View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18167_high_1 (Length: 273)
Name: NF18167_high_1
Description: NF18167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18167_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 82 - 256
Target Start/End: Complemental strand, 54456645 - 54456471
Alignment:
| Q |
82 |
ggattttcagattgaattacttggaagagatcgatcagggatatatgtgacggtgggaagagaaggctgcatggttgatggattgatgttgtcgatagca |
181 |
Q |
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| T |
54456645 |
ggattttcagattgaattacttggaagagatcggtcagggagatatgtgacggtgggatgagaaggctgcatggttgatggattgatgttatcgatagca |
54456546 |
T |
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| Q |
182 |
cgaaatttgaactccattgaacaaacacttgaaactataaataaatattcagagaaacaaaactggtattaatta |
256 |
Q |
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| T |
54456545 |
cggaatttgaactccattgaacaaaaacttgaaactataaataaatattcagagaaacaaaactggtattaatta |
54456471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 82 - 224
Target Start/End: Complemental strand, 54056330 - 54056188
Alignment:
| Q |
82 |
ggattttcagattgaattacttggaagagatcgatcagggatatatgtgacggtgggaagagaaggctgcatggttgatggattgatgttgtcgatagca |
181 |
Q |
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| T |
54056330 |
ggattttcctattgaattacttggaagagatcgatcagggagatatgtgacggtgggaagagaaggctgcatggttgatggattgatgttgtcgatagca |
54056231 |
T |
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| Q |
182 |
cgaaatttgaactccattgaacaaacacttgaaactataaata |
224 |
Q |
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| T |
54056230 |
cgaaatttgaactccattgaacaaacacttgaaactgtaaata |
54056188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 52322202 - 52322251
Alignment:
| Q |
153 |
tggttgatggattgatgttgtcgatagcacgaaatttgaactccattgaa |
202 |
Q |
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| T |
52322202 |
tggttgatggattgatgttgtcgatagcacgatatttgaactccattgaa |
52322251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 15043438 - 15043479
Alignment:
| Q |
179 |
gcacgaaatttgaactccattgaacaaacacttgaaactata |
220 |
Q |
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| T |
15043438 |
gcacgaaatttgaactccattgaagaaatacttgaaactata |
15043479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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