-331937)
chr6 (25-67)||(866302-866344)
chr6 (25-67)||(1918475-1918517)
chr6 (29-67)||(2105907-2105945)
chr6 (13-67)||(8809308-8809362)
chr6 (25-63)||(10780124-10780162)
chr6 (25-67)||(21936050-21936092)
chr6 (25-67)||(24373727-24373769)
chr6 (25-63)||(32149144-32149182)
chr6 (25-63)||(33938696-33938734)
chr6 (25-63)||(34701153-34701191)
chr6 (26-67)||(12028-12069)
chr6 (26-63)||(12276249-12276286)
chr6 (30-67)||(29457183-29457220)
chr6 (26-54)||(20129003-20129031)
chr6 (26-54)||(22203839-22203867)
chr6 (25-65)||(26587396-26587436)
[»] chr5 (31 HSPs)
chr5 (24-62)||(1642341-1642379)
chr5 (25-67)||(18489093-18489135)
chr5 (25-67)||(18538610-18538652)
chr5 (26-67)||(17861981-17862022)
chr5 (26-63)||(27721693-27721730)
chr5 (26-66)||(10917333-10917373)
chr5 (27-58)||(13150872-13150903)
chr5 (24-67)||(20365488-20365531)
chr5 (25-63)||(6489013-6489051)
chr5 (25-67)||(11017178-11017220)
chr5 (25-67)||(13409430-13409472)
chr5 (25-63)||(15889417-15889455)
chr5 (25-67)||(18278276-18278318)
chr5 (25-63)||(18789042-18789080)
chr5 (24-58)||(20206526-20206560)
chr5 (25-67)||(27903115-27903157)
chr5 (25-63)||(29962364-29962402)
chr5 (25-63)||(30012396-30012434)
chr5 (25-63)||(31591554-31591592)
chr5 (25-63)||(31602842-31602880)
chr5 (25-67)||(34206229-34206271)
chr5 (25-63)||(34436857-34436895)
chr5 (25-63)||(37614444-37614482)
chr5 (25-63)||(37791180-37791218)
chr5 (26-63)||(1669598-1669635)
chr5 (26-63)||(5485192-5485229)
chr5 (26-63)||(19248485-19248522)
chr5 (30-67)||(37054291-37054328)
chr5 (30-58)||(11666014-11666042)
chr5 (26-54)||(39431143-39431171)
chr5 (27-67)||(41083562-41083602)
[»] scaffold0122 (2 HSPs)
scaffold0122 (24-68)||(31171-31215)
scaffold0122 (25-67)||(14203-14245)
[»] scaffold1320 (1 HSPs)
scaffold1320 (31-64)||(1782-1815)
[»] scaffold0005 (1 HSPs)
scaffold0005 (26-67)||(239809-239850)
[»] scaffold0072 (1 HSPs)
scaffold0072 (27-63)||(25701-25737)


Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 13 - 438
Target Start/End: Original strand, 37307879 - 37308290
Alignment:
Q  13 tgaacatcgggtcttgcatatattatgcattgtttctaccaactgagctaaactcgatgattagataaatttgtttaattaaataaatgaatttcaaacc 112  Q
    |||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37307879 tgaacatcggatcttgcatatattatgcattgttcctatcaactgagctaaactcgatgattagataaatttgtttaattaaataaatgaatttcaaacc 37307978  T
Q  113 gcaaagagccaaacttaaataaatttgaagtgttggcatcatttacactgccagatatgtggcggctcatacttctttccggtgtgaaaatatgtttcaa 212  Q
    |||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  37307979 gcaaagagccaaacttaaataaatttgaagt-------------acactgccagatatgtggcggctcatacttctttccggtgtgaaaatatgtttaaa 37308065  T
Q  213 aggtgtataatgtgtaaagaacttttttccgtcattcaaactcaatgcgtacgaatgctggaaattttgtacatagaagatgacttttcttttttactaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37308066 aggtgtataatgtgtaaagaacttttttccgtcattcaaactcaatgcgtacgaatgctggaaattttgtacatagaagatgacttttcttttttactaa 37308165  T
Q  313 acacacgagaggacttaaatttcagtgtgacggggtgtgtagacttaccaaataccaatcagaagacaactgattttgaagattgcaccattcaacattt 412  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37308166 acacacgagaggacttaaatttcagtgtgacgaggtgtgtagacttacc-aataccaatcagaagacaactgattttgaagattgcaccattcaacattt 37308264  T
Q  413 tgcaaagccggtggaggctcttattg 438  Q
    |||||||||||||||| |||||||||    
T  37308265 tgcaaagccggtggagcctcttattg 37308290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 9819565 - 9819608
Alignment:
Q  24 tcttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||||||| |||||||||||| |||||||    
T  9819565 tcttgcatatattatgcattgttcctaccaactgagataaactc 9819608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 10721490 - 10721533
Alignment:
Q  24 tcttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||||||| |||||||||||| |||||||    
T  10721490 tcttgcatatattatgcattgttcctaccaactgagataaactc 10721533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 29734808 - 29734849
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  29734808 ttgcatatattatgcattgtttctatcgactgagctaaactc 29734849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 1285085 - 1285128
Alignment:
Q  24 tcttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||||||| ||| |||||||| |||||||    
T  1285085 tcttgcatatattatgcattgttcctatcaactgagttaaactc 1285128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 3948099 - 3948056
Alignment:
Q  24 tcttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||||||||||| |||| |||||||| |||||||    
T  3948099 tcttgcatatattatgcattgtctctatcaactgagttaaactc 3948056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 4398371 - 4398332
Alignment:
Q  24 tcttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  4398371 tcttgcatatattatgcattgttcttaccaactgagctaa 4398332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 8683115 - 8683076
Alignment:
Q  24 tcttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  8683115 tcttgcatatattatgcattgtctataccaactgagctaa 8683076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 22267626 - 22267583
Alignment:
Q  24 tcttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||| ||||||||||||||||| ||||||||||||| |||||||    
T  22267626 tcttacatatattatgcattgtctctaccaactgagttaaactc 22267583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 25246816 - 25246773
Alignment:
Q  24 tcttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||||||||||| | || ||||||||||||||||    
T  25246816 tcttgcatatattatgcattgtctttatcaactgagctaaactc 25246773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 3196659 - 3196701
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||| |||||| | |||||||||||||||||||    
T  3196659 cttgcatatattatacattgtctttaccaactgagctaaactc 3196701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 8663337 - 8663295
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactgagctaaactcg 68  Q
    |||||||||||||||||| || |||||||||||||||| ||||    
T  8663337 ttgcatatattatgcattcttgctaccaactgagctaagctcg 8663295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 9522956 - 9522918
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  9522956 cttgcatatattatgcattgttcataccaactgagctaa 9522918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 10555359 - 10555401
Alignment:
Q  24 tcttgcatatattatgcattgtttctaccaactgagctaaact 66  Q
    ||||||||||||||| |||||||  ||||||||||||||||||    
T  10555359 tcttgcatatattatacattgttcataccaactgagctaaact 10555401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 39280835 - 39280873
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  39280835 cttgcatatattatgcattgttcttaccaactgagctaa 39280873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 42435415 - 42435453
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||| || |||||||||||||||||    
T  42435415 cttgcatatattatgcatagtctctaccaactgagctaa 42435453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 44558791 - 44558833
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  44558791 cttgcatatattatgcattgtccataccaactgagctaaactc 44558833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 29237574 - 29237611
