View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18168_high_7 (Length: 454)

Name: NF18168_high_7
Description: NF18168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18168_high_7
NF18168_high_7
[»] chr3 (2 HSPs)
chr3 (63-444)||(39427513-39427876)
chr3 (165-351)||(37462443-37462626)
[»] chr5 (2 HSPs)
chr5 (177-369)||(36224348-36224543)
chr5 (45-185)||(36225009-36225149)
[»] chr2 (22 HSPs)
chr2 (195-353)||(8579522-8579677)
chr2 (194-262)||(7611979-7612047)
chr2 (205-351)||(9061186-9061329)
chr2 (205-351)||(8573550-8573693)
chr2 (205-262)||(9364668-9364725)
chr2 (205-262)||(17566128-17566185)
chr2 (205-254)||(10347833-10347882)
chr2 (205-351)||(9065638-9065781)
chr2 (200-254)||(11987527-11987581)
chr2 (163-254)||(9291985-9292073)
chr2 (205-254)||(9321030-9321079)
chr2 (205-254)||(9328647-9328696)
chr2 (205-254)||(10335892-10335941)
chr2 (205-254)||(10353157-10353206)
chr2 (209-254)||(12018937-12018982)
chr2 (308-351)||(9274475-9274518)
chr2 (205-254)||(9284235-9284284)
chr2 (300-349)||(9291899-9291948)
chr2 (205-254)||(10371906-10371955)
chr2 (205-250)||(16269141-16269186)
chr2 (67-111)||(7612153-7612197)
chr2 (194-254)||(12006152-12006212)
[»] chr4 (2 HSPs)
chr4 (194-355)||(561172-561330)
chr4 (205-254)||(26574909-26574958)
[»] chr7 (3 HSPs)
chr7 (205-348)||(45243656-45243796)
chr7 (205-348)||(45237907-45238047)
chr7 (206-254)||(45230480-45230528)
[»] chr1 (4 HSPs)
chr1 (205-355)||(29443366-29443513)
chr1 (205-251)||(29453349-29453395)
chr1 (205-254)||(29423313-29423362)
chr1 (205-254)||(29467825-29467874)
[»] scaffold0667 (1 HSPs)
scaffold0667 (165-254)||(4519-4605)
[»] chr8 (1 HSPs)
chr8 (205-254)||(41966750-41966799)


Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 63 - 444
Target Start/End: Complemental strand, 39427876 - 39427513
Alignment:
Q  63 atcctcgcctttaacataacacaagagattttcagtgaggttcctcttcctgatcttgaagaagctacaagcgagattaaatatgtttctattttgggga 162  Q
    |||||||| ||||||||||| ||||||||||||| ||||||||||||||||||  |      |||||||||||||||||||||||||||  ||||||| |    
T  39427876 atcctcgcgtttaacataactcaagagattttcaatgaggttcctcttcctgaaat------agctacaagcgagattaaatatgtttcgcttttgggaa 39427783  T
Q  163 agtgtctttctatgactgtgagttgtaatggaactaataagtttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttac 262  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||    
T  39427782 agtgtctttgtattactgtgagttgtaatggaactaataagtttgatgtttgggtgatgaaagaatatggatatagatatagttggtgtaaattgtttac 39427683  T
Q  263 atttgtaggtcaatggtgtttcaattcacctttaatgtctttgatgcctttatgttattccagtgatagaagtaaagttctgttggaagtagaatttagg 362  Q
     ||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39427682 ttttgtaggggaatggtgtttcaattcacctttaatgtctttgaagcctttatgttattccagtgatagaagtaaagttctgttggaagtaaaatttagg 39427583  T
Q  363 ggtgatttcatgagtgatcttaagaagaagcttaagaagaagctgttttggtatcatctcaaaagttataaagttacctatg 444  Q
    |||||||||| |||||||| ||||||||            |||||||||||||| |||||||||||||||||||||||||||    
T  39427582 ggtgatttcaagagtgatcctaagaaga------------agctgttttggtattatctcaaaagttataaagttacctatg 39427513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 165 - 351
Target Start/End: Complemental strand, 37462626 - 37462443
Alignment:
Q  165 tgtctttctatgactgtgagttgtaatggaactaataagtttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacat 264  Q
    ||||||| ||||||||||| || |||   ||||| ||| |||||||||||||| |||||||||||||||| |||| |||||||||||||| | | |||      
T  37462626 tgtctttgtatgactgtgaattataaaaaaactactaaatttgatgtttgggtgatgaaagaatatggatctagagatagttggtgtaaactttgtac-- 37462529  T
Q  265 ttgtaggtcaatggtgtttcaattcacctttaatgtctttgatgcctttatgttattccagtgatagaagtaaagttctgttggaag 351  Q
     ||| | | ||| |||||||| ||||||||| |  ||||||| ||||||||||||||| |||||| ||||||| ||| |||||||||    
