View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18168_low_13 (Length: 420)

Name: NF18168_low_13
Description: NF18168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18168_low_13
NF18168_low_13
[»] chr7 (5 HSPs)
chr7 (1-411)||(96550-96960)
chr7 (251-330)||(44124579-44124658)
chr7 (294-329)||(30592688-30592723)
chr7 (234-304)||(28613161-28613231)
chr7 (251-300)||(47881508-47881557)
[»] chr8 (3 HSPs)
chr8 (235-312)||(34862969-34863046)
chr8 (280-330)||(27483099-27483149)
chr8 (270-328)||(39550992-39551050)
[»] chr5 (6 HSPs)
chr5 (259-328)||(22214960-22215029)
chr5 (270-328)||(7430168-7430226)
chr5 (259-330)||(6586566-6586637)
chr5 (251-323)||(5090794-5090866)
chr5 (235-302)||(13898736-13898803)
chr5 (257-306)||(9634888-9634937)
[»] chr2 (2 HSPs)
chr2 (251-327)||(27318025-27318101)
chr2 (235-294)||(10547131-10547190)
[»] chr1 (9 HSPs)
chr1 (252-328)||(6025905-6025981)
chr1 (251-326)||(17472872-17472947)
chr1 (271-328)||(52444955-52445012)
chr1 (252-300)||(19392278-19392326)
chr1 (257-315)||(7600418-7600476)
chr1 (259-327)||(4068311-4068379)
chr1 (251-306)||(14443972-14444027)
chr1 (261-314)||(17797578-17797631)
chr1 (238-302)||(3596263-3596327)
[»] chr6 (5 HSPs)
chr6 (259-328)||(33532433-33532502)
chr6 (262-302)||(31694669-31694709)
chr6 (270-304)||(19263170-19263204)
chr6 (277-330)||(431029-431082)
chr6 (241-330)||(1912430-1912519)
[»] chr4 (6 HSPs)
chr4 (270-315)||(8721877-8721922)
chr4 (271-328)||(34581629-34581686)
chr4 (259-299)||(4762190-4762230)
chr4 (240-304)||(43188018-43188082)
chr4 (277-328)||(37585832-37585883)
chr4 (270-303)||(26930497-26930530)
[»] chr3 (5 HSPs)
chr3 (254-319)||(27858857-27858922)
chr3 (244-328)||(50251482-50251566)
chr3 (259-330)||(38884018-38884089)
chr3 (263-313)||(43307573-43307623)
chr3 (257-314)||(50930522-50930579)
[»] scaffold0940 (1 HSPs)
scaffold0940 (251-328)||(2096-2173)


Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 96550 - 96960
Alignment:
Q  1 cagttttttaacctgcctttgatattcaaatttaatgtcattatcaaatttatactttctgtttttatccctgttcattgtccatgcgcaattgaattcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  96550 cagttttttaacctgcctttgatattcaaatttaatgtcattatcaaatttatactttctgtttttatccctgttcattgtccatgcgcaattgaattcc 96649  T
Q  101 ttattcgaatcagtttgtatttaagcttttagacaatattatgtttctgtaaattaggctattgcgcctgagacatcctgattataggaaacctgaaaag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  96650 ttattcgaatcagtttgtatttaagcttttagacaatattatgtttctgtaaattaggctattgtgcctgagacatcctgattataggaaacctgaaaag 96749  T
Q  201 gctagtatggctccaatttgataaatggataaggcaatattgtcaatcaaggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgcta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  96750 gctagtatggctccaatttgataaatggataaggcaatattgtcaatcaaggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgcta 96849  T
Q  301 tagcgctactatagccgctgtttgacaatagcgatttgtccaaattcagctatattatagccgtagcgccacctatagatactgtttaacaacactggga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  96850 tagcgctactatagccgctgtttgacaatagcgatttgtccaaattccgctatattatagccgtagcgccacctatagatactgtttaacaacactggga 96949  T
Q  401 gaaagtgatga 411  Q
    |||||||||||    
T  96950 gaaagtgatga 96960  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 330
Target Start/End: Complemental strand, 44124658 - 44124579
Alignment:
Q  251 ggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgacaata 330  Q
    ||||||| ||||||||| ||||||||||||||| || |||||||| ||||||||||  ||||| | ||| ||||||||||    
T  44124658 ggatagcggaaaatagcatattgttaaaattccactgcgcaatagggctatagcgccgctatatcagctatttgacaata 44124579  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 329
Target Start/End: Original strand, 30592688 - 30592723
Alignment:
Q  294 agtgctatagcgctactatagccgctgtttgacaat 329  Q
    |||||||||||||||||||||| |||||||||||||    
T  30592688 agtgctatagcgctactatagctgctgtttgacaat 30592723  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 304
Target Start/End: Original strand, 28613161 - 28613231
Alignment:
Q  234 gcaatattgtcaatcaaggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagc 304  Q
    ||||| |||||||||  ||||||  |||||| ||  |||||||||||||||||| |||| |||||||||||    
T  28613161 gcaatgttgtcaatcgcggatagtggaaaatggcagattgttaaaattccgctatgcaacagtgctatagc 28613231  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 300
Target Start/End: Complemental strand, 47881557 - 47881508
Alignment:
Q  251 ggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgcta 300  Q
    ||||||||||||| |||| |||||||||||||| ||| ||||||| ||||    
T  47881557 ggatagcagaaaaaagcggattgttaaaattcctctatgcaatagggcta 47881508  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 34863046 - 34862969
Alignment:
Q  235 caatattgtcaatcaaggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactat 312  Q
    |||| |||||||||||||||||||||||| |||  |||||||||||||||||  ||||||||| ||||| ||||||||    
T  34863046 caatgttgtcaatcaaggatagcagaaaacagcagattgttaaaattccgctctgcaatagtgttatagtgctactat 34862969  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 27483149 - 27483099
Alignment:
Q  280 ttccgctacgcaatagtgctatagcgctactatagccgctgtttgacaata 330  Q
    |||||||  ||||||||||||||| || |||||||||||| ||||||||||    
T  27483149 ttccgctgtgcaatagtgctatagtgccactatagccgctatttgacaata 27483099  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 328
Target Start/End: Complemental strand, 39551050 - 39550992
Alignment:
Q  270 attgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgacaa 328  Q
    ||||||||||| | |||||||||| | ||||||| || |||||||||||| ||||||||    
T  39551050 attgttaaaatcctgctacgcaattgggctatagtgccactatagccgctatttgacaa 39550992  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 259 - 328
Target Start/End: Complemental strand, 22215029 - 22214960
Alignment:
Q  259 gaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgacaa 328  Q
    |||||||||| ||||||||||||||||||||||||||||||||| | ||||||| || ||| ||||||||    
T  22215029 gaaaatagcggattgttaaaattccgctacgcaatagtgctataactctactattgcagctatttgacaa 22214960  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 328
Target Start/End: Complemental strand, 7430226 - 7430168
Alignment:
Q  270 attgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgacaa 328  Q
    ||||||||||||||||||| || ||||| ||||||||||| ||||||||| ||||||||    
T  7430226 attgttaaaattccgctacacagtagtgttatagcgctacaatagccgctatttgacaa 7430168  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 330
Target Start/End: Complemental strand, 6586637 - 6586566
Alignment:
Q  259 gaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgacaata 330  Q
    ||||||||||  ||||| ||||||| ||| |||||||| ||||||||  |||||| ||||||||||||||||    
T  6586637 gaaaatagcggtttgttcaaattcctctatgcaatagttctatagcggcactataaccgctgtttgacaata 6586566  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 323
Target Start/End: Original strand, 5090794 - 5090866
Alignment:
Q  251 ggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgttt 323  Q
    |||||||||||| ||| |  ||||||||||| || ||||||| || |||||||| ||| ||||||||||||||    
T  5090794 ggatagcagaaagtagtgatttgttaaaatttcgatacgcaagagggctatagctctattatagccgctgttt 5090866  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 302
Target Start/End: Complemental strand, 13898803 - 13898736
Alignment:
Q  235 caatattgtcaatcaaggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctata 302  Q
    |||| |||||||||| ||||||  |||||||| |  |||||||||||||||||| ||| |||||||||    
T  13898803 caatgttgtcaatcacggatagtggaaaatagtgggttgttaaaattccgctacacaacagtgctata 13898736  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 9634888 - 9634937
Alignment:
Q  257 cagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgc 306  Q
    ||||||||||||  ||||| |||||||||||||||| | |||||||||||    
T  9634888 cagaaaatagcggtttgttcaaattccgctacgcaacattgctatagcgc 9634937  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 27318101 - 27318025
Alignment:
Q  251 ggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgaca 327  Q
    |||||||||||| |||| ||||||| ||||||||||| ||||||||  |||||||| |||||||||||| |||||||    
T  27318101 ggatagcagaaagtagcatattgtttaaattccgctaggcaatagttatatagcgccactatagccgctatttgaca 27318025  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 10547131 - 10547190
Alignment:
Q  235 caatattgtcaatcaaggatagcagaaaatagcgtattgttaaaattccgctacgcaata 294  Q
    |||| ||||||||||  ||||||||||||||||  |||||| ||||||||||||||||||    
T  10547131 caatgttgtcaatcacagatagcagaaaatagctaattgttcaaattccgctacgcaata 10547190  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 252 - 328
Target Start/End: Original strand, 6025905 - 6025981
Alignment:
Q  252 gatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgacaa 328  Q
    ||||||||||||||| | ||||||||||||| ||| | ||| |||||||||||||| |||||||| || ||||||||    