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagcta 62  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  29237574 cttgcatatattatgcattgttcttaccaactgagcta 29237611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 31037665 - 31037702
Alignment:
Q  30 atatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  31037665 atatattatgcattgttcctaccaactgagttaaactc 31037702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 36803877 - 36803844
Alignment:
Q  30 atatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||| |||||||||||||||||    
T  36803877 atatattatgcattgtctctaccaactgagctaa 36803844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 46823076 - 46823035
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaact 66  Q
    |||||||||||||||||||| | |||||| ||||||||||||    
T  46823076 cttgcatatattatgcattgctcctaccagctgagctaaact 46823035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 4346703 - 4346667
Alignment:
Q  27 tgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||  ||||||||||||||||    
T  4346703 tgcatatattatgcattgtccctaccaactgagctaa 4346667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 16577877 - 16577917
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaac 65  Q
    ||||||||||||||| |||||  ||||||||||||||||||    
T  16577877 cttgcatatattatgtattgtccctaccaactgagctaaac 16577917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 16587785 - 16587745
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaac 65  Q
    ||||||||||||||| |||||  ||||||||||||||||||    
T  16587785 cttgcatatattatgtattgtccctaccaactgagctaaac 16587745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 29461840 - 29461880
Alignment:
Q  27 tgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||||||||  |||||||||||| |||||||    
T  29461840 tgcatatattatgcattgtccctaccaactgagttaaactc 29461880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 33223912 - 33223874
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33223912 cttgcatatattatgcattgtttctaccaactgagctaa 33223874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 7232201 - 7232239
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  7232201 cttgcatatattatgcattgtttctaccaactgacctaa 7232239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 2662136 - 2662095
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaact 66  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  2662136 cttgcatatattatgcattgtctttaccaactgagctaaact 2662095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 39100101 - 39100142
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaact 66  Q
    ||||||||||||||||||||||| || |||||||||||||||    
T  39100101 cttgcatatattatgcattgtttataacaactgagctaaact 39100142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 39216396 - 39216357
Alignment:
Q  24 tcttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||| | |||||||||||||||||    
T  39216396 tcttgcatatattatgcattttctctaccaactgagctaa 39216357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 2078284 - 2078250
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgag 59  Q
    ||||||||||||||||||||| |||||||||||||    
T  2078284 cttgcatatattatgcattgtctctaccaactgag 2078250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 3176990 - 3177024
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgag 59  Q
    |||||||||||||||||||||| ||||||||||||    
T  3176990 cttgcatatattatgcattgttcctaccaactgag 3177024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 3755383 - 3755341
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||||||||||  |||||||| |||||||||||    
T  3755383 cttgcatatattatgcattgtccctaccaaccgagctaaactc 3755341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 5428453 - 5428495
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||||||| || ||| ||||||||||||    
T  5428453 cttgcatatattatgcattgtttttatcaattgagctaaactc 5428495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 6901471 - 6901509
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  6901471 cttgcatatattatacattgttcctaccaactgagctaa 6901509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 7202933 - 7202975
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||| |||||||||||| | ||||||||||||||||||    
T  7202933 cttgcatattttatgcattgttccaaccaactgagctaaactc 7202975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 13800711 - 13800673
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  13800711 cttgcatatattatgcattgttcttaccaactgagctaa 13800673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 18870742 - 18870780
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  18870742 cttgcatatattatgcattgtccctaccaactgagctaa 18870780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 43345024 - 43345066
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||| ||||||  |||||||||||||||||||    
T  43345024 cttgcatatattatgtattgttcataccaactgagctaaactc 43345066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 43490434 - 43490472
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  43490434 cttgcatatattatgcattgttcataccaactgagctaa 43490472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 45431992 - 45431954
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  45431992 cttgcatatattatgcattgtccctaccaactgagctaa 45431954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 50570206 - 50570244
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  50570206 cttgcatatattatgcattgtctataccaactgagctaa 50570244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 54230116 - 54230158
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  54230116 cttgcatatattatgcattgtccttaccaactgagctaaactc 54230158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 1757687 - 1757720
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactgag 59  Q
    ||||||||||||||||||||| ||||||||||||    
T  1757687 ttgcatatattatgcattgttcctaccaactgag 1757720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 7868765 - 7868728
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||||  |||||||||||||||    
T  7868765 ttgcatatattatgcattgttcttaccaactgagctaa 7868728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 8174314 - 8174273
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaact 66  Q
    ||||||||||||||  ||||| ||||||||||||||||||||    
T  8174314 cttgcatatattatatattgtctctaccaactgagctaaact 8174273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 10440728 - 10440695
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactga 58  Q
    ||||||||||||||||||||| ||||||||||||    
T  10440728 cttgcatatattatgcattgtctctaccaactga 10440695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 35492836 - 35492799
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||||  |||||||||||||||    
T  35492836 ttgcatatattatgcattgttcttaccaactgagctaa 35492799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 35548305 - 35548346
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaact 66  Q
