View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18168_low_1 (Length: 1228)

Name: NF18168_low_1
Description: NF18168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18168_low_1
NF18168_low_1
[»] chr2 (5 HSPs)
chr2 (14-895)||(17898518-17899405)
chr2 (893-1206)||(17901387-17901700)
chr2 (434-639)||(27890074-27890281)
chr2 (740-929)||(42161726-42161915)
chr2 (150-276)||(42161152-42161278)
[»] chr8 (3 HSPs)
chr8 (158-1059)||(43690825-43691721)
chr8 (1081-1203)||(43690504-43690625)
chr8 (598-703)||(40536895-40537000)
[»] chr6 (2 HSPs)
chr6 (456-651)||(26208141-26208336)
chr6 (875-931)||(26207855-26207911)
[»] chr3 (2 HSPs)
chr3 (534-644)||(32992854-32992964)
chr3 (875-931)||(46910901-46910957)
[»] chr7 (1 HSPs)
chr7 (875-943)||(45753481-45753549)
[»] chr5 (1 HSPs)
chr5 (590-651)||(41550567-41550628)


Alignment Details
Target: chr2 (Bit Score: 733; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 733; E-Value: 0
Query Start/End: Original strand, 14 - 895
Target Start/End: Original strand, 17898518 - 17899405
Alignment:
14 aatatcataaaaatgagcttttgaagctctttaggaggtgtcagaattcaaagagaaactaaaatttgctaaccaatt--------tattgccttctcgt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||         |||||||||  |||    
17898518 aatatcataaaaatgagcttttgaagctctttaggaggtgtcaaaattcaaagagaaactaaaatttgctaaccaatcagcacatctattgcctttgcgt 17898617  T
106 caactgtgaataacatgtatgctagctttgctgaaaaagctgtggaatatgtcgaatcaatgaaggggtggttccgttgatcttgcaatgtttggtaacc 205  Q
    ||| |||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
17898618 caagtgtgaataacatgtatgccagtttcgctgaaaaagctgtggaatatgtcgaatcaatgaaggg-tggttccattgatcttgcaatgtttggtaacc 17898716  T
206 atgtcaatacgcactttcgagtctttttcaataattaggtgagatagaccttcttttcaagccatatcaagtctcagatatggaccctgcatctttgcat 305  Q
    |||||||||  |||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
17898717 atgtcaataaacactttcgagtcattttcaacaattagatgagatagaccttcttttcaagccatatcaagtctcagatatggaccctgcatctttgcat 17898816  T
306 gaaattcatcacaagtttcaattttttcgattaaatcctttaagccatagagaccatatgaatggcgaagaagccttccacatcctgcgatctttctatt 405  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
17898817 gaaatgcatcacaagtttcaattttttcgattaaatcctttaagccatagagaccatatgaatgacgaagaagccttccacatcctgcaatctttctatt 17898916  T
406 gcttttagaatctctgtcacaattaagcttcacccaattatcatttggtctcttccaaccaataaacatagtttccttatgttggggattgactaacaaa 505  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
17898917 gcttttacaatctctgtcacgattaagcttcacccaattatcatttggtctctcccaaccgataaacatagtttccttatgttggggattgactaacaaa 17899016  T
506 tgattttgagaactttcttctataacactaatgaaattttggataacaaaggttgggttagttggtctgtagaatccatctttgaaaattgatttgtttc 605  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
17899017 tgattttgagaactttcttctataacactaatgaaattttggataacaaaggttgggttagttggtctttagaatccatctttgaaaattgatttgtttc 17899116  T
606 tacaagtccacaaatgccaacaagtagtcatgaatgttgttttccaactattatcaacaactccattccaccttttgttgaggtttttgaaagcccaaat 705  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
17899117 tacaagtccacaaatgccaacaagtagtcatgaatgttgttttccaactagtatcaacaactccattccaccttttgttgaggtttttgaaagcccaaat 17899216  T
706 tctgcaatcagtaaaagaaaaaagttagtgacccaatctggaggcacaagtatattccatagctgatatgcatgcgtacacgtcacggagcacgtgcaga 805  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||| ||||| |||||||||||||    
17899217 tctgcaatcagcaaaagaaaaaagttagtgacccaatctggaggcgcaagtatattccatacctgatatacatgcgtaca-gtcacagagcacgtgcaga 17899315  T
806 acatactcattttcattcctacaacatggacaagtgggtgatatacccaccgccatctactttggcggcagttagtaagaatacatccat 895  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
