View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18168_low_16 (Length: 385)
Name: NF18168_low_16
Description: NF18168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18168_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 34082822 - 34083166
Alignment:
| Q |
18 |
tgaaacaaacaatatacaaattgtgttgggattaagtttcattggttaatttactaactaatgtcttgccttgatcgaccctaaagtgcttttattttaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34082822 |
tgaaacaaacaatatacaaattgtgttgggattaagtttcatcagttaatttactaactaatgtcttgccttgatcgaccctaaactgcttttattttaa |
34082921 |
T |
|
| Q |
118 |
ttaaaccttaacctaccacccttcatagatctcaatgtctcgcatataatcggagatcatctctagtctcttatctttgatgtctcactcagttagctaa |
217 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||||| | || |||||||||||||||||| || |||| |||||||| ||||||||| |
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| T |
34082922 |
ttaaattttaacctaccatccttcatagatctcaatgtctcgcatataacctgatatcatctctagtctcttacctctgatatctcactcggttagctaa |
34083021 |
T |
|
| Q |
218 |
aagagaaacattaagttcggatgtttagcttgatatctcagcaactaacatttacaagtgaactaacccatgtcccttacatcggacaaaacaaagcaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
34083022 |
aagagaaacattaagttcggatgtttagcttgatttctc-gcaactaacatttacaagtgaacttacccatgtcccttacatcggac-aaacaaagcaat |
34083119 |
T |
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| Q |
318 |
agaagatagaaatcaattcaaagacaaacctataaaactaatataca |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34083120 |
agaagatagaaatcaattcaaagacaaacctataaaactaatataca |
34083166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 18435663 - 18435724
Alignment:
| Q |
174 |
tcatctctagtctcttatctttgatgtctcactcagttagctaaaagagaaacattaagttc |
235 |
Q |
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| T |
18435663 |
tcatctcttgtctctaaaatctgatgtttcactcagttagctaaaagtgaaacattaagttc |
18435724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 26744557 - 26744345
Alignment:
| Q |
18 |
tgaaacaaacaatatacaaattgtgttgggattaagtttcattggttaatttactaactaatgtcttgccttgatcgaccctaaagtgcttttattttaa |
117 |
Q |
| |
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||||||||||||| ||||| ||||||| |||||||| |||||| |||| |||||||| |||||| | || || ||| ||| | | |||| || |
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| T |
26744557 |
tgaaacaaacaatttacaatttgtgttaggattaagcttcattagttagtttactaa----tgtctttctttaatggactaaaaactcttattatcccaa |
26744462 |
T |
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| Q |
118 |
ttaaaccttaacctaccacccttcatagatctcaatgtctcgcatataatcggagatcatctctagtctcttatctttgatgtctcactcagttagctaa |
217 |
Q |
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||| | ||| ||||| ||||||||||||||||| ||||||| || ||||| |||||| ||||||||| ||| | ||||||||||| ||||||||||||| |
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| T |
26744461 |
ttatatcttcacctatcacccttcatagatctcgatgtctcacaaataatgggagataatctctagtatctaacctttgatgtcttgctcagttagctaa |
26744362 |
T |
|
| Q |
218 |
aagagaaacattaagtt |
234 |
Q |
| |
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|||||| |||| |||| |
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| T |
26744361 |
tagagaagcatttagtt |
26744345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 16573240 - 16573184
Alignment:
| Q |
18 |
tgaaacaaacaatatacaaattgtgttgggattaagtttcattggttaatttactaa |
74 |
Q |
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||||||| || ||||||||| |||||||| ||||||||||||| |||| || ||||| |
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| T |
16573240 |
tgaaacacacgatatacaaaatgtgttggaattaagtttcattagttagttcactaa |
16573184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 235
Target Start/End: Complemental strand, 7480506 - 7480408
Alignment:
| Q |
137 |
ccttcatagatctcaatgtctcgcatataatcggagatcatctctagtctcttatctttgatgtctcactcagttagctaaaagagaaacattaagttc |
235 |
Q |
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||||||||||||||||||||||||| ||||| ||| ||||||||||||||| | ||| |||||||| | || |||||||||| || |||||||||| |
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| T |
7480506 |
ccttcatagatctcaatgtctcgcagataattggaaatcatctctagtctccaaccttcgatgtctcgcctaggaagctaaaagataagcattaagttc |
7480408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 235
Target Start/End: Complemental strand, 31930738 - 31930612
Alignment:
| Q |
109 |
ttattttaattaaaccttaacctaccacccttcatagatctcaatgtctcgcatataatcggagatcatctctagtctcttatctttgatgtctcactca |
208 |
Q |
| |
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|||||| ||||| ||||| || || |||| | ||||||||| ||||||| | ||||| |||||| |||||||||||| | | |||||||| | || |
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| T |
31930738 |
ttatttcaattataccttcacttatcaccttaaatagatctcgatgtctcatagataatgagagatcgtctctagtctctaacttatgatgtcttgccca |
31930639 |
T |
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| Q |
209 |
gttagctaaaagagaaacattaagttc |
235 |
Q |
| |
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||||||| |||||||| |||||||||| |
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| T |
31930638 |
gttagctgaaagagaagcattaagttc |
31930612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 23720209 - 23720254
Alignment:
| Q |
185 |
ctcttatctttgatgtctcactcagttagctaaaagagaaacatta |
230 |
Q |
| |
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||||||||||||||||||| |||| |||||||||||| || ||||| |
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| T |
23720209 |
ctcttatctttgatgtctcgctcaattagctaaaagataagcatta |
23720254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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