    |||||||||||||| |||||||  ||||||||||||||||||    
T  35548305 cttgcatatattatacattgttcataccaactgagctaaact 35548346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 38869524 - 38869573
Alignment:
Q  14 gaacatcgggtcttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||| |||| ||||| |||||||||||||||||  |||||||||||||||    
T  38869524 gaacctcggatcttgtatatattatgcattgttcttaccaactgagctaa 38869573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 53852775 - 53852738
Alignment:
Q  29 catatattatgcattgtttctaccaactgagctaaact 66  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  53852775 catatattatgcattgtttatgccaactgagctaaact 53852738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 15005986 - 15005946
Alignment:
Q  27 tgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||| |||||||| ||||||| |||||||||||||||||    
T  15005986 tgcataaattatgcaatgtttctgccaactgagctaaactc 15005946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 24120436 - 24120476
Alignment:
Q  24 tcttgcatatattatgca-ttgtttctaccaactgagctaa 63  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  24120436 tcttgcatatattatgcatttgtctctaccaactgagctaa 24120476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 47185822 - 47185862
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactgagctaaact 66  Q
    |||||||| ||||||||||| | ||||||||||||||||||    
T  47185822 ttgcatattttatgcattgtctttaccaactgagctaaact 47185862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 48022332 - 48022364
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactga 58  Q
    |||||||||||||||||||| ||||||||||||    
T  48022332 ttgcatatattatgcattgtctctaccaactga 48022364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 48511294 - 48511258
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagct 61  Q
    |||||||||||||||||||||  ||||||||||||||    
T  48511294 cttgcatatattatgcattgtccctaccaactgagct 48511258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 18782557 - 18782599
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  18782557 cttgcatatattatgcattgtttctaccaacttagctaaactc 18782599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 3197096 - 3197138
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||||||||||  ||||||||||||||||||||    
T  3197096 cttgcatatattatgcattgtccctaccaactgagctaaactc 3197138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 7206169 - 7206131
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  7206169 cttgcatatattatgcattgtctctaccaactgagctaa 7206131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 22608571 - 22608533
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  22608571 cttgcatatattatgcattgtctctaccaactgagctaa 22608533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 7029407 - 7029446
Alignment:
Q  24 tcttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||| ||||||| |||||||||||||||    
T  7029407 tcttgcatatattatgtattgtttttaccaactgagctaa 7029446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 28771627 - 28771584
Alignment:
Q  24 tcttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||||||   |||||||||||||||||||    
T  28771627 tcttgcatatattatgcattgtccttaccaactgagctaaactc 28771584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 30762511 - 30762554
Alignment:
Q  24 tcttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||| ||||||||||| | |||||||||||||||||||    
T  30762511 tcttgcatattttatgcattgtctataccaactgagctaaactc 30762554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 37984396 - 37984361
Alignment:
Q  28 gcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||| |||||||||||||||    
T  37984396 gcatatattatgcattgtttataccaactgagctaa 37984361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 8727727 - 8727761
Alignment:
Q  29 catatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||||||||||| |||||||||||    
T  8727727 catatattatgcattgtttctactaactgagctaa 8727761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 12124589 - 12124547
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  12124589 cttgcatatattatgcattgtccttaccaactgagctaaactc 12124547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 16221363 - 16221405
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||| ||||||||||||  |||||||||||||||||||    
T  16221363 cttgcatattttatgcattgttcataccaactgagctaaactc 16221405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 20517062 - 20517024
Alignment:
Q  29 catatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  20517062 catatattatgcattgttcttaccaactgagctaaactc 20517024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 20565092 - 20565130
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  20565092 cttgcatatattatgcattgtccctaccaactgagctaa 20565130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 24592863 - 24592901
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  24592863 cttgcatatattatgcattgtccctaccaactgagctaa 24592901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 25395459 - 25395493
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgag 59  Q
    |||||||||||||||||||||| ||||||||||||    
T  25395459 cttgcatatattatgcattgttcctaccaactgag 25395493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 26999154 - 26999116
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||||||||| |||||||||||| ||||    
T  26999154 cttgcatatattatgcattgtctctaccaactgaactaa 26999116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 29133500 - 29133542
Alignment:
Q  24 tcttgcatatattatgcattgtttctaccaactgagctaaact 66  Q
    |||||||||| ||||||||||||  ||||||||||||||||||    
T  29133500 tcttgcatattttatgcattgttcataccaactgagctaaact 29133542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 29896311 - 29896353
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||||||||||||||| |||||||  |||||||    
T  29896311 cttgcatatattatgcattgtttctatcaactgaattaaactc 29896353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 30243294 - 30243256
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  30243294 cttgtatatattatgcattgtctctaccaactgagctaa 30243256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 34464426 - 34464468
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  34464426 cttgcatatattatgcattgtccataccaactgagctaaactc 34464468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 35685078 - 35685120
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  35685078 cttgcatatattatgcattgtccttaccaactgagctaaactc 35685120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 43117207 - 43117249
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  43117207 cttgcatatattatgcattgtccttaccaactgagctaaactc 43117249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 690831 - 690790
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||| |||||| ||| |||||||||||||||||    
T  690831 ttgcatatattatacattgtctcttccaactgagctaaactc 690790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 13490768 - 13490727
