View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18168_low_18 (Length: 365)
Name: NF18168_low_18
Description: NF18168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18168_low_18 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 105 - 365
Target Start/End: Complemental strand, 15455080 - 15454821
Alignment:
| Q |
105 |
gtcacttcgaaatttgtatccaaggttgtaaatcgatgttgcggtccatcgcgatccttaatattgcagagaatcacaatcaaaaatattttttggccac |
204 |
Q |
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| T |
15455080 |
gtcacttcgaaatttgtatccaaggttgtaaatcgatgttgcggtccatcgtgatccttaatattgcagagaatcacaatcaaaaatattttttggccac |
15454981 |
T |
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| Q |
205 |
aacgtttactcaactatatttagcgtctgacatgcctcaaattttatctgatacaagttttctggtattgtgcagcaggaggtatctccaagaacatcag |
304 |
Q |
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| T |
15454980 |
aacgtttactcaactatatttagcgtctgacatgcctcaaattttatct-atacaagttttgtggtattgtgcagcaggaggtatctccaagaacatcag |
15454882 |
T |
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| Q |
305 |
gaagactatcacatagcagtggacctcttaatggatctttaacagatagtccaccagtttc |
365 |
Q |
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| T |
15454881 |
gaagactatcacatagcagtggacctcttaatggatctttaacagatagtccaccagtttc |
15454821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 15455167 - 15455122
Alignment:
| Q |
18 |
caaatgtctctgcaacattttattgtctgagttgttaggagactaa |
63 |
Q |
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| T |
15455167 |
caaatgtctctgcaacattttattgtctgagttgttaggagactaa |
15455122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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