T  6025905 gatagcagaaaatagtggattgttaaaattctgctgcccaacagtgctatagcgctgctatagccactatttgacaa 6025981  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 326
Target Start/End: Complemental strand, 17472947 - 17472872
Alignment:
Q  251 ggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgac 326  Q
    |||||||||||||||||| |||||||||| ||| ||| |||||||| ||||| ||||||| ||||| || ||||||    
T  17472947 ggatagcagaaaatagcgcattgttaaaactcctctatgcaatagttctatatcgctactttagccactatttgac 17472872  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 328
Target Start/End: Original strand, 52444955 - 52445012
Alignment:
Q  271 ttgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgacaa 328  Q
    |||||||||||| |||| ||||| ||||||||||||||||||||| ||| ||||||||    
T  52444955 ttgttaaaattctgctatgcaatggtgctatagcgctactatagcagctatttgacaa 52445012  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 19392326 - 19392278
Alignment:
Q  252 gatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgcta 300  Q
    |||||||| |||||||||||||||||||||||||| | |||||||||||    
T  19392326 gatagcagtaaatagcgtattgttaaaattccgctgcacaatagtgcta 19392278  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 315
Target Start/End: Original strand, 7600418 - 7600476
Alignment:
Q  257 cagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatagc 315  Q
    |||||||||| || ||||| |||||| ||||| ||||||||||||||||| ||||||||    
T  7600418 cagaaaatagtgttttgttcaaattctgctacacaatagtgctatagcgccactatagc 7600476  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 327
Target Start/End: Complemental strand, 4068379 - 4068311
Alignment:
Q  259 gaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgaca 327  Q
    |||||||| | | |||||||||| ||||| |||||||||||| ||||||||| |||| ||| |||||||    
T  4068379 gaaaatagtggagtgttaaaatttcgctatgcaatagtgctacagcgctactttagcagctatttgaca 4068311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 251 - 306
Target Start/End: Complemental strand, 14444027 - 14443972
Alignment:
Q  251 ggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgc 306  Q
    ||||||||||||| |||| ||| |||||||||| ||| ||||||||| ||||||||    
T  14444027 ggatagcagaaaacagcggattattaaaattccactatgcaatagtgttatagcgc 14443972  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 17797631 - 17797578
Alignment:
Q  261 aaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatag 314  Q
    |||||||||||||||  |||| ||||| ||||||| |||||||||| |||||||    
T  17797631 aaatagcgtattgtttgaattacgctatgcaatagcgctatagcgccactatag 17797578  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 302
Target Start/End: Original strand, 3596263 - 3596327
Alignment:
Q  238 tattgtcaatcaaggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctata 302  Q
    ||||||||||   |||| |||||||||||||  ||||| ||||||  ||||||||||||||||||    
T  3596263 tattgtcaattttggatcgcagaaaatagcgatttgtttaaattcaactacgcaatagtgctata 3596327  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 328
Target Start/End: Original strand, 33532433 - 33532502
Alignment:
Q  259 gaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgacaa 328  Q
    ||||||||||  ||||| |||||| ||||| ||| ||||||||||||| |||||||| ||||||||||||    
T  33532433 gaaaatagcggtttgttcaaattctgctactcaacagtgctatagcgcaactatagctgctgtttgacaa 33532502  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 31694669 - 31694709
Alignment:
Q  262 aatagcgtattgttaaaattccgctacgcaatagtgctata 302  Q
    ||||||| ||| |||||||||||||||||||||||||||||    
T  31694669 aatagcggatttttaaaattccgctacgcaatagtgctata 31694709  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 304
Target Start/End: Original strand, 19263170 - 19263204
Alignment:
Q  270 attgttaaaattccgctacgcaatagtgctatagc 304  Q
    |||||||||||||||||| ||||||||||||||||    
T  19263170 attgttaaaattccgctatgcaatagtgctatagc 19263204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 330
Target Start/End: Complemental strand, 431082 - 431029
Alignment:
Q  277 aaattccgctacgcaatagtgctatagcgctactatagccgctgtttgacaata 330  Q
    |||||| ||||||||| |||||||||||||  ||||||||||| ||| ||||||    
T  431082 aaattctgctacgcaacagtgctatagcgcatctatagccgctatttaacaata 431029  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 330
Target Start/End: Original strand, 1912430 - 1912519
Alignment:
Q  241 tgtcaatcaaggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgacaata 330  Q