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||| |||||| |||| ||||||||||||||||    
T  13490768 ttgcatatattatacattgtctctatcaactgagctaaactc 13490727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 30799109 - 30799138
Alignment:
Q  29 catatattatgcattgtttctaccaactga 58  Q
    ||||||||||||||||||||||||||||||    
T  30799109 catatattatgcattgtttctaccaactga 30799138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 35451261 - 35451298
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  35451261 ttgcatatattatgtattgtctctaccaactgagctaa 35451298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 41668698 - 41668661
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||||  |||||||||||||||    
T  41668698 ttgcatatattatgcattgttcataccaactgagctaa 41668661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 40919376 - 40919417
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaact 66  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  40919376 cttgcatatattatgcattgttcctaccaactgagctaaact 40919417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 37015853 - 37015891
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  37015853 cttgcatatattatgcattgtctctaccaactgagctaa 37015891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 1230682 - 1230721
Alignment:
Q  29 catatattatgcattgtttctaccaactgagctaaactcg 68  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  1230682 catatattatgcattgttcctaccaactgagttaaactcg 1230721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 13286176 - 13286137
Alignment:
Q  24 tcttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  13286176 tcttgcatatattatgcattgtctataccaactgagctaa 13286137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 7553723 - 7553681
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||||||||||  |||||||||||| |||||||    
T  7553723 cttgcatatattatgcattgtccctaccaactgagttaaactc 7553681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 8717492 - 8717534
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  8717492 cttgcatatattatgcattgtccataccaactgagctaaactc 8717534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 11709030 - 11708992
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  11709030 cttgcatatattatgcattgtccctaccaactgagctaa 11708992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 12714387 - 12714429
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||||||||||  || |||||||||||||||||    
T  12714387 cttgcatatattatgcattgtcccttccaactgagctaaactc 12714429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 13575333 - 13575291
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||| |||||||||||  ||||||||||||||||||||    
T  13575333 cttgcatatgttatgcattgtccctaccaactgagctaaactc 13575291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 20469328 - 20469366
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  20469328 cttgcatatattatgcattgtttataccaactgatctaa 20469366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 29652262 - 29652220
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||||||  || ||||||||||||||||    
T  29652262 cttgcatatattatgcattgttcttatcaactgagctaaactc 29652220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 33445614 - 33445576
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  33445614 cttgtatatattatgcattgttcctaccaactgagctaa 33445576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 36018547 - 36018585
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  36018547 cttgcatatattatgcattgtctctaccaactaagctaa 36018585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 39821928 - 39821890
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  39821928 cttgcatatattatgcattgtccctaccaactgagctaa 39821890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 44019593 - 44019555
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  44019593 cttgcatatattatgcattgttcttaccaactgagctaa 44019555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 444168 - 444127
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaact 66  Q
    ||||||| ||||||||||||| | ||||||||||||||||||    
T  444168 cttgcatgtattatgcattgtctttaccaactgagctaaact 444127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 15167088 - 15167055
Alignment:
Q  31 tatattatgcattgtttctaccaactgagctaaa 64  Q
    |||||||||||||||| |||||||||||||||||    
T  15167088 tatattatgcattgttcctaccaactgagctaaa 15167055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 29908055 - 29908018
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagcta 62  Q
    |||||||||||||||||||||  |||||||||||||||    
T  29908055 cttgcatatattatgcattgtccctaccaactgagcta 29908018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 31336824 - 31336857
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactga 58  Q
    |||||||||||||||||||||| |||||||||||    
T  31336824 cttgcatatattatgcattgttcctaccaactga 31336857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 37750017 - 37750058
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||||||||||  || ||||||||||||||||    
T  37750017 ttgcatatattatgcattgttcatatcaactgagctaaactc 37750058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 1243760 - 1243800
Alignment:
Q  27 tgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||||||||| ||||||  |||||||    
T  1243760 tgcatatattatgcattgtttctacaaactgaattaaactc 1243800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 1254460 - 1254500
Alignment:
Q  27 tgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||||||||| ||||||  |||||||    
T  1254460 tgcatatattatgcattgtttctacaaactgaattaaactc 1254500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 3757973 - 3758013
Alignment:
Q  24 tcttgcatatattatgcattgtttctaccaactgagctaaa 64  Q
    |||| |||||||||||||||||| ||| |||||||||||||    
T  3757973 tcttacatatattatgcattgttcctatcaactgagctaaa 3758013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 33996112 - 33996080
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactga 58  Q
    |||||||||||||||||||| ||||||||||||    
T  33996112 ttgcatatattatgcattgtctctaccaactga 33996080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 35700413 - 35700445
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactga 58  Q
    |||||||||||||||||||| ||||||||||||    
T  35700413 ttgcatatattatgcattgtctctaccaactga 35700445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 59
Target Start/End: Original strand, 45970723 - 45970758
Alignment:
Q  24 tcttgcatatattatgcattgtttctaccaactgag 59  Q
    ||||||||||||||||||||||||||||||||||||    
T  45970723 tcttgcatatattatgcattgtttctaccaactgag 45970758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 21317355 - 21317393
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  21317355 cttgcatatattatgcattgtctctaccaactgagctaa 21317393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 2649750 - 2649791
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaact 66  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  2649750 cttgcatatattatgcattgtccctaccaactgagctaaact 2649791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 8495032 - 8494993