T  37462528 -tgtggataaatcgtgtttcacttcacctttgaaatctttgaggcctttatgttattctagtgatggaagtaaggttttgttggaag 37462443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 177 - 369
Target Start/End: Complemental strand, 36224543 - 36224348
Alignment:
Q  177 actgtgagttgtaatggaactaataagtttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacatttgtaggtcaat 276  Q
    |||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||| ||  |||    
T  36224543 actgtgagttgttatggaactaataaatttgatgtttgggtgatgaaagaatatggatttagagatagttggtgtaaattgtttac-tttgtggg--aat 36224447  T
Q  277 ggtgtttcaattcacct------ttaatgtctttgatgcctttatgttattccagtgatagaagtaaagttctgttggaagtagaatttaggggtgatt 369  Q
    ||| |||| ||||||||      || || ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36224446 ggtatttcgattcaccttttaaattgatatctttgaagccttcatgttattccagtgatagaagtaaagttctgttggaagtagaattttggggtgatt 36224348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 45 - 185
Target Start/End: Complemental strand, 36225149 - 36225009
Alignment:
Q  45 gggaatcttggtaagcgt---atcctcgcctttaacataacacaagagattttcagtgaggttcctcttcctgatcttgaagaagctacaagcgagatta 141  Q
    ||||||||||||| ||||   |||||||| |||||||||||||  |||||||||| |||||||||||||||| ||| ||||| || ||||||| ||||||    
T  36225149 gggaatcttggtacgcgtttaatcctcgcgtttaacataacac--gagattttcaatgaggttcctcttcctaatcctgaagtagttacaagcaagatta 36225052  T
Q  142 aatatgtttctattttggggaagtgtctttctatgactgtgagt 185  Q
    ||||||||||  |||||||  ||||||||| |||||||||||||    
T  36225051 aatatgtttc-cttttgggatagtgtctttgtatgactgtgagt 36225009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 195 - 353
Target Start/End: Original strand, 8579522 - 8579677
Alignment:
Q  195 actaataagtttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacatttgtaggtcaatggtgtttcaattcacctt 294  Q
    |||| |||| |||| |||||||| |||||| |||||||||||||| |||||||||||||||||||||| |||| |||  | | ||| ||||||  |||||    
T  8579522 actactaaggttgaggtttgggtgatgaaaaaatatggatttagagatagttggtgtaaattgtttacttttg-agg--attcgtgcttcaataaacctt 8579618  T
Q  295 taatgtctttgatgcctttatgttattccagtgatagaagtaaagttctgttggaagta 353  Q
    | |  ||||||| |||||| |||||||| ||||||||||||||||||||||||||||||    
T  8579619 tgagatctttgaagcctttgtgttattctagtgatagaagtaaagttctgttggaagta 8579677  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 7612047 - 7611979
Alignment:
Q  194 aactaataagtttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttac 262  Q
    ||||| |||||||||||||||||| ||||||||||||||||| | | ||||||||||||||||||||||    
T  7612047 aactattaagtttgatgtttgggtgatgaaagaatatggattaaaagatagttggtgtaaattgtttac 7611979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 205 - 351
Target Start/End: Original strand, 9061186 - 9061329
Alignment:
Q  205 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacatttgtaggtcaatggtgtttcaattcacctttaatgtcttt 304  Q
    ||||||||||||| |||||||| ||||||| |||| |||||||||||||| | ||||| || ||   | ||| ||||||||||||||||||    | |||    
T  9061186 ttgatgtttgggtgatgaaagactatggatctagagatagttggtgtaaactttttactttggt---taaatcgtgtttcaattcacctttggacttttt 9061282  T
Q  305 gatgcctttatgttattccagtgatagaagtaaagttctgttggaag 351  Q
    || ||| ||||||||||| |||||| || |||| |||||||||||||    
T  9061283 gaggccgttatgttattctagtgatggaggtaaggttctgttggaag 9061329  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 205 - 351
Target Start/End: Original strand, 8573550 - 8573693
Alignment:
Q  205 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacatttgtaggtcaatggtgtttcaattcacctttaatgtcttt 304  Q
    ||||||||||||| |||||||||||||| | |||| |||||||||||||| | ||||| || ||   | ||| |||||||| | ||| ||| |  ||||     
T  8573550 ttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttactttcgt---taaatcgtgtttcactccacattttaaatcttc 8573646  T
