View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18167_low_3 (Length: 356)
Name: NF18167_low_3
Description: NF18167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18167_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 75 - 335
Target Start/End: Complemental strand, 3608835 - 3608573
Alignment:
| Q |
75 |
taatgtctcacaagctctttatatataaagcatctcatgtatt-attcaatatattttgatcattataattttctatgaattttactttaactataaagc |
173 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3608835 |
taatgtctcacaagctctttatatataaagcatctcatgtattcattcaatatattttgatcattataattttctatgaattttactttaactataaagc |
3608736 |
T |
|
| Q |
174 |
tcttttatctcnnnnnnnnnn-cttatactcaaaatcttaatacatattactcatacttgatatggttgtaataaatcacattttcttattgatgatagt |
272 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3608735 |
tcttttatctctttttttttttcttatactcaaaatcttaatacatattactcatacttgatatggttgtaataaatcacattttcttattgatgatagt |
3608636 |
T |
|
| Q |
273 |
attccacatttgttccaaaccgatcatttcgagctccaagtttacaaaggaaatgcatgtagg |
335 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3608635 |
attccacatttgttccaaaccgatcatctcgagctccaagtttacaaaggaaatgcatgtagg |
3608573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 28461141 - 28461174
Alignment:
| Q |
128 |
ttttgatcattataattttctatgaattttactt |
161 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
28461141 |
ttttgatcaatataattttctatgaattttactt |
28461174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 34323826 - 34323859
Alignment:
| Q |
125 |
atattttgatcattataattttctatgaatttta |
158 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
34323826 |
atattttgatcaatataattttctatgaatttta |
34323859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 39994998 - 39995030
Alignment:
| Q |
128 |
ttttgatcattataattttctatgaattttact |
160 |
Q |
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||||||||| ||||||||||||||||||||||| |
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| T |
39994998 |
ttttgatcaatataattttctatgaattttact |
39995030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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