Alignment:
Q  24 tcttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  8495032 tcttgcatatattatgcattgtccctaccaactgagctaa 8494993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 12671764 - 12671807
Alignment:
Q  24 tcttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||| ||||||||||| | |||||||||||||||||||    
T  12671764 tcttgcatattttatgcattgtctataccaactgagctaaactc 12671807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 23154639 - 23154600
Alignment:
Q  24 tcttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  23154639 tcttgcatattttatgcattgtttcaaccaactgagctaa 23154600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 38812865 - 38812908
Alignment:
Q  24 tcttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||||||  ||||| ||||||||||||||    
T  38812865 tcttgcatatattatgcattgtccctaccgactgagctaaactc 38812908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 3299111 - 3299153
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||||||||||||  |||||||||| |||||||    
T  3299111 cttgcatatattatgcattgttttaaccaactgagttaaactc 3299153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 3936671 - 3936633
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  3936671 cttgcatatattatgcattgttcataccaactgagctaa 3936633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 11286798 - 11286836
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||||||||| |||||||||||| ||||    
T  11286798 cttgcatatattatgcattgtctctaccaactgaactaa 11286836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 17423194 - 17423228
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgag 59  Q
    ||||||||||||||||||||| |||||||||||||    
T  17423194 cttgcatatattatgcattgtctctaccaactgag 17423228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 18458788 - 18458754
Alignment:
Q  33 tattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||||||||||| |||||||    
T  18458788 tattatgcattgtttctaccaactgagttaaactc 18458754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 20403185 - 20403223
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  20403185 cttgcatatattatgcattgttcctatcaactgagctaa 20403223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 20799411 - 20799449
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  20799411 cttgcatatattatgcattgtccctaccaactgagctaa 20799449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 22164290 - 22164328
Alignment:
Q  29 catatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  22164290 catatattatgcattgttcctaccaactaagctaaactc 22164328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 27655775 - 27655737
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  27655775 cttgcatatattatgcattgtttctatcaactgaactaa 27655737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 28031856 - 28031814
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||| |||||||||||| | ||||||||||||||||||    
T  28031856 cttgcatattttatgcattgttccaaccaactgagctaaactc 28031814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 28435265 - 28435307
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  28435265 cttgcatatattatgcattgtccataccaactgagctaaactc 28435307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 34247484 - 34247442
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  34247484 cttgcatatattatgcattgtccttaccaactgagctaaactc 34247442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 41520998 - 41520964
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgag 59  Q
    ||||||||||||||||||||| |||||||||||||    
T  41520998 cttgcatatattatgcattgtctctaccaactgag 41520964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 50362156 - 50362194
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  50362156 cttgcatatattatgcattgtccctaccaactgagctaa 50362194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 54500609 - 54500575
Alignment:
Q  29 catatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||||| |||||||||||||||||    
T  54500609 catatattatgcattgtctctaccaactgagctaa 54500575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 55430640 - 55430598
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||| || |||||||||||| |||||||    
T  55430640 cttgcatatattatgcattattcctaccaactgagttaaactc 55430598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 14577525 - 14577566
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||||   |||||||||||||||||||    
T  14577525 ttgcatatattatgcattgtccttaccaactgagctaaactc 14577566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 16304115 - 16304156
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaact 66  Q
    |||||||||||||||||||||   ||||||||||||||||||    
T  16304115 cttgcatatattatgcattgtccataccaactgagctaaact 16304156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 42198594 - 42198631
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  42198594 ttgcatattttatgcattgtttataccaactgagctaa 42198631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 19997382 - 19997414
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactga 58  Q
    |||||||||||||||||||| ||||||||||||    
T  19997382 ttgcatatattatgcattgtctctaccaactga 19997414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 22279535 - 22279575
Alignment:
Q  23 gtcttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||||||   |||||||||||||||    
T  22279535 gtcttgcatatattatgcattgtccttaccaactgagctaa 22279575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 39669515 - 39669551
Alignment:
Q  27 tgcatatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  39669515 tgcatatattatgcaatgttcctaccaactgagctaa 39669551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 50376674 - 50376714
Alignment:
Q  27 tgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||| ||| ||||||||||||| |||||||    
T  50376674 tgcatatattatgcaatgtctctaccaactgagttaaactc 50376714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 11014277 - 11014234
Alignment:
Q  24 tcttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||||||| ||| |||||||||||||||||||||    
T  11014277 tcttgcatatattatgcactgtctctaccaactgagctaaactc 11014234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 14905421 - 14905475
Alignment:
Q  13 tgaacatcgggtcttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||| |||| ||||||||| | ||||||||||||||||||| |||||||    
T  14905421 tgaacatcggatcttacatatattaagtattgtttctaccaactgagttaaactc 14905475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 16533050 - 16533092
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||||||||||| |||||||| |||||||||||    
T  16533050 cttgcatatattatgcattgttcctaccaaccgagctaaactc 16533092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 44243913 - 44243875
Alignment:
Q  29 catatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  44243913 catatattatgcattgttcctaccaactgagctaaactc 44243875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 47961306 - 47961348