Q  305 gatgcctttatgttattccagtgatagaagtaaagttctgttggaag 351  Q
    || ||||||| ||||||| |||||| ||||||| |||||||||||||    
T  8573647 gaggcctttaggttattctagtgatggaagtaaggttctgttggaag 8573693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 205 - 262
Target Start/End: Complemental strand, 9364725 - 9364668
Alignment:
Q  205 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttac 262  Q
    ||||||||||||| ||||||||||||||||| | | ||||||||||||||||||||||    
T  9364725 ttgatgtttgggtgatgaaagaatatggattaaaagatagttggtgtaaattgtttac 9364668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 17566128 - 17566185
Alignment:
Q  205 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttac 262  Q
    ||||||||||||| || |||||||||||||||||| ||| ||||||||||||||||||    
T  17566128 ttgatgtttgggtgattaaagaatatggatttagagataattggtgtaaattgtttac 17566185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 10347882 - 10347833
Alignment:
Q  205 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 254  Q
    ||||||||||||| |||||||||||||||| |||| ||||||||||||||    
T  10347882 ttgatgtttgggtcatgaaagaatatggatgtagagatagttggtgtaaa 10347833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 351
Target Start/End: Original strand, 9065638 - 9065781
Alignment:
Q  205 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacatttgtaggtc-aatggtgtttcaattcacctttaatgtctt 303  Q
    |||||| |||||| |||||||||||||||| |||| |||||||||||||| | ||||| ||    |||| |||  |||||| |||||| ||| |   |||    
T  9065638 ttgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttacttt----ggtcaaatcttgtttccattcacatttgacagctt 9065733  T
Q  304 tgatgcctttatgttattccagtgatagaagtaaagttctgttggaag 351  Q
     || |||| || |||||||| ||||| ||||||| |||||||||||||    
T  9065734 cgaggcctctaggttattccggtgatggaagtaaggttctgttggaag 9065781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 254
Target Start/End: Original strand, 11987527 - 11987581
Alignment:
Q  200 taagtttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 254  Q
    |||| ||||| ||||||| |||||||||||||||| |||| ||||||||||||||    
T  11987527 taagattgatatttgggtgatgaaagaatatggatgtagagatagttggtgtaaa 11987581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 163 - 254
Target Start/End: Complemental strand, 9292073 - 9291985
Alignment:
Q  163 agtgtctttctatgactgtgagttgtaatggaactaataagtttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 254  Q
    ||||||||| ||||||||||| ||   ||| ||||| |||  ||||||||||||| |||||| ||||||| | |||| ||||||||||||||    
T  9292073 agtgtctttgtatgactgtgaatt---atgaaactactaaaattgatgtttgggtgatgaaacaatatggttctagagatagttggtgtaaa 9291985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 9321079 - 9321030
Alignment:
Q  205 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 254  Q
    ||||||||||||| |||||||||||||| | |||| ||||||||||||||    
T  9321079 ttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaa 9321030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 9328696 - 9328647
Alignment:
Q  205 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 254  Q
    ||||||||||||| |||||| ||||||||| |||| ||||||||||||||    
T  9328696 ttgatgtttgggtgatgaaacaatatggatatagagatagttggtgtaaa 9328647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 10335941 - 10335892
Alignment:
Q  205 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 254  Q
    ||||||||||||| |||||||||||||| | |||| ||||||||||||||    
T  10335941 ttgatgtttgggtgatgaaagaatatggctgtagagatagttggtgtaaa 10335892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 10353206 - 10353157
Alignment:
Q  205 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 254  Q
    ||||||||||||| |||||||||||||||| |||| | ||||||||||||    
T  10353206 ttgatgtttgggtgatgaaagaatatggatgtagagagagttggtgtaaa 10353157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 12018937 - 12018982
