View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18168_high_20 (Length: 312)
Name: NF18168_high_20
Description: NF18168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18168_high_20 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 89 - 312
Target Start/End: Original strand, 33731340 - 33731563
Alignment:
| Q |
89 |
tgacacatcgtgaagaatcaaattgattcattaatatatgtagtcatataccaaatatttccacgagattcgcgttcaattttgtttattgcaatgaatc |
188 |
Q |
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| T |
33731340 |
tgacacatcgtgaagaatcaaattgattcattaatatatgtagtcatataccaaatatttccacgagattcgcgttcaattttgtttattgcaatgaatc |
33731439 |
T |
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| Q |
189 |
agaaaacaacaaaatttgatactgtcttaagagattacactgacagagtgaatcttatgaatatatagatgcatgtgccataaactgccaccctaagcca |
288 |
Q |
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| T |
33731440 |
agaaaacaacaaaatttgatactgtcttaagagattacactgacagagtgaatcttatgattatatagatgcatgtgccataaactgccaccctaagcca |
33731539 |
T |
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| Q |
289 |
catcacagatctaatcaagattct |
312 |
Q |
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| T |
33731540 |
catcacagatctaatcaagattct |
33731563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 33731285 - 33731340
Alignment:
| Q |
9 |
tcgaagaatattaatgattattttacaatcgtcgcagagagaatttaaactatgtcat |
66 |
Q |
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| T |
33731285 |
tcgaataatattaatgattattttacaatcgtcgcataaagaatt--aactatgtcat |
33731340 |
T |
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