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||||| ||| |||||||||||||||||    
T  47961306 cttgcatatattatgcattgtctctgccaactgagctaaactc 47961348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 37045163 - 37045199
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagct 61  Q
    |||||||||||||||||||||| ||||||||||||||    
T  37045163 cttgcatatattatgcattgttcctaccaactgagct 37045199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 50533113 - 50533077
Alignment:
Q  27 tgcatatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||| |||||||||||||||||||||    
T  50533113 tgcatatattatgcaatgtttctaccaactgagctaa 50533077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 23171313 - 23171352
Alignment:
Q  24 tcttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  23171313 tcttgcatatactatgcattgtttttaccaactgagctaa 23171352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 3393585 - 3393627
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||||||  || ||||||||||||||||    
T  3393585 cttgcatatattatgcattgttcatatcaactgagctaaactc 3393627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 3528490 - 3528528
Alignment:
Q  29 catatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  3528490 catatattatacattgtttctatcaactgagctaaactc 3528528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 5503782 - 5503820
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  5503782 cttgtatattttatgcattgtttctaccaactgagctaa 5503820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 7925404 - 7925370
Alignment:
Q  29 catatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||||| |||||||||||||||||    
T  7925404 catatattatgcattgtctctaccaactgagctaa 7925370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 13234122 - 13234084
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  13234122 cttgcatatattatgcgttgttcctaccaactgagctaa 13234084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 21400040 - 21400078
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  21400040 cttgcatatattatgcattgtccctaccaactgagctaa 21400078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 28032328 - 28032286
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||||||| ||| ||| |||||||||||    
T  28032328 cttgcatatattatgcattgtttttactaaccgagctaaactc 28032286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 29233991 - 29234033
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||| ||||||||||| | |||||||||||||||||||    
T  29233991 cttgcatattttatgcattgtctataccaactgagctaaactc 29234033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 30561767 - 30561725
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||||||  |||||||| ||||||||||    
T  30561767 cttgcatatattatgcattgttcttaccaacttagctaaactc 30561725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 30795745 - 30795707
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  30795745 cttgcatatattatgcattgttcttaccaactgagctaa 30795707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 32497498 - 32497532
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgag 59  Q
    |||||||||||||||||||||| ||||||||||||    
T  32497498 cttgcatatattatgcattgttcctaccaactgag 32497532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 32950778 - 32950812
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgag 59  Q
    ||||||||||||||||||||||| |||||||||||    
T  32950778 cttgcatatattatgcattgtttataccaactgag 32950812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 34521207 - 34521249
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  34521207 cttgcatatattatgcattgtccataccaactgagctaaactc 34521249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 34632225 - 34632175
Alignment:
Q  13 tgaacatcgggtcttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    ||||| |||| ||||||||||||||| |||||| | |||||||||||||||    
T  34632225 tgaacctcggatcttgcatatattatacattgtctataccaactgagctaa 34632175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 36371061 - 36371095
Alignment:
Q  29 catatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||||| |||||||||||||||||    
T  36371061 catatattatgcattgtctctaccaactgagctaa 36371095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 48681950 - 48681988
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  48681950 cttgcatatattatgcattgttcataccaactgagctaa 48681988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 52441528 - 52441566
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  52441528 cttgcatatattatgcattgtctataccaactgagctaa 52441566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 14426 - 14393
Alignment:
Q  30 atatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||| |||||||||||||||    
T  14426 atatattatgcattgtttataccaactgagctaa 14393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 1864236 - 1864277
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaact 66  Q
    ||||||||||||||||||||| |||||||||| || ||||||    
T  1864236 cttgcatatattatgcattgtctctaccaactaagttaaact 1864277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 3431373 - 3431332
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||||||| || |||||||||||| |||||||    
T  3431373 ttgcatatattatgcattcttcctaccaactgagttaaactc 3431332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 12269001 - 12269034
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactga 58  Q
    |||||||||||||||||||||| |||||||||||    
T  12269001 cttgcatatattatgcattgttcctaccaactga 12269034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 13775628 - 13775665
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagcta 62  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  13775628 cttgcatatattatgcattgtctctactaactgagcta 13775665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 18166645 - 18166608
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||| | |||||||||||||||    
T  18166645 ttgcatatattatgcattgtctataccaactgagctaa 18166608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 24695602 - 24695561
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||| ||||||  |||||||||||||||||||    
T  24695602 ttgcatatattatgtattgttcataccaactgagctaaactc 24695561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 29741950 - 29741995
Alignment:
Q  24 tcttgcatatattatgcattgtttctaccaactgagctaaactcga 69  Q
    |||| |||||||||||| |||| ||||||||||||||||| |||||    
T  29741950 tcttacatatattatgcgttgtatctaccaactgagctaagctcga 29741995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 40214701 - 40214738
Alignment:
Q  30 atatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  40214701 atatattatgtattgtttctaccaactgagctcaactc 40214738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 5291107 - 5291139
Alignment:
Q  27 tgcatatattatgcattgtttctaccaactgag 59  Q
    |||||||||||||||||||| ||||||||||||    
T  5291107 tgcatatattatgcattgttcctaccaactgag 5291139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 25365012 - 25365052
Alignment:
Q  24 tcttgcatatattatgcattgtttctaccaactgagctaaa 64  Q
    |||||||||||||||||||||||  ||||||||||| ||||    
