View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18168_high_26 (Length: 270)

Name: NF18168_high_26
Description: NF18168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18168_high_26
NF18168_high_26
[»] chr1 (2 HSPs)
chr1 (19-270)||(36755179-36755430)
chr1 (121-246)||(10649623-10649748)
[»] chr2 (1 HSPs)
chr2 (86-190)||(18114692-18114796)
[»] chr6 (1 HSPs)
chr6 (62-269)||(33546133-33546345)
[»] chr4 (2 HSPs)
chr4 (84-193)||(24715975-24716089)
chr4 (112-238)||(1185828-1185954)
[»] chr7 (1 HSPs)
chr7 (82-168)||(10677300-10677391)
[»] chr5 (2 HSPs)
chr5 (139-190)||(15990892-15990943)
chr5 (40-69)||(25954561-25954590)
[»] chr8 (2 HSPs)
chr8 (175-221)||(28458495-28458541)
chr8 (16-97)||(28458359-28458439)


Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 36755179 - 36755430
Alignment:
Q  19 actttgatggaagctgatcaattttgtcttcttctaaagaaatgtcgcttttcaagttctgcaatattgtttgtcttcttctgaccacgtgcaaaacaaa 118  Q
    ||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36755179 actttgatggacgctgatcagttttgtcctcttctaaagaaatgtcgcttttcaagttctgcaatattgtttgtcttcttctgaccacgtgcaaaacaaa 36755278  T
Q  119 gcttttcaaaaccaaatagaatgcaacagattattccaaaagaagcaaaagaaacctctagtactattcaacagagtcatccattagaagcagagctttc 218  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  36755279 gcttttcaaaggcaaatagaatgcaacagattattccaaaagaagcaaaagaaacctctagtactattcaacatagtcatccattagaagcaaagctttc 36755378  T
Q  219 aaatctattcaaaacttctcaaggaagacttatgcgctgacaatttttcaac 270  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36755379 aaatctattcaaaacttctcaaggaagacttatgcgctggcaatttttcaac 36755430  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 246
Target Start/End: Original strand, 10649623 - 10649748
Alignment:
Q  121 ttttcaaaaccaaatagaatgcaacagattattccaaaagaagcaaaagaaacctctagtactattcaacagagtcatccattagaagcagagctttcaa 220  Q
    ||||||||  |||| |||||||||   || ||||||||||||||||| ||   |||| ||| ||||||||| | | |||||| ||| ||| |||||| ||    
T  10649623 ttttcaaaggcaaagagaatgcaatgcatcattccaaaagaagcaaatgatctctctggtattattcaacaaaattatccatcagaggcaaagcttttaa 10649722  T
Q  221 atctattcaaaacttctcaaggaaga 246  Q
    | ||| | ||| ||||||||||||||    
T  10649723 acctaattaaagcttctcaaggaaga 10649748  T