Alignment:
Q  209 tgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 254  Q
    ||||||||| |||||||||||||||| |||| ||||||||||||||    
T  12018937 tgtttgggtgatgaaagaatatggatgtagagatagttggtgtaaa 12018982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 351
Target Start/End: Complemental strand, 9274518 - 9274475
Alignment:
Q  308 gcctttatgttattccagtgatagaagtaaagttctgttggaag 351  Q
    ||||||||||||||| |||||| ||||||| |||||||||||||    
T  9274518 gcctttatgttattctagtgatggaagtaaggttctgttggaag 9274475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 9284235 - 9284284
Alignment:
Q  205 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 254  Q
    |||| |||||||| |||||||||||||| | |||| ||||||||||||||    
T  9284235 ttgacgtttgggtgatgaaagaatatggttctagagatagttggtgtaaa 9284284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 349
Target Start/End: Complemental strand, 9291948 - 9291899
Alignment:
Q  300 tctttgatgcctttatgttattccagtgatagaagtaaagttctgttgga 349  Q
    ||||||| ||||||||||||||| || ||| ||||||| |||||||||||    
T  9291948 tctttgaggcctttatgttattctagggatggaagtaaggttctgttgga 9291899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 10371955 - 10371906
Alignment:
Q  205 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 254  Q
    ||||| ||||||| |||||||||||||| | |||| ||||||||||||||    
T  10371955 ttgatatttgggtgatgaaagaatatggttctagagatagttggtgtaaa 10371906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 16269186 - 16269141
Alignment:
Q  205 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtg 250  Q
    ||||||||||||| |||||||| ||||||| |||| ||||||||||    
T  16269186 ttgatgtttgggtgatgaaagagtatggatatagagatagttggtg 16269141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 7612197 - 7612153
Alignment:
Q  67 tcgcctttaacataacacaagagattttcagtgaggttcctcttc 111  Q
    |||| |||||| | |||||||||||||||| ||||||||||||||    
T  7612197 tcgcttttaaccttacacaagagattttcaatgaggttcctcttc 7612153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 254
Target Start/End: Original strand, 12006152 - 12006212
Alignment:
Q  194 aactaataagtttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 254  Q
    ||||| |||| ||||||| ||||| |||||||||||||| | || | ||||||||||||||    
T  12006152 aactactaagattgatgtatgggtgatgaaagaatatggttgtaaagatagttggtgtaaa 12006212  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 194 - 355
Target Start/End: Complemental strand, 561330 - 561172
Alignment:
Q  194 aactaataagtttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacatttgtaggtcaatggtgtttcaattcacct 293  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||| |||| |||  ||  || ||||| |  ||||    
T  561330 aactactaaggttgatgtttgggtaatgaaagaatatggatttagagatagttggtgtgtattgtttac-tttggagg--aagtgtttttcagtagacct 561234  T
Q  294 ttaatgtctttgatgcctttatgttattccagtgatagaagtaaagttctgttggaagtaga 355  Q
    || |   | | || ||||||| |||||||  |||||||||||||||||||||||||||||||    
T  561233 tttacaccatggaagcctttaggttattctggtgatagaagtaaagttctgttggaagtaga 561172  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 26574958 - 26574909
Alignment:
Q  205 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 254  Q
    ||||||||||||| |||||||||||||||| |||| ||||||||||||||    
T  26574958 ttgatgtttgggtgatgaaagaatatggatgtagagatagttggtgtaaa 26574909  T

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Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 205 - 348
Target Start/End: Complemental strand, 45243796 - 45243656
Alignment:
Q  205 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacatttgtaggtcaatggtgtttcaattcacctttaatgtcttt 304  Q
    ||||||||||||| |||||||||||||| | |||| ||| |||||||||| | ||||| || ||   | ||| |||||||||||  | |||    |||||    