T  25365012 tcttgcatatattatgcattgttcttaccaactgagttaaa 25365052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 28455371 - 28455403
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactga 58  Q
    |||||||||||||||||||| ||||||||||||    
T  28455371 ttgcatatattatgcattgtctctaccaactga 28455403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 29441892 - 29441940
Alignment:
Q  19 tcgggtcttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||| |||||||||||| ||| |||||| |||| |||||||||||||||    
T  29441892 tcggatcttgcatatatcatgtattgttcctactaactgagctaaactc 29441940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 32864335 - 32864303
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactga 58  Q
    |||||||||||||||||||| ||||||||||||    
T  32864335 ttgcatatattatgcattgtctctaccaactga 32864303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 33229701 - 33229733
Alignment:
Q  27 tgcatatattatgcattgtttctaccaactgag 59  Q
    |||||||||||||||||||| ||||||||||||    
T  33229701 tgcatatattatgcattgttcctaccaactgag 33229733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 39916993 - 39916957
Alignment:
Q  30 atatattatgcattgtttctaccaactgagctaaact 66  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  39916993 atatattatgcattgtctctaccaactgagttaaact 39916957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 40618956 - 40618912
Alignment:
Q  23 gtcttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||||| | | ||||||||||| |||||||    
T  40618956 gtcttgcatatattatgcattatctttaccaactgagttaaactc 40618912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 30639443 - 30639485
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||| || ||||||||||||||||||||    
T  30639443 cttgcatatattatgcattattcctaccaactgagctaaactc 30639485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 32193876 - 32193918
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||||||  |||||||||||||||||||    
T  32193876 cttgcatatattatgcattgttcttaccaactgagctaaactc 32193918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 331903 - 331937
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgag 59  Q
    ||||||||||||||||||||| |||||||||||||    
T  331903 cttgcatatattatgcattgtctctaccaactgag 331937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 866302 - 866344
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||||||| ||  ||||||||||||||||||||    
T  866302 cttgcatatattatgcatcgtgcctaccaactgagctaaactc 866344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 1918475 - 1918517
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||||| | ||||||||||| |||||||    
T  1918475 cttgcatatattatgcattgtctataccaactgagttaaactc 1918517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 2105945 - 2105907
Alignment:
Q  29 catatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||| ||||||| |||||||||||    
T  2105945 catatattatgcattgtttttaccaaccgagctaaactc 2105907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 8809362 - 8809308
Alignment:
Q  13 tgaacatcgggtcttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||| |||| |||||||||||||||||||||||| || ||| ||| ||||||||    
T  8809362 tgaacctcggatcttgcatatattatgcattgtttttatcaattgaactaaactc 8809308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 10780124 - 10780162
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  10780124 cttgcatatattatgcattgtccctaccaactgagctaa 10780162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 21936050 - 21936092
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||| ||||||  |||||||||||||||||||    
T  21936050 cttgcatatattatgaattgttcttaccaactgagctaaactc 21936092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 24373727 - 24373769
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||||| |||||||| |||| |||||||    
T  24373727 cttgcatatattatgcattgtctctaccaattgagttaaactc 24373769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 32149182 - 32149144
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  32149182 cttgcatatattatgcattgttcttaccaactgagctaa 32149144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 33938696 - 33938734
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  33938696 cttgcatatattatgcattgttcataccaactgagctaa 33938734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 34701191 - 34701153
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||||| ||||||||||| ||||    
T  34701191 cttgcatatattatgcattgttcctaccaactgaactaa 34701153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 12028 - 12069
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||||||| | |||| ||||||||||||||||    
T  12028 ttgcatatattatgcattatctctatcaactgagctaaactc 12069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 12276249 - 12276286
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||||  |||||||||||||||    
T  12276249 ttgcatatattatgcattgttcttaccaactgagctaa 12276286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 29457220 - 29457183
Alignment:
Q  30 atatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||||||||||| || ||||||||||||||||||||    
T  29457220 atatattatgcatttttcctaccaactgagctaaactc 29457183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 20129031 - 20129003
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaa 54  Q
    |||||||||||||||||||||||||||||    
T  20129031 ttgcatatattatgcattgtttctaccaa 20129003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 54
Target Start/End: Original strand, 22203839 - 22203867
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaa 54  Q
    |||||||||||||||||||||||||||||    
T  22203839 ttgcatatattatgcattgtttctaccaa 22203867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 26587436 - 26587396
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaac 65  Q
    ||||||||||||||||||||||  ||| |||||||||||||    
T  26587436 cttgcatatattatgcattgttcttactaactgagctaaac 26587396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 1642379 - 1642341
Alignment:
Q  24 tcttgcatatattatgcattgtttctaccaactgagcta 62  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  1642379 tcttgcatatattatgcattgtttttaccaactgagcta 1642341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 18489093 - 18489135
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||||| | |||||||||||||||||||    
T  18489093 cttgcatatattatgcattgtctataccaactgagctaaactc 18489135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 18538652 - 18538610
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||||| |||||||||| ||||||||||    
T  18538652 cttgcatatattatgcattgtctctaccaacttagctaaactc 18538610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 17862022 - 17861981
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  17862022 ttgcatatattatgcattgtccctaccaactgagctaaactc 17861981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 27721693 - 27721730
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  27721693 ttgcatatattatgcattgttcctaccaactgagctaa 27721730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 10917373 - 10917333