17899316 acatactcattttcattcctacaacatggacaagtgggtgatatacccaccgccatctactttggcggcagttagtaagaatacatccat 17899405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 893 - 1206
Target Start/End: Original strand, 17901387 - 17901700
Alignment:
893 catgagccactaaccacttgaaaatttgaatacgatgtgttccccttcatttccattgtacttgtcaatccccctccgcaaaaacatgatttgaaacaaa 992  Q
    ||||||||| ||||||| |||||||||||| ||||||  ||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||     
17901387 catgagccattaaccacgtgaaaatttgaacacgatgcattccccttcatttccatagtacttgtccatccccctccgcaataacatgatttgaaacaag 17901486  T
993 taaatcgtaagcactcttaacggaaaattgatgagtattaatgccaccccacccaatagtgtcaagcccatcaacctccataagggttgggattgctatg 1092  Q
    |||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
17901487 taaatcgtaagcactcttgacggagaattgatgagtactaatgccaccccacccaatggtgtcaagcccatcaacctccataagggttgggattgctatg 17901586  T
1093 attttattagcaatattaacatgtagattcgtaaacaataaattgttgtctcaattaccagaagcattagttatatccttaacagtaagagtgattttca 1192  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
17901587 attttattagcaatattaacgtgtagattcgtaaacaataaattgttgtctcaattaccagaagcattagttacatccttaacagtaagagtggttttca 17901686  T
1193 aaaaagtttgagta 1206  Q
    ||||||||||||||    
17901687 aaaaagtttgagta 17901700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 434 - 639
Target Start/End: Original strand, 27890074 - 27890281
Alignment:
434 ttcacccaattatcatttggtctcttccaaccaataaacatagtttccttatgt--tggggattgactaacaaatgattttgagaactttcttctataac 531  Q
    |||||||||  ||||  |||||||||||| |||||| ||| | ||||||| |||  || ||||||| |  |||||||||||||||||||||||| || |     
27890074 ttcacccaaccatcaactggtctcttccatccaatatacacaatttccttgtgtgttgaggattgattttcaaatgattttgagaactttcttcaatgaa 27890173  T
532 actaatgaaattttggataacaaaggttgggttagttggtctgtagaatccatctttgaaaattgatttgtttctacaagtccacaaatgccaacaagta 631  Q
     || ||| |||||| ||||||| ||||||| ||||| ||||| | |||||  ||||  |||||||||||||||||  |||||||||| |||||||| ||     
27890174 cctgatgtaattttagataacataggttggattagtcggtctttggaatctttcttcaaaaattgatttgtttctcaaagtccacaagtgccaacaggtt 27890273  T
632 gtcatgaa 639  Q
    ||||||||    
27890274 gtcatgaa 27890281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 740 - 929
Target Start/End: Original strand, 42161726 - 42161915
Alignment:
740 aatctggaggcacaagtatattccatagctgatatgcatgcgtacacgtcacggagcacgtgcagaacatactcattttcattcctacaacatggacaag 839  Q
    ||||||||| ||||||| || |||||| |||| |||||||| | ||  ||||| ||||| || | |||   ||||||| |||||| |||||| |||||||    
42161726 aatctggagacacaagtctagtccatacctgagatgcatgcctgcaa-tcacgaagcacatgaataacggtctcatttgcattcccacaacaaggacaag 42161824  T
840 tgggtgatataccca-ccgccatctactttggcggcagttagtaagaatacatccatgagccactaaccacttgaaaatttgaatacgatg 929  Q
    | || || || || | || ||| |||||| | ||| |||||||||||||||  |||||||||||||||||| |||||||||||||| ||||    
42161825 taggcgaaattcctatcccccacctacttcgacggtagttagtaagaatacgaccatgagccactaaccacatgaaaatttgaataagatg 42161915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 276
Target Start/End: Original strand, 42161152 - 42161278
Alignment:
150 gaatatgtcgaatcaatgaaggggtggttccgttgatcttgcaatgtttggtaaccatgtcaatacgcactttcgagtctttttcaataattaggtgaga 249  Q
    ||||| |||||| ||  |||||| ||||||| |||||||||||||  || |||||||| |||||| ||||||| |||||  | |||| ||| | ||||||    
42161152 gaatacgtcgaaccagagaagggatggttccattgatcttgcaattgttagtaaccatatcaataagcacttttgagtcactctcaacaatcacgtgaga 42161251  T
250 tagaccttcttttcaagccatatcaag 276  Q
    || ||| ||  | ||||||||||||||    
42161252 taaaccctcactccaagccatatcaag 42161278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 3e-60; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 158 - 1059