T  45243796 ttgatgtttgggtgatgaaagaatatggttctagagatatttggtgtaaactttttactttggt---taaatcgtgtttcaattttcatttggaatcttt 45243700  T
Q  305 gatgcctttatgttattccagtgatagaagtaaagttctgttgg 348  Q
    || ||||||||||||||| |||||| ||||||||||||||||||    
T  45243699 gaggcctttatgttattcgagtgatcgaagtaaagttctgttgg 45243656  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 205 - 348
Target Start/End: Complemental strand, 45238047 - 45237907
Alignment:
Q  205 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacatttgtaggtcaatggtgtttcaattcacctttaatgtcttt 304  Q
    ||||||||||||| |||||||||||||||| |||| |||||||||||||| | |||||   | ||| | ||| |||||||||||  | | | |  |  ||    
T  45238047 ttgatgtttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttac---tttagttgaatcgtgtttcaattttcatctgaaattgtt 45237951  T
Q  305 gatgcctttatgttattccagtgatagaagtaaagttctgttgg 348  Q
    || ||||||||||||||| || ||| ||||||||||||||||||    
T  45237950 gaggcctttatgttattcaagcgatcgaagtaaagttctgttgg 45237907  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 45230528 - 45230480
Alignment:
Q  206 tgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 254  Q
    |||||||||||| |||||||||||||| | |||| ||||||||||||||    
T  45230528 tgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaa 45230480  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 355
Target Start/End: Original strand, 29443366 - 29443513
Alignment:
Q  205 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaattgtttacatttgtaggtcaatggtgtttcaattcacctttaatgtcttt 304  Q
    ||||||||||||| |||||||||||||||| |||| |||| ||||||||| | ||||| ||||  | | ||| |||||||| || |||||| |   ||||    
T  29443366 ttgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttac-tttg--gctgaatcgtgtttcagtttacctttgagagcttt 29443462  T
Q  305 gatgcctttatgttattccagtgatagaagtaaagttctgttggaagtaga 355  Q
    || |  |||| ||||||| || ||||||||||  ||||||||| |||||||    
T  29443463 gaggattttaggttattcgagcgatagaagtatggttctgttgcaagtaga 29443513  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 29453349 - 29453395
Alignment:
Q  205 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgt 251  Q
    ||||||||||||| |||||||||||||||| |||| |||| ||||||    
T  29453349 ttgatgtttgggtgatgaaagaatatggatgtagagatagctggtgt 29453395  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 29423362 - 29423313
Alignment:
Q  205 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 254  Q
    ||||||||||| | |||||||||||||||| |||| |||| |||||||||    
T  29423362 ttgatgtttggctgatgaaagaatatggatgtagagatagctggtgtaaa 29423313  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 29467825 - 29467874
Alignment:
Q  205 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 254  Q
    ||||||||||| | |||||||||||||||| |||| |||||||| |||||    
T  29467825 ttgatgtttggttgatgaaagaatatggatgtagagatagttggcgtaaa 29467874  T

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Target: scaffold0667 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 254
Target Start/End: Complemental strand, 4605 - 4519
Alignment:
Q  165 tgtctttctatgactgtgagttgtaatggaactaataagtttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 254  Q
    ||||||| ||||||||||| ||   ||| ||||| |||  ||||||||||||| |||||| |||||||||| | | ||||||||||||||    
T  4605 tgtctttgtatgactgtgaatt---atgaaactactaaaattgatgtttgggtgatgaaacaatatggattaaaagatagttggtgtaaa 4519  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 41966750 - 41966799
Alignment:
Q  205 ttgatgtttgggtaatgaaagaatatggatttagaaatagttggtgtaaa 254  Q
    ||||||||||||| |||||||||||| ||| |||| |||| |||||||||    
T  41966750 ttgatgtttgggtgatgaaagaatatcgatctagagatagctggtgtaaa 41966799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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