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactgagctaaact 66  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  10917373 ttgcatatattatgcattgtttctaccaattgagttaaact 10917333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 58
Target Start/End: Original strand, 13150872 - 13150903
Alignment:
Q  27 tgcatatattatgcattgtttctaccaactga 58  Q
    ||||||||||||||||||||||||||||||||    
T  13150872 tgcatatattatgcattgtttctaccaactga 13150903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 20365488 - 20365531
Alignment:
Q  24 tcttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||| ||||||||||||||||| | ||||||||||||||||||    
T  20365488 tcttgtatatattatgcattgttccgaccaactgagctaaactc 20365531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 6489051 - 6489013
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  6489051 cttgcatatattatgcattgtccctaccaactgagctaa 6489013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 11017220 - 11017178
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||| |  ||||||||||||||||||||    
T  11017220 cttgcatatattatgcattatccctaccaactgagctaaactc 11017178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 13409472 - 13409430
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||||| | ||| |||||||||||||||    
T  13409472 cttgcatatattatgcattgtctttactaactgagctaaactc 13409430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 15889455 - 15889417
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  15889455 cttgcatatattatgcattgtccctaccaactgagctaa 15889417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 18278276 - 18278318
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||||||  ||||||||||| |||||||    
T  18278276 cttgcatatattatgcattgttcttaccaactgagttaaactc 18278318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 18789080 - 18789042
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||| ||||||||||| |||||||||||||||||    
T  18789080 cttgcatattttatgcattgtctctaccaactgagctaa 18789042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 58
Target Start/End: Complemental strand, 20206560 - 20206526
Alignment:
Q  24 tcttgcatatattatgcattgtttctaccaactga 58  Q
    |||||||||||||||||||||| ||||||||||||    
T  20206560 tcttgcatatattatgcattgtctctaccaactga 20206526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 27903157 - 27903115
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||||||  |||||||||| ||||||||    
T  27903157 cttgcatatattatgcattgttcataccaactgaactaaactc 27903115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 29962402 - 29962364
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  29962402 cttgcatatattatacattgtttctatcaactgagctaa 29962364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 30012396 - 30012434
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  30012396 cttgcatatattatacattgtttctatcaactgagctaa 30012434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 31591554 - 31591592
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  31591554 cttgcatataatatgcattgttcctaccaactgagctaa 31591592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 31602842 - 31602880
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  31602842 cttgcatatattatgcattgttcataccaactgagctaa 31602880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 34206271 - 34206229
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||||| | ||||||||||| |||||||    
T  34206271 cttgcatatattatgcattgtctttaccaactgagttaaactc 34206229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 34436895 - 34436857
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  34436895 cttgcatatattatgcattgtccctaccaactgagctaa 34436857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 37614444 - 37614482
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  37614444 cttgcatatattatgcgttgtctctaccaactgagctaa 37614482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 37791180 - 37791218
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||| ||||||||||||||||| ||||    
T  37791180 cttgcatatattatgcgttgtttctaccaactgaactaa 37791218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 1669598 - 1669635
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||||  |||||||||||||||    
T  1669598 ttgcatatattatgcattgttcttaccaactgagctaa 1669635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 5485229 - 5485192
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  5485229 ttgcatatattatgcattgtccctaccaactgagctaa 5485192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 19248522 - 19248485
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactgagctaa 63  Q
    |||||||||||||||||||| | |||||||||||||||    
T  19248522 ttgcatatattatgcattgtctataccaactgagctaa 19248485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 37054291 - 37054328
Alignment:
Q  30 atatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  37054291 atatattatgcattgtccctaccaactgagctaaactc 37054328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 11666042 - 11666014
Alignment:
Q  30 atatattatgcattgtttctaccaactga 58  Q
    |||||||||||||||||||||||||||||    
T  11666042 atatattatgcattgtttctaccaactga 11666014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 54
Target Start/End: Original strand, 39431143 - 39431171
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaa 54  Q
    |||||||||||||||||||||||||||||    
T  39431143 ttgcatatattatgcattgtttctaccaa 39431171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 41083562 - 41083602
Alignment:
Q  27 tgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    |||||| |||||||| ||| |||||||||||||||||||||    
T  41083562 tgcataaattatgcaatgtctctaccaactgagctaaactc 41083602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 31171 - 31215
Alignment:
Q  24 tcttgcatatattatgcattgtttctaccaactgagctaaactcg 68  Q
    ||||||||||||||||||||||   ||||||||||||||||||||    
T  31171 tcttgcatatattatgcattgtccataccaactgagctaaactcg 31215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 14203 - 14245
Alignment:
Q  25 cttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||||||  ||||||||||| |||||||    
T  14203 cttgcatatattatgcattgttcataccaactgagttaaactc 14245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1320 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 1782 - 1815
Alignment:
Q  31 tatattatgcattgtttctaccaactgagctaaa 64  Q
    |||||||||||||||| |||||||||||||||||    
T  1782 tatattatgcattgttcctaccaactgagctaaa 1815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 239850 - 239809
Alignment:
Q  26 ttgcatatattatgcattgtttctaccaactgagctaaactc 67  Q
    ||||||||||||||||||||   |||||||||||||||||||    
T  239850 ttgcatatattatgcattgtccttaccaactgagctaaactc 239809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 25737 - 25701
Alignment:
Q  27 tgcatatattatgcattgtttctaccaactgagctaa 63  Q
    ||||||||||||||||||||  |||||||||||||||    
T  25737 tgcatatattatgcattgttcttaccaactgagctaa 25701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University