View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18167_low_1 (Length: 566)
Name: NF18167_low_1
Description: NF18167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18167_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 82 - 547
Target Start/End: Complemental strand, 48926758 - 48926297
Alignment:
| Q |
82 |
taaattattaaatggatgagagaggaaatggagttatgagaaaagnnnnnnnnnnngtgtgttgttgagtgttgaaagcattataaatggtgtaagggct |
181 |
Q |
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| T |
48926758 |
taaattattaaatggatgagagaggaaatggagttttgagaaaagaaaaagt----gtgtgttgttgagtgttgaaagcattgtaaatggtggaagggct |
48926663 |
T |
|
| Q |
182 |
actcatttgaatttgatacggtgataacacttaaaccggacatcacctttatatcttccatcttcgttccatgaccatgacactctcacgatcattcaga |
281 |
Q |
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| T |
48926662 |
acttatttgaatttgatacggtgataacacttaaaccggacatcacctttatatcttccatcttcgttccatgaccatgacactctcacgatcattcaga |
48926563 |
T |
|
| Q |
282 |
agattccccaatctttttccactctctaaatcaacttcacattttgaatcacccaccgttcaattcatccaaaacccatctcggccactcaaattccaca |
381 |
Q |
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| T |
48926562 |
agatttcccaatctttttccactctctaaatcaacttcacattttgaatcacccacggttcaattcatccaaaacccatctcggtcactcaaattccaca |
48926463 |
T |
|
| Q |
382 |
ttttcccatttcacacatcacttcttcataaacccaacaacccacatgccgaaactatctgcagaatcctttcaaccacacccgaatcacctgtcgacgt |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48926462 |
ttttcccatttcacacatcacttcttcataaacccaacaacccacatgccgaaactatctgcagaatcctttcaaccacacccgaatcacctgtcgacgt |
48926363 |
T |
|
| Q |
482 |
ctctcttcgcaactttccggtggaagtctcaccggagctcgtcgttgctgtcttgaacaagctcag |
547 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48926362 |
ctctcttcgcaactttccggtggaagtctcaccggagctcgtcgttgctgtcttgaacaagctcag |
48926297 |
T |
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