View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18168_low_11 (Length: 432)
Name: NF18168_low_11
Description: NF18168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18168_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 27423584 - 27424010
Alignment:
| Q |
1 |
aacactcttatgaccacaatactcacagcaactataacaattcttgtaaacatggctttagcagctctaaacaacaatgcattcaatgcaagccatcttt |
100 |
Q |
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| T |
27423584 |
aacacacttatgaccacaatactcacagcaactataacaattcttgtaaacatggctttggcagctctaaacaacaatgcattcaatgcaagccatcttt |
27423683 |
T |
|
| Q |
101 |
ttagtagtggattttttggttcaaaatcagatacaatcttccttttgaagtatggttcagcatcaatttgtttgttgattagtttcttatgcagctcaat |
200 |
Q |
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| T |
27423684 |
ttagtagtggattttttggttcaaaatcagacacaatcttccttttgaaatatgcttcagcatcaatttgtttgttgattagtttcttatgcagctcaat |
27423783 |
T |
|
| Q |
201 |
ggccataggatttctaattgatgcaaattttttgatgaatgcttatggagattttttgtcagggggttacacacaaagtgtattggaaaaagggtttacc |
300 |
Q |
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| T |
27423784 |
ggccataggatttctaattgatgcaaattttttgatgaatgcttatggagattttttgtcagggggttacacacaaagtgtattggaaaaagggtttacc |
27423883 |
T |
|
| Q |
301 |
ttagcttttgttggtaatagggtgttttgtgttgctattcctttgatgctttggatgttgggtccagtgcttgtatttttagcctccatagctttagttt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27423884 |
ttagcttttgttggtaatagggtgttttgtgttgctattcctttgatgctttggatgttgggtccagtgcttgtatttttagcctccatagctttggttt |
27423983 |
T |
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| Q |
401 |
gtttgttgcatgagtttgatgatgtcc |
427 |
Q |
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|||||||||||||||||||| |||||| |
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| T |
27423984 |
gtttgttgcatgagtttgattatgtcc |
27424010 |
T |
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