View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18167_low_2 (Length: 376)
Name: NF18167_low_2
Description: NF18167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18167_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 23 - 361
Target Start/End: Complemental strand, 44069401 - 44069063
Alignment:
| Q |
23 |
agtactaagcaaaacggagggagaaggttgttatcagatggatttccatattggctttcagggtcagatagaaagcttcttcaggcactaccggggtcag |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44069401 |
agtactaagcaaaacggagggagaaggttgttatcagatggattttcatattggctttcagggtcagatagaaagcttcttcaggcaacaccggggtcag |
44069302 |
T |
|
| Q |
123 |
ggacaggaccaagagctgatattgtggttgcacaagatggaagtgggaactataagacaatatctgagggtgtggctgcagctgctaagcttagtggaaa |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44069301 |
ggacaggaccaagagctgatattgtggttgcacaagatggaagtgggaactataagacaatatctgagggtgtggctgcagctgctaagcttagtggaaa |
44069202 |
T |
|
| Q |
223 |
agggagagtggttattcatctgaaagcaggtgtttataaagagaatattgatatcaaaaggacagtgtcaaatttaatgatatttggagatggaatggat |
322 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44069201 |
agggagagtggttattcatctgaaagcaggtatttataaagagaatattgatatcaaaagcacagtgtcaaatttaatgatatttggagatggaatggat |
44069102 |
T |
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| Q |
323 |
tctactattgttactggtaatcaaaatgctatagatggt |
361 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |
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| T |
44069101 |
tctactagtgttactggtaatcaaaatgctatagatggt |
44069063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 23 - 361
Target Start/End: Original strand, 44085801 - 44086139
Alignment:
| Q |
23 |
agtactaagcaaaacggagggagaaggttgttatcagatggatttccatattggctttcagggtcagatagaaagcttcttcaggcactaccggggtcag |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
44085801 |
agtactaagcaaaacggagggagaaggttgttatcagatggatttccatattggctttcagggtcagatagaaagcttcttcaggcaacaccgggttcag |
44085900 |
T |
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| Q |
123 |
ggacaggaccaagagctgatattgtggttgcacaagatggaagtgggaactataagacaatatctgagggtgtggctgcagctgctaagcttagtggaaa |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
44085901 |
ggacaggaccaagagctgatattgtggttgcacaagatggaagtgggaactataagacaatatctgacggtgtggctgcagctgctaagcttagtgggaa |
44086000 |
T |
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| Q |
223 |
agggagagtggttattcatctgaaagcaggtgtttataaagagaatattgatatcaaaaggacagtgtcaaatttaatgatatttggagatggaatggat |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44086001 |
agggagagtggttattcatctgaaagcaggtgtttataaagagaatatcgatatcaaaaggacaatgtcaaatttaatgatatttggagatggaatggat |
44086100 |
T |
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| Q |
323 |
tctactattgttactggtaatcaaaatgctatagatggt |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
44086101 |
tctactattgttactggtaatcaaaatgctatagatggt |
44086139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 23 - 361
Target Start/End: Complemental strand, 44094650 - 44094312
Alignment:
| Q |
23 |
agtactaagcaaaacggagggagaaggttgttatcagatggatttccatattggctttcagggtcagatagaaagcttcttcaggcactaccggggtcag |
122 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44094650 |
agtactaagcaaaacggagggagaaggttgttatcagatggatttccatattggctttcagggtcagatagaaagcttcttcaggcaacaccggggtcag |
44094551 |
T |
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| Q |
123 |
ggacaggaccaagagctgatattgtggttgcacaagatggaagtgggaactataagacaatatctgagggtgtggctgcagctgctaagcttagtggaaa |
222 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44094550 |
ggataggaccaagagctgatattgtggttgcacaagatggaagtgggaactataagacaatatctgagggtgtggctgcagctgctaagcttagtggaaa |
44094451 |
T |
|
| Q |
223 |
agggagagtggttattcatctgaaagcaggtgtttataaagagaatattgatatcaaaaggacagtgtcaaatttaatgatatttggagatggaatggat |
322 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| | ||||||| |||||||||||||| ||||||||||||||| |
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| T |
44094450 |
agggagagtggttattcatctgaaagcaggtatttataaagagaatgttgatatcaagaagacagtgaagaatttaatgatattcggagatggaatggat |
44094351 |
T |
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| Q |
323 |
tctactattgttactggtaatcaaaatgctatagatggt |
361 |
Q |
| |
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||||||||||||||||| ||||| ||||||||||||||| |
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| T |
44094350 |
tctactattgttactggcaatcataatgctatagatggt |
44094312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 44085704 - 44085748
Alignment:
| Q |
23 |
agtactaagcaaaacggagggagaaggttgttatcagatggattt |
67 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44085704 |
agtactaagcaaaacggagggagaaggttgttatcagatggattt |
44085748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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