View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18167_high_7 (Length: 302)
Name: NF18167_high_7
Description: NF18167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18167_high_7 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 30605607 - 30605322
Alignment:
| Q |
17 |
agaacctgtgcaggagtggccctgaacacctgctttacattgttaacagaagctctgtcatttgtcttgaacactatgtactcaaatgcttcttcctctc |
116 |
Q |
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| T |
30605607 |
agaacctctgcaggagtggccctgaacacctactttacattgttaacagaagctccgtcatttgtcttgaacactatgtactcaaatgcttcttcctctc |
30605508 |
T |
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| Q |
117 |
cagcttgctgcgccaccacaaagttctgtggtaccaccaccaactgtccctttctcacccagtcgtcgaacacggtgtttccttcacagttcactatcct |
216 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30605507 |
cagcttgctgcaccaccacaaagttctgtggtaccaccaccatctgtccctttctcacccagtcgtcgaacacggcgtttccttcacagttcactatcct |
30605408 |
T |
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| Q |
217 |
aactcttccttctcctcttaggacgtacattaggctgttggcgttcacggtccagtgtggagcatatataccattctgcatttata |
302 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30605407 |
aactcttccttctcctgttagggcgtacattaggctgttggcgttcacggtccagtgtggagcatatataccattctgcatttata |
30605322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 297
Target Start/End: Original strand, 32252758 - 32253038
Alignment:
| Q |
17 |
agaacctgtgcaggagtggccctgaacacctgctttacattgttaacagaagctctgtcatttgtcttgaacactatgtactcaaatgcttcttcctctc |
116 |
Q |
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||||||| ||||| ||||||||||| |||||||| |||| | |||||| |||| ||| |||||||||||||| | ||||||||||||||||| | || |
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| T |
32252758 |
agaacctcagcaggggtggccctgaatacctgcttcacatggctaacagcagctaagtcgtttgtcttgaacaccacatactcaaatgcttcttcatttc |
32252857 |
T |
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| Q |
117 |
cagcttgctgcgccaccacaaagttctgtggtaccaccaccaactgtccctttctcacccagtcgtcgaacacggtgtttccttcacagttcactatcct |
216 |
Q |
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| T |
32252858 |
cggcttgttgcgccaccacaaagttttgtggcaccaccaacaactgtcctcttcttacattgtcgtcgaacactgcgttaccttggcagttcactatcct |
32252957 |
T |
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| Q |
217 |
aactcttccttctcctcttaggacgtacattaggctgttggcgttcacggtccagtgtggagcatatataccattctgcat |
297 |
Q |
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| T |
32252958 |
aactcttccttgtcctcttatcacgtacaataggctgttggcgttgatgttccagtgtggagcatatataccattctgcat |
32253038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 32 - 294
Target Start/End: Original strand, 32248023 - 32248285
Alignment:
| Q |
32 |
gtggccctgaacacctgctttacattgttaacagaagctctgtcatttgtcttgaacactatgtactcaaatgcttcttcctctccagcttgctgcgcca |
131 |
Q |
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|||||||||||||||||||| |||| |||||||| |||| ||| ||||||||||| || | ||||| ||||||||||| | || ||||| | ||||| |
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| T |
32248023 |
gtggccctgaacacctgcttcacatggttaacagcagctaggtcgtttgtcttgaaaaccacatactctaatgcttcttcgttccctgcttgttccgcca |
32248122 |
T |
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| Q |
132 |
ccacaaagttctgtggtaccaccaccaactgtccctttctcacccagtcgtcgaacacggtgtttccttcacagttcactatcctaactcttccttctcc |
231 |
Q |
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|||| ||||| ||||| ||||||| |||||||||| |||| || ||| |||||||| | ||| |||| ||||||||||||||||||||||||| ||| |
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| T |
32248123 |
ccacgaagttttgtggcaccaccaacaactgtccccttcttacattgtcatcgaacaccgcgttgccttggcagttcactatcctaactcttccttgtcc |
32248222 |
T |
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| Q |
232 |
tcttaggacgtacattaggctgttggcgttcacggtccagtgtggagcatatataccattctg |
294 |
Q |
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| T |
32248223 |
tctaatcacgtacaaaaggctgttggcgttgatgttccagtgtggagcatatatgccattctg |
32248285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 32 - 294
Target Start/End: Original strand, 32242193 - 32242455
Alignment:
| Q |
32 |
gtggccctgaacacctgctttacattgttaacagaagctctgtcatttgtcttgaacactatgtactcaaatgcttcttcctctccagcttgctgcgcca |
131 |
Q |
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|||||||||||||||||||| |||| |||||||| |||| ||| ||||||||||| || | ||||| ||||||||||| | || ||||| | ||||| |
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| T |
32242193 |
gtggccctgaacacctgcttcacatggttaacagcagctaggtcgtttgtcttgaaaaccacatactctaatgcttcttcgttccctgcttgttccgcca |
32242292 |
T |
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| Q |
132 |
ccacaaagttctgtggtaccaccaccaactgtccctttctcacccagtcgtcgaacacggtgtttccttcacagttcactatcctaactcttccttctcc |
231 |
Q |
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|||| ||||| ||||| ||||||| |||||||||| |||| || ||| || ||||| | ||| |||| ||||||||||||||||||||||||| ||| |
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| T |
32242293 |
ccacgaagttttgtggcaccaccaacaactgtccccttcttacattgtcatcaaacactgcgttaccttggcagttcactatcctaactcttccttgtcc |
32242392 |
T |
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| Q |
232 |
tcttaggacgtacattaggctgttggcgttcacggtccagtgtggagcatatataccattctg |
294 |
Q |
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| T |
32242393 |
tctaatcacgtacaaaaggctgttggcgttgatgttccagtgtggagcatatatgccattctg |
32242455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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