Target Start/End: Complemental strand, 43691721 - 43690825
Alignment:
158 cgaatcaatgaaggggtggttccgttgatcttgcaatgtttggtaaccatgtcaatacgcactttcgagtctttttcaataattaggtgagatagacctt 257  Q
    |||||||| |||||||| ||||| ||||||||||||| |||||| ||||| || |||  ||||||||||||  |||||| ||||||||||||||||||||    
43691721 cgaatcaaggaaggggtagttcctttgatcttgcaatttttggtgaccatatctataaacactttcgagtcactttcaacaattaggtgagatagacctt 43691622  T
258 cttttcaagccatatcaagtctcagatatggaccctgcatctttgcatgaaattcatcacaagtttcaattttttcgattaaatcctttaagccatagag 357  Q
    || |||||||||||| ||||| ||||||  |||||   |||| |||||| | |  | ||| |  | |||||||  ||| ||||||  ||||| |    |     
43691621 ctcttcaagccatatgaagtcccagatagagaccccatatctctgcatggagtgtagcactacctccaatttta-cgactaaatctcttaagtcgccta- 43691524  T
358 accatatgaatggcgaagaagccttccacatcctgcgatctttctattgcttttagaatctctgtcacaattaagcttcacccaattatcatttggtctc 457  Q
     |||| ||||| ||||| || || ||||||||| || |||| || |||||||||| |  |||  |||| ||||||||||||| ||||||||||| || ||    
43691523 -ccatctgaattgcgaa-aacccctccacatcccgcaatctctccattgcttttacatgctccatcacgattaagcttcaccaaattatcatttagtatc 43691426  T
458 ----------ttccaaccaataaacatagtttccttatgttggggattgactaacaaatgattttgagaactttcttctataacactaatgaaattttgg 547  Q
              |||   ||||||||||||||||| | ||||||||||||||| |||| ||||||||||||| ||||| ||||  |  ||||||||||||||    
43691425 atttagtatcttcttgccaataaacatagtttcttaatgttggggattgaccaacacatgattttgagaattttctgctatggctttaatgaaattttgg 43691326  T
548 ataacaaaggttgggttagttggtctgtagaatccatctttgaaaattgatttgtttctacaagtccacaaatgccaacaagtagtcatgaatgttgttt 647  Q
    |||||||||||||||||||||||||| |  ||||| |||| |  ||||||||| |||||  || |||||| ||| ||||| |||| ||| ||||||||||    
43691325 ataacaaaggttgggttagttggtctttgaaatccttcttcg-taattgatttatttctcaaaatccacatatgtcaacatgtagccataaatgttgttt 43691227  T
648 tccaactattatcaacaactccattccacc-ttttgttgaggtttttgaaagcccaaattctgcaatcagtaaaagaaaaaagttagtgacccaatctgg 746  Q
     ||| ||| ||| |||| |  ||||||||| ||||||||||||||| ||||||   ||  ||   | ||  | || ||||||||||||||||| |||  |    
43691226 gccacctagtat-aacagcctcattccacctttttgttgaggttttggaaagc---aagact---aacaaaagaaaaaaaaagttagtgacccgatccag 43691134  T
747 aggcacaagtatattccatagctgatatgcatgcgtacacgtcacggagcacgtgcagaacatactcattttcattcctacaacatggacaagtgggtga 846  Q
    || ||||||  |||| ||||  || ||||  |||||| |  ||| | ||||| || | ||||  | ||| |||||| ||| |||| |||||  ||  |||    
43691133 agacacaagcctatttcatacttggtatgtttgcgtata-atcaagaagcacatgaataacaatcacatcttcatt-cta-aacagggacacatgaatga 43691037  T
847 tatacccaccgccatctactttggcggcagttagtaagaatacatccatgagccactaaccacttgaaaatttgaatacgatgtgttccccttcatttcc 946  Q
    |||||||||| |||||||||| ||| | ||||||| ||||||  || |||||| ||||||||| | ||| |||||||| |||||| |||||| || ||||    
43691036 tatacccacccccatctacttcggcagtagttagtcagaatatgtctatgagcaactaaccacattaaagtttgaatatgatgtgatcccctccaattcc 43690937  T
947 attgtacttgtcaatccccctccgcaaaaacatgatttgaaacaaataaatcgtaagcactcttaacggaaaattgatgagtattaatgccaccccaccc 1046  Q
    || | |||| ||||||||| || | |  |||| ||||||||||||||||||||||| ||||| | ||||| ||||||  |||| ||  | ||||||||||    
43690936 atagaacttctcaatccccttcag-agtaacacgatttgaaacaaataaatcgtaaacactcatgacggagaattgacaagtactagcgtcaccccaccc 43690838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1081 - 1203
Target Start/End: Complemental strand, 43690625 - 43690504
Alignment:
1081 gggattgctatgattttattagcaatattaacatgtagattcgtaaacaataaattgttgtctcaattaccagaagcattagttatatccttaacagtaa 1180  Q
    ||||||||||  ||| |||| |||||||||  | ||||||||  |||||| ||||||||||| ||||| ||| |||||||| ||| ||| ||||||||||    