    ||||||| | |||| || |||||||| |  ||||| ||||||||||| ||||  |||||||||||  ||||||| |||| ||||||||||    
T  1912430 tgtcaattacggatcgcggaaaatagaggtttgttcaaattccgctatgcaacggtgctatagcgtcactatagtcgctatttgacaata 1912519  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 8721877 - 8721922
Alignment:
Q  270 attgttaaaattccgctacgcaatagtgctatagcgctactatagc 315  Q
    ||||||||||||||||||||||||||||| ||||||  ||||||||    
T  8721877 attgttaaaattccgctacgcaatagtgccatagcgacactatagc 8721922  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 328
Target Start/End: Complemental strand, 34581686 - 34581629
Alignment:
Q  271 ttgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgacaa 328  Q
    ||||| |||||| | |||| || |||||||||||||||||||||||||| ||||||||    
T  34581686 ttgtttaaattctgatacgtaacagtgctatagcgctactatagccgctatttgacaa 34581629  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 4762230 - 4762190
Alignment:
Q  259 gaaaatagcgtattgttaaaattccgctacgcaatagtgct 299  Q
    |||||||| | ||||||||||||||||||||||||||||||    
T  4762230 gaaaatagtgaattgttaaaattccgctacgcaatagtgct 4762190  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 304
Target Start/End: Original strand, 43188018 - 43188082
Alignment:
Q  240 ttgtcaatcaaggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagc 304  Q
    ||||||||| || ||| |||||||||| | ||| ||||||||||| ||| |||||||||||||||    
T  43188018 ttgtcaatcgagaataacagaaaatagtggatttttaaaattccgatacacaatagtgctatagc 43188082  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 328
Target Start/End: Original strand, 37585832 - 37585883
Alignment:
Q  277 aaattccgctacgcaatagtgctatagcgctactatagccgctgtttgacaa 328  Q
    |||||||||||||||||||||||||||| | || ||||| ||| ||||||||    
T  37585832 aaattccgctacgcaatagtgctatagccccaccatagcggctatttgacaa 37585883  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 303
Target Start/End: Original strand, 26930497 - 26930530
Alignment:
Q  270 attgttaaaattccgctacgcaatagtgctatag 303  Q
    |||||||||||||||||| |||||||||||||||    
T  26930497 attgttaaaattccgctatgcaatagtgctatag 26930530  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 27858922 - 27858857
Alignment:
Q  254 tagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatagccgct 319  Q
    |||| |||||||| | ||||||||||||| ||||| || |||||||||||| | ||||||||||||    
T  27858922 tagctgaaaatagaggattgttaaaattctgctacacagtagtgctatagcaccactatagccgct 27858857  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 328
Target Start/End: Original strand, 50251482 - 50251566
Alignment:
Q  244 caatcaaggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgacaa 328  Q
    |||||| ||||||| |||||||||| | ||| ||||||||||||| ||||| |||| ||||||   |||||| ||| ||||||||    
T  50251482 caatcatggatagcggaaaatagcggactgtcaaaattccgctacacaataatgctttagcgccgttatagcagctatttgacaa 50251566  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 330
Target Start/End: Original strand, 38884018 - 38884089
Alignment:
Q  259 gaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgacaata 330  Q
    |||||||||| | |||||||||||| ||  |||||||||||||||| | |||||| || || ||||||||||    
T  38884018 gaaaatagcggactgttaaaattcctctgtgcaatagtgctatagcaccactatacccactatttgacaata 38884089  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 43307573 - 43307623
Alignment:
Q  263 atagcgtattgttaaaattccgctacgcaatagtgctatagcgctactata 313  Q
    |||||| |||||||||| | |||||| ||||||||||||||||| ||||||    
T  43307573 atagcggattgttaaaacttcgctactcaatagtgctatagcgccactata 43307623  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 314
Target Start/End: Original strand, 50930522 - 50930579
Alignment:
Q  257 cagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatag 314  Q
    ||||| |||||  ||||||||||||| ||||| |||||| |||||||||| |||||||    
T  50930522 cagaacatagcagattgttaaaattctgctacacaatagcgctatagcgccactatag 50930579  T

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Target: scaffold0940 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0940
Description:

Target: scaffold0940; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 2173 - 2096
Alignment:
Q  251 ggatagcagaaaatagcgtattgttaaaattccgctacgcaatagtgctatagcgctactatagccgctgtttgacaa 328  Q
    |||||| ||||||||||  |||||||||| ||| ||| ||||||||||||| |||  || ||||| ||| ||||||||    
T  2173 ggatagtagaaaatagcagattgttaaaagtcctctatgcaatagtgctatggcgtcaccatagcagctatttgacaa 2096  T

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