View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18168_high_6 (Length: 468)

Name: NF18168_high_6
Description: NF18168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18168_high_6
NF18168_high_6
[»] chr3 (3 HSPs)
chr3 (3-451)||(28387813-28388262)
chr3 (61-132)||(28387533-28387604)
chr3 (2-41)||(28387485-28387525)
[»] chr5 (1 HSPs)
chr5 (1-40)||(22621077-22621116)
[»] chr8 (1 HSPs)
chr8 (51-101)||(1214635-1214685)
[»] chr2 (1 HSPs)
chr2 (55-101)||(20985488-20985534)
[»] chr6 (3 HSPs)
chr6 (2-35)||(10026161-10026194)
chr6 (2-35)||(10027127-10027160)
chr6 (2-35)||(13178483-13178516)
[»] chr4 (1 HSPs)
chr4 (2-35)||(21360478-21360511)


Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 3 - 451
Target Start/End: Complemental strand, 28388262 - 28387813
Alignment:
Q  3 cttaacttaattttaggtaacgttttggtcctt-atcttannnnnnnncttcccatttcaatcctttatctttttaaatgttaacaatattatccttttt 101  Q
    |||||||||||||||||||| |||||||||||| ||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28388262 cttaacttaattttaggtaatgttttggtcctttatcttattttttttcttcccatttcaatcctttatctttttaaatgttaacaatattatccttttt 28388163  T
Q  102 ctacaaaaacccagcaaattcataacaaaaaactcatatcttcatcataataaaacccagaaatacatatcttcataaaatccccttcaccatttctgtt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28388162 ctacaaaaacccagcaaattcataacaaaaaactcatatcttcatcataataaaacccagaaatacatatcttcataaaatccccttcaccatttctgtt 28388063  T
Q  202 ttcctatatcatatttgtgcgctctatcatcatttcatgctgaaaatgaatcacatttccaacctcttatacaacctacaccaattcagctcttccccaa 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28388062 ttcctatatcatatttgtgcgctctatcatcatttcatgctgaaaatgaatcacatttccaacctcttatacaacctacaccaattcagctcttccccaa 28387963  T
Q  302 caacatcaccaccatctatcaacccacttctctcaattaaataaactcaaacccttactgtcaatttgccttactgccactttgcctttgtgaaagagag 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28387962 caacatcaccaccatctatcaacccacttctctcaattaaataaactcaaacccttactgtcaatttgccttactgccactttgcctttgtgaaagagag 28387863  T
Q  402 agttctgaattacaaacctggagcttattattgcttttgggttttgaatg 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28387862 agttctgaattacaaacctggagcttattattgcttttgggttttgaatg 28387813  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 28387533 - 28387604
Alignment:
Q  61 aatcctttatctttttaaatgttaacaatattatcctttttctacaaaaacccagcaaattcataacaaaaa 132  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||    
T  28387533 aatcctttatctttttaaatgttaacactattatcccttttctacaaaaacccaacaaattcataacaaaaa 28387604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 28387485 - 28387525
Alignment:
Q  2 ccttaacttaattttaggtaacgttttggtcc-ttatctta 41  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  28387485 ccttaacttaattttaggtaacgttttggtcctttatctta 28387525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 22621077 - 22621116
Alignment:
Q  1 tccttaacttaattttaggtaacgttttggtccttatctt 40  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  22621077 tccttaacttaattttaggtaacagtttggtccttatctt 22621116  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 1214685 - 1214635
Alignment:
Q  51 ttcccatttcaatcctttatctttttaaatgttaacaatattatccttttt 101  Q
    ||||||||| ||| ||||||||||||||  ||||||| |||||||||||||    
T  1214685 ttcccattttaatgctttatctttttaagggttaacactattatccttttt 1214635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 20985488 - 20985534
Alignment:
Q  55 catttcaatcctttatctttttaaatgttaacaatattatccttttt 101  Q
    ||||| |||||||||| |||||||||||||||||| | |||||||||    
T  20985488 cattttaatcctttatgtttttaaatgttaacaatgtcatccttttt 20985534  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 10026161 - 10026194
Alignment:
Q  2 ccttaacttaattttaggtaacgttttggtcctt 35  Q
    ||||||||||||||||||||||||||| ||||||    
T  10026161 ccttaacttaattttaggtaacgttttagtcctt 10026194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 10027160 - 10027127
Alignment:
Q  2 ccttaacttaattttaggtaacgttttggtcctt 35  Q
    |||||||||||||||||||||| |||||||||||    
T  10027160 ccttaacttaattttaggtaacattttggtcctt 10027127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 13178516 - 13178483
Alignment:
Q  2 ccttaacttaattttaggtaacgttttggtcctt 35  Q
    |||||||||||||||||||||| |||||||||||    
T  13178516 ccttaacttaattttaggtaacattttggtcctt 13178483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 21360478 - 21360511
Alignment:
Q  2 ccttaacttaattttaggtaacgttttggtcctt 35  Q
    ||||||||||||||||||||||||||| ||||||    
T  21360478 ccttaacttaattttaggtaacgttttagtcctt 21360511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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