View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18166_low_9 (Length: 367)
Name: NF18166_low_9
Description: NF18166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18166_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 120; Significance: 3e-61; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 9 - 166
Target Start/End: Complemental strand, 33226422 - 33226259
Alignment:
| Q |
9 |
caaagggagaagagaaatactatgatcacaaagcagatttctattggtgcagattttaaattaccaagtaagaaaatatttgagcta-gtagac-----a |
102 |
Q |
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| T |
33226422 |
caaagggagaaaagaaatactatgatcacaaagcagatttctataggtgcagattttaaattaccaagtaagaaaatatttgagctatatatacccttaa |
33226323 |
T |
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| Q |
103 |
aaacttgactgaattgagaacgcccctatttttaacaaaatgaacattttatctcctagtagac |
166 |
Q |
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| T |
33226322 |
aaacttgactgaattgagaacgcccctatttttaacaaaatgaacattttatctcctagtagac |
33226259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 236 - 347
Target Start/End: Complemental strand, 33226189 - 33226079
Alignment:
| Q |
236 |
tcattgcatggctttagatcacggtgaatgatgccatttgcatgtaaatattccattgcttgagaaatatctaaagtaaaacttagataaatactctctt |
335 |
Q |
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| T |
33226189 |
tcattgcatggctttagatcacggtgaattatgtcatttgcatgtaaatattccattgcttaagaaatatcaaaagtaaaacttagataaatactctc-t |
33226091 |
T |
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| Q |
336 |
aagtgtttctaa |
347 |
Q |
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|||||||||||| |
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| T |
33226090 |
aagtgtttctaa |
33226079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 248 - 320
Target Start/End: Original strand, 33227111 - 33227183
Alignment:
| Q |
248 |
tttagatcacggtgaatgatgccatttgcatgtaaatattccattgcttgagaaatatctaaagtaaaactta |
320 |
Q |
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| T |
33227111 |
tttagatcacgatgaatgatgtcatttgcatgtaaatattccattgcttaagaaatatcaaaagtaaaactta |
33227183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 33226962 - 33227027
Alignment:
| Q |
102 |
aaaacttgactgaattgagaac-gcccctatttttaacaaaatgaacattttatctcctagtagac |
166 |
Q |
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| T |
33226962 |
aaaacttgactaaattgggaaccgtccgtatttttaacaaaatgaacattttatctcctagtagac |
33227027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 244 - 320
Target Start/End: Complemental strand, 10528166 - 10528090
Alignment:
| Q |
244 |
tggctttagatcacggtgaatgatgccatttgcatgtaaatattccattgcttgagaaatatctaaagtaaaactta |
320 |
Q |
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| T |
10528166 |
tggctttagatcacggtgaatgatgtcatttgcatgtaaatactccatagcttgagaaatatcaaaagcaaaactta |
10528090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 10528694 - 10528746
Alignment:
| Q |
9 |
caaagggagaagagaaatactatgatcacaaagcagatttctattggtgcaga |
61 |
Q |
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| T |
10528694 |
caaagggagaagagaaatactatgatcacaaagcagatttctattggtgcaga |
10528746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 10528316 - 10528251
Alignment:
| Q |
102 |
aaaacttgactgaattgagaac-gcccctatttttaacaaaatgaacattttatctcctagtagac |
166 |
Q |
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||||||||||| ||||| |||| | || |||||||||||||||||||||||||||||||||||||| |
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| T |
10528316 |
aaaacttgactaaattgggaaccgtccgtatttttaacaaaatgaacattttatctcctagtagac |
10528251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 306
Target Start/End: Complemental strand, 7469773 - 7469712
Alignment:
| Q |
245 |
ggctttagatcacggtgaatgatgccatttgcatgtaaatattccattgcttgagaaatatc |
306 |
Q |
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||||| |||||||||||||| || ||||||||||| | ||||||||||||||| |||||||| |
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| T |
7469773 |
ggcttgagatcacggtgaattattccatttgcatgcagatattccattgcttgtgaaatatc |
7469712 |
T |
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