View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18168_low_17 (Length: 378)
Name: NF18168_low_17
Description: NF18168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18168_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 47 - 376
Target Start/End: Original strand, 27756538 - 27756854
Alignment:
| Q |
47 |
atattgtattctactttcctctgataacatcatttcttacttgtttcagaaattggaagactgcaatagtttcatctagtccacttatcttcttaggatt |
146 |
Q |
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| T |
27756538 |
atattgtattctagtttcctcttataacatcatttcttgcttgcttcagaaattggaagactgcaatagtttcatctagtccacttatcttcttaggatt |
27756637 |
T |
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| Q |
147 |
ttttcgacttgttacaacaactggtgtggattatcaggtgggattatactcattgagattcttagaaatttgtgtcaacaaacgttttgacatgcatcta |
246 |
Q |
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| T |
27756638 |
ttttcgacttgttacaacaactggtgtggattatcaggtaggattatactcattgagattcttagaaatttgtgtcaacaaacatttcgacatgcatct- |
27756736 |
T |
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| Q |
247 |
ctaatactgcatcgtattaaactttaacaa-tataatcgcacatgtgtttttgaaatttccatcaactctgtgtataatcacacatgttaaatgatgtag |
345 |
Q |
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| T |
27756737 |
--------------tattaaactttaacaagtataatcgcacatgtgtttttgaaatttctatcaactctatgtttaatcccacatgttaaatgatgtag |
27756822 |
T |
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| Q |
346 |
-tttccaagactataataatctgacccctatg |
376 |
Q |
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| T |
27756823 |
ttttccaagactataataatctgacccctatg |
27756854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27756397 - 27756441
Alignment:
| Q |
1 |
tttcaactagctcatacaataggcaaagaagcatcattaacatga |
45 |
Q |
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| T |
27756397 |
tttcaactagctcatacaataggcaaagaagcattattaacatga |
27756441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 100 - 234
Target Start/End: Original strand, 24167465 - 24167599
Alignment:
| Q |
100 |
tggaagactgcaatagtttcatctagtccacttatcttcttaggattttttcg-acttgttacaacaactggtgtggattatcaggtgggattatactca |
198 |
Q |
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| T |
24167465 |
tggaagattgcagtagcttcttgtagactacttatcttcttaggatttttttttacttgttacaacaattggtgtggattatcaggtgggattatattca |
24167564 |
T |
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| Q |
199 |
ttgagattcttagaaatttgtgtcaacaaacgtttt |
234 |
Q |
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| T |
24167565 |
ttgatattcttagaaa-ttgagtcaacaaacatttt |
24167599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 100 - 234
Target Start/End: Complemental strand, 46225874 - 46225739
Alignment:
| Q |
100 |
tggaagactgcaatagtttcatctagtc--cacttatcttcttaggattttttcgacttgttacaacaactggtgtggattatcaggtgggattatactc |
197 |
Q |
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| T |
46225874 |
tggaagattgcagtagttccatgtagtctccacttatcttcttgggattttcttaacctgttacaacaattggtgtggattatcaggtgggattatattc |
46225775 |
T |
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| Q |
198 |
attgagattcttagaaatttgtgtcaacaaacgtttt |
234 |
Q |
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| T |
46225774 |
attgatattcttagaaa-ttgagtcaacaaacatttt |
46225739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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