43690625 gggattgctacaattatatttgcaatattataaggtagattctcaaacaagaaattgttgtcccaattccca-aagcattacttacatcattaacagtaa 43690527  T
1181 gagtgattttcaaaaaagtttga 1203  Q
    ||||| | || ||||||| ||||    
43690526 gagtggtatttaaaaaagattga 43690504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 598 - 703
Target Start/End: Original strand, 40536895 - 40537000
Alignment:
598 tttgtttctacaagtccacaaatgccaacaagtagtcatgaatgttgttttccaactattatcaacaactccattccaccttttgttgaggtttttgaaa 697  Q
    ||||||||| |||||||||| |||||| || ||||||||||| ||| | ||||| |||   |||  ||||||| || | |||||| | ||||||||||||    
40536895 tttgtttctccaagtccacagatgccagcatgtagtcatgaaagttttcttccacctaaactcagaaactccaatcgatcttttgctaaggtttttgaaa 40536994  T
698 gcccaa 703  Q
     |||||    
40536995 acccaa 40537000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 6e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 456 - 651
Target Start/End: Complemental strand, 26208336 - 26208141
Alignment:
456 tcttccaaccaataaacatagtttccttatgttggggattgactaacaaatgattttgagaactttcttctataacactaatgaaattttggataacaaa 555  Q
    ||||||| |||||| ||| |||| ||||| |||| ||||||| |  |||||||||||||||||||||||| || |  || ||| |||||||||||||| |    
26208336 tcttccatccaatatacacagttcccttaggttgaggattgatttgcaaatgattttgagaactttcttcaatgaacctgatgtaattttggataacata 26208237  T
556 ggttgggttagttggtctgtagaatccatctttgaaaattgatttgtttctacaagtccacaaatgccaacaagtagtcatgaatgttgttttcca 651  Q
     | ||| ||||  ||||| | || ||| ||||  ||||||||||||||||  |||||||||||||||||||| || ||||||   |||||||||||    
26208236 aggtggattagccggtctttggattccttcttcaaaaattgatttgtttcgccaagtccacaaatgccaacaggttgtcatgttagttgttttcca 26208141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 875 - 931
Target Start/End: Complemental strand, 26207911 - 26207855
Alignment:
875 agttagtaagaatacatccatgagccactaaccacttgaaaatttgaatacgatgtg 931  Q
    ||||||| |||||||  || || |||||||||||| |||||||||||||||||||||    
26207911 agttagtgagaatacgaccgtgtgccactaaccacatgaaaatttgaatacgatgtg 26207855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 534 - 644
Target Start/End: Complemental strand, 32992964 - 32992854
Alignment:
534 taatgaaattttggataacaaaggttgggttagttggtctgtagaatccatctttgaaaattgatttgtttctacaagtccacaaatgccaacaagtagt 633  Q
    |||||||||||||||| ||| | |||||||||  |||||| |  ||||| ||||  ||||| | ||||||||| |||||||||| ||||||||| |||||    
32992964 taatgaaattttggatgacataagttgggttatctggtctttgaaatccttcttcaaaaatagctttgtttctccaagtccacatatgccaacatgtagt 32992865  T
634 catgaatgttg 644  Q
    |||||| ||||    
32992864 catgaaagttg 32992854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 875 - 931
Target Start/End: Complemental strand, 46910957 - 46910901
Alignment:
875 agttagtaagaatacatccatgagccactaaccacttgaaaatttgaatacgatgtg 931  Q
    |||| ||||||||||| |||||||| ||||||||| ||||| |||||||||||||||    
46910957 agtttgtaagaatacaaccatgagcaactaaccacatgaaagtttgaatacgatgtg 46910901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 875 - 943
Target Start/End: Original strand, 45753481 - 45753549
Alignment:
875 agttagtaagaatacatccatgagccactaaccacttgaaaatttgaatacgatgtgttccccttcatt 943  Q
    |||| ||||||||||  |||||||| ||||||||| ||||| ||||||||||||||| |||||| ||||    
45753481 agtttgtaagaatacgaccatgagctactaaccacatgaaagtttgaatacgatgtggtcccctccatt 45753549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 590 - 651
Target Start/End: Original strand, 41550567 - 41550628
Alignment:
590 aaaattgatttgtttctacaagtccacaaatgccaacaagtagtcatgaatgttgttttcca 651  Q
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41550567 aaaattgttttatttcgccaattccacaaatgctaacaagtagtcatgaaagttgtcttcca 41550628  T

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