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Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 86 - 190
Target Start/End: Complemental strand, 18114796 - 18114692
Alignment:
Q  86 tgtttgtcttcttctgaccacgtgcaaaacaaagcttttcaaaaccaaatagaatgcaacagattattccaaaagaagcaaaagaaacctctagtactat 185  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18114796 tgtttgtcttcttctgaccacgtgcaaaacaaagcttttcaaaggcaaatagaatgcaacagattattccaaaagaagcaaaagaaacctctagtactat 18114697  T
Q  186 tcaac 190  Q
    |||||    
T  18114696 tcaac 18114692  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 269
Target Start/End: Complemental strand, 33546345 - 33546133
Alignment:
Q  62 gtcgcttttcaagttctgcaatattgtttgtcttcttctgaccacgtgca-----aaacaaagcttttcaaaaccaaatagaatgcaacagattattcca 156  Q
    ||||| || |||||| |||| ||||||||||||||||||||||| |||||     |||||||| ||||||||  || | ||||| ||||| || ||||||    
T  33546345 gtcgcattccaagttatgcagtattgtttgtcttcttctgaccatgtgcagaaacaaacaaagtttttcaaatgcatagagaatacaacatatcattcca 33546246  T
Q  157 aaagaagcaaaagaaacctctagtactattcaacagagtcatccattagaagcagagctttcaaatctattcaaaacttctcaaggaagacttatgcgct 256  Q
    |||||| || |  ||||||||| ||||||||||  || | ||||||||||  || | |||||||| ||  ||||| |||||||||||||| ||||| | |    
T  33546245 aaagaatcatagaaaacctctattactattcaattgaattatccattagagacaaaactttcaaacctgatcaaagcttctcaaggaagatttatgtgtt 33546146  T
Q  257 gacaatttttcaa 269  Q
    |||| || |||||    
T  33546145 gacacttcttcaa 33546133  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 193
Target Start/End: Original strand, 24715975 - 24716089
Alignment:
Q  84 attgtttgtcttcttctgaccacgtgca-----aaacaaagcttttcaaaaccaaatagaatgcaacagattattccaaaagaagcaaaagaaacctcta 178  Q
    |||||| |||||||||||||||||||||     ||||||||  |||||||  |||| ||||| |||| ||| ||||||||||||| ||||||  ||||||    
T  24715975 attgttcgtcttcttctgaccacgtgcagaaataaacaaagaatttcaaagtcaaagagaattcaactgatcattccaaaagaagtaaaagatccctcta 24716074  T
Q  179 gtactattcaacaga 193  Q
    ||| |||||||||||    
T  24716075 gtaatattcaacaga 24716089  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 238
Target Start/End: Original strand, 1185828 - 1185954
Alignment:
Q  112 aaacaaagcttttcaaaaccaaatagaatgcaacagattattccaaaagaagcaaaagaaacctctagtactattcaacagagtcatccattagaagcag 211  Q
    |||||||| |||| |||  |||| ||||| |||| ||| ||||  ||||||| ||| |||||||||| ||||||||||   | | |||||||||| | |     
T  1185828 aaacaaagtttttgaaagacaaagagaatacaacggatcattctcaaagaagaaaatgaaacctctaatactattcaatgaaattatccattagatgtaa 1185927  T
Q  212 agctttcaaatctattcaaaacttctc 238  Q
    |||||||||| ||  ||||||||||||    
T  1185928 agctttcaaaactggtcaaaacttctc 1185954  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 10677391 - 10677300
Alignment:
Q  82 atattgtttgtcttcttctgaccacgtgcaaaa-----caaagcttttcaaaaccaaatagaatgcaacagattattccaaaagaagcaaaa 168  Q
    |||||||||||||||||| ||||||||||||||     |||||  |||||||   ||||||||||||||| || ||||| || |||||||||    
T  10677391 atattgtttgtcttcttccgaccacgtgcaaaaacaaacaaagaatttcaaaggaaaatagaatgcaacatatcattcccaatgaagcaaaa 10677300  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 15990892 - 15990943
Alignment:
Q  139 atgcaacagattattccaaaagaagcaaaagaaacctctagtactattcaac 190  Q
    ||||||||||| ||| | ||||||||||| |||||||||||| |||||||||    
T  15990892 atgcaacagatcatttcgaaagaagcaaaggaaacctctagttctattcaac 15990943  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 69
Target Start/End: Original strand, 25954561 - 25954590
Alignment:
Q  40 ttttgtcttcttctaaagaaatgtcgcttt 69  Q
    ||||||||||||||||||||||||||||||    
T  25954561 ttttgtcttcttctaaagaaatgtcgcttt 25954590  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 28458495 - 28458541
Alignment:
Q  175 tctagtactattcaacagagtcatccattagaagcagagctttcaaa 221  Q
    |||||||| |||||||||| | |||||||||| ||||||||||||||    
T  28458495 tctagtacaattcaacagaattatccattagaggcagagctttcaaa 28458541  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 28458359 - 28458439
Alignment:
Q  16 tcaactttgatggaagctgatcaattttgtcttcttctaaagaaatgtcgcttttcaagttctgcaatattgtttgtcttct 97  Q
    ||||||||||||||  |||| |||||||||||||| || |||| | ||| | ||||||||| || | |||||||||||||||    
T  28458359 tcaactttgatggactctgaccaattttgtcttctcctgaagagaggtcac-tttcaagttttgaagtattgtttgtcttct 28458439  T

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