View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18166_low_8 (Length: 369)
Name: NF18166_low_8
Description: NF18166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18166_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 342
Target Start/End: Original strand, 52484207 - 52484507
Alignment:
| Q |
19 |
tttggtcgtttttgggtggaccattgaagcgagaagctagagctatggtacctatgacaaggtttacaatgatgaaaatagaagaaggtgtgaaccatgt |
118 |
Q |
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| T |
52484207 |
tttggtcgtttttgggtggaccattgaagcgagaagctagagctatggtacctatgacaaggtttacaatgatgaaaatagaagaaggtgtgaaccatgt |
52484306 |
T |
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| Q |
119 |
tgctatgaaagttgttgggtctgccatcgttgttaatttcttaatttggagggtttttgcgttgagatcgagcttcaacactgactgaagagtgaagaca |
218 |
Q |
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| T |
52484307 |
tgctatgaaagttgttgggtctgccatcgttgttaatttcttaatttggagggtttttgcgttga----gaccttcaac----actgaagagtgaa---- |
52484394 |
T |
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| Q |
219 |
atgtagggtgggggtgtaaatagagaaaggaaaatcaccatttacgtcttagtcatgtagtcagaagaaaggag-aaaaaagttgataaataaataaata |
317 |
Q |
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| T |
52484395 |
-----------gggtgtaaatagagaaaggaaaatcaccatttacgtc-tagtcatgtagtcagaagaaaggagaaaaaaagttgataaataaataaata |
52484482 |
T |
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| Q |
318 |
tcatgggggtggggaacttgtttct |
342 |
Q |
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| T |
52484483 |
tcatgggggtggggaacttgtttct |
52484507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 52464891 - 52464962
Alignment:
| Q |
44 |
gaagcgagaagctagagctatggtacctatgacaaggtttacaatgatgaaaatagaagaaggtgtgaacca |
115 |
Q |
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| T |
52464891 |
gaagcgagaaacgagagcaatggtaccaatgacaaggttaacaaagatgaaaagaggagagggtgtgaacca |
52464